HEADER VIRAL PROTEIN 30-NOV-19 6V4T TITLE MPER-TMD OF HIV-1 ENV BOUND WITH THE ENTRY INHIBITOR S2C3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN GP160; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: ENV; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS HIV-1 ENV, SMALL-MOLECULE, ENTRY INHIBITOR, MPER, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 14 AUTHOR T.XIAO,G.FREY,Q.FU,C.L.LAVINE,D.A.SCOTT,M.S.SEAMAN,J.J.CHOU,B.CHEN REVDAT 4 15-MAY-24 6V4T 1 COMPND HETNAM FORMUL REVDAT 3 14-JUN-23 6V4T 1 REMARK REVDAT 2 06-MAY-20 6V4T 1 JRNL REVDAT 1 01-APR-20 6V4T 0 JRNL AUTH T.XIAO,G.FREY,Q.FU,C.L.LAVINE,D.A.SCOTT,M.S.SEAMAN,J.J.CHOU, JRNL AUTH 2 B.CHEN JRNL TITL HIV-1 FUSION INHIBITORS TARGETING THE MEMBRANE-PROXIMAL JRNL TITL 2 EXTERNAL REGION OF ENV SPIKES. JRNL REF NAT.CHEM.BIOL. V. 16 529 2020 JRNL REFN ESSN 1552-4469 JRNL PMID 32152540 JRNL DOI 10.1038/S41589-020-0496-Y REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6V4T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1000243203. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 0.04 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-99% 13C; U-99% 15N] REMARK 210 MPER-TMD, 2 MM S2C3, 40 MM MOPS, REMARK 210 50 MM DMPC, 100 MM DHPC, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 2D 1H-15N TROSY REMARK 210 -HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 14 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 661 144.93 -171.22 REMARK 500 1 PHE A 673 1.71 54.37 REMARK 500 1 TYR A 681 -41.14 -130.37 REMARK 500 1 PHE B 673 25.73 34.50 REMARK 500 1 ARG B 709 -176.38 -68.64 REMARK 500 1 PHE C 673 -29.39 56.60 REMARK 500 1 ARG C 709 163.98 59.79 REMARK 500 2 LEU A 661 177.87 55.88 REMARK 500 2 PHE A 673 -67.25 64.99 REMARK 500 2 ARG A 709 -76.07 66.54 REMARK 500 2 LEU B 661 90.61 54.13 REMARK 500 2 PHE B 673 6.27 50.42 REMARK 500 2 PHE C 673 -69.40 63.27 REMARK 500 2 ARG C 709 -78.40 64.54 REMARK 500 3 LEU A 661 -155.93 53.34 REMARK 500 3 GLU A 662 168.60 78.25 REMARK 500 3 PHE A 673 23.28 40.22 REMARK 500 3 TYR A 681 -40.24 -132.41 REMARK 500 3 PHE B 673 25.33 38.05 REMARK 500 3 TRP B 680 0.72 -69.49 REMARK 500 3 PHE C 673 -44.20 69.08 REMARK 500 3 TYR C 681 -39.40 -133.03 REMARK 500 3 ARG C 709 178.72 54.55 REMARK 500 4 PHE A 673 -0.34 59.02 REMARK 500 4 PHE B 673 -3.45 51.15 REMARK 500 4 PHE C 673 -7.38 54.89 REMARK 500 4 TRP C 680 62.29 -110.37 REMARK 500 4 TYR C 681 -33.99 -173.92 REMARK 500 4 ARG C 709 138.77 63.44 REMARK 500 5 LEU A 661 -54.72 -150.72 REMARK 500 5 GLU A 662 177.39 48.42 REMARK 500 5 PHE A 673 -3.07 49.67 REMARK 500 5 TRP A 680 -43.93 -145.16 REMARK 500 5 PHE B 673 -12.25 58.92 REMARK 500 5 PHE C 673 -27.77 72.53 REMARK 500 5 TYR C 681 -39.05 78.49 REMARK 500 6 LEU A 661 -146.74 -67.11 REMARK 500 6 GLU A 662 96.34 -169.34 REMARK 500 6 PHE A 673 16.64 48.58 REMARK 500 6 TYR A 681 -32.51 92.12 REMARK 500 6 LEU B 661 123.61 61.13 REMARK 500 6 PHE B 673 10.47 45.56 REMARK 500 6 PHE C 673 -71.42 64.23 REMARK 500 7 LEU A 661 -176.16 39.75 REMARK 500 7 GLU A 662 -179.07 172.73 REMARK 500 7 PHE A 673 22.05 41.39 REMARK 500 7 VAL A 689 2.00 -68.81 REMARK 500 7 ARG A 709 46.99 38.23 REMARK 500 7 PHE B 673 7.83 53.45 REMARK 500 7 GLU C 662 -176.51 -170.60 REMARK 500 REMARK 500 THIS ENTRY HAS 110 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QOJ A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QOJ B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QOJ C 801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30503 RELATED DB: BMRB REMARK 900 RELATED ID: 6E8W RELATED DB: PDB DBREF 6V4T A 660 710 UNP Q74849 Q74849_9HIV1 653 703 DBREF 6V4T B 660 710 UNP Q74849 Q74849_9HIV1 653 703 DBREF 6V4T C 660 710 UNP Q74849 Q74849_9HIV1 653 703 SEQRES 1 A 51 LEU LEU GLU LEU ASP LYS TRP ALA SER LEU TRP ASN TRP SEQRES 2 A 51 PHE ASP ILE THR ASN TRP LEU TRP TYR ILE ARG ILE PHE SEQRES 3 A 51 ILE ILE ILE VAL GLY SER LEU ILE GLY LEU ARG ILE VAL SEQRES 4 A 51 PHE ALA VAL LEU SER LEU VAL ASN ARG VAL ARG GLN SEQRES 1 B 51 LEU LEU GLU LEU ASP LYS TRP ALA SER LEU TRP ASN TRP SEQRES 2 B 51 PHE ASP ILE THR ASN TRP LEU TRP TYR ILE ARG ILE PHE SEQRES 3 B 51 ILE ILE ILE VAL GLY SER LEU ILE GLY LEU ARG ILE VAL SEQRES 4 B 51 PHE ALA VAL LEU SER LEU VAL ASN ARG VAL ARG GLN SEQRES 1 C 51 LEU LEU GLU LEU ASP LYS TRP ALA SER LEU TRP ASN TRP SEQRES 2 C 51 PHE ASP ILE THR ASN TRP LEU TRP TYR ILE ARG ILE PHE SEQRES 3 C 51 ILE ILE ILE VAL GLY SER LEU ILE GLY LEU ARG ILE VAL SEQRES 4 C 51 PHE ALA VAL LEU SER LEU VAL ASN ARG VAL ARG GLN HET QOJ A 801 82 HET QOJ B 801 82 HET QOJ C 801 82 HETNAM QOJ 4,4'-(DECANE-1,10-DIYL)BIS(9-AMINO-2,3-DIHYDRO-1H- HETNAM 2 QOJ CYCLOPENTA[B]QUINOLIN-4-IUM) FORMUL 4 QOJ 3(C34 H44 N4 2+) HELIX 1 AA1 GLU A 662 LEU A 669 1 8 HELIX 2 AA2 TRP A 670 TRP A 672 5 3 HELIX 3 AA3 PHE A 673 TRP A 680 1 8 HELIX 4 AA4 TYR A 681 ARG A 696 1 16 HELIX 5 AA5 ILE A 697 ASN A 706 1 10 HELIX 6 AA6 GLU B 662 LEU B 669 1 8 HELIX 7 AA7 PHE B 673 TRP B 680 1 8 HELIX 8 AA8 TYR B 681 ARG B 696 1 16 HELIX 9 AA9 PHE B 699 VAL B 705 1 7 HELIX 10 AB1 ASN B 706 VAL B 708 5 3 HELIX 11 AB2 GLU C 662 LEU C 669 1 8 HELIX 12 AB3 TRP C 670 TRP C 672 5 3 HELIX 13 AB4 PHE C 673 ALA C 700 1 28 HELIX 14 AB5 ALA C 700 ARG C 707 1 8 SITE 1 AC1 8 LEU A 660 LEU A 661 LEU A 669 TRP A 672 SITE 2 AC1 8 TRP C 666 TRP C 670 LEU C 679 TRP C 680 SITE 1 AC2 7 TRP A 666 THR A 676 TRP A 680 LEU B 660 SITE 2 AC2 7 LEU B 661 LEU B 669 TRP B 672 SITE 1 AC3 6 TRP B 666 THR B 676 LEU C 661 TRP C 666 SITE 2 AC3 6 LEU C 669 TRP C 672 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1