HEADER HYDROLASE 03-DEC-19 6V54 TITLE CRYSTAL STRUCTURE OF METALLO BETA LACTAMASE FROM HIRSCHIA BALTICA COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HIRSCHIA BALTICA (STRAIN ATCC 49814 / DSM 5838 SOURCE 3 / IFAM 1418); SOURCE 4 ORGANISM_TAXID: 582402; SOURCE 5 STRAIN: ATCC 49814 / DSM 5838 / IFAM 1418; SOURCE 6 GENE: HBAL_3075; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VARIANT: GOLD; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PMCSG68 KEYWDS HYDROLASE, STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF KEYWDS 2 INFECTIOUS DISEASES, CSGID EXPDTA X-RAY DIFFRACTION AUTHOR N.MALTSEVA,Y.KIM,S.CLANCY,M.ENDRES,R.MULLIGAN,A.JOACHIMIAK,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 1 25-DEC-19 6V54 0 JRNL AUTH N.MALTSEVA,Y.KIM,S.CLANCY,M.ENDRES,R.MULLIGAN,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF METALLO BETA LACTAMASE FROM HIRSCHIA JRNL TITL 2 BALTICA. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 49548 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.134 REMARK 3 R VALUE (WORKING SET) : 0.132 REMARK 3 FREE R VALUE : 0.163 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 2460 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.3700 - 3.8000 0.94 2662 141 0.1492 0.1679 REMARK 3 2 3.7900 - 3.0100 0.98 2631 146 0.1366 0.1601 REMARK 3 3 3.0100 - 2.6300 0.98 2661 121 0.1440 0.1422 REMARK 3 4 2.6300 - 2.3900 0.99 2645 128 0.1358 0.1722 REMARK 3 5 2.3900 - 2.2200 0.99 2626 130 0.1248 0.1632 REMARK 3 6 2.2200 - 2.0900 0.99 2630 133 0.1181 0.1480 REMARK 3 7 2.0900 - 1.9900 1.00 2643 133 0.1156 0.1474 REMARK 3 8 1.9900 - 1.9000 1.00 2634 147 0.1126 0.1628 REMARK 3 9 1.9000 - 1.8300 1.00 2648 123 0.1066 0.1506 REMARK 3 10 1.8300 - 1.7600 1.00 2606 147 0.1053 0.1435 REMARK 3 11 1.7600 - 1.7100 1.00 2650 120 0.1080 0.1370 REMARK 3 12 1.7100 - 1.6600 1.00 2624 142 0.1073 0.1632 REMARK 3 13 1.6600 - 1.6200 1.00 2610 131 0.1144 0.1660 REMARK 3 14 1.6200 - 1.5800 1.00 2625 147 0.1280 0.1758 REMARK 3 15 1.5800 - 1.5400 1.00 2582 160 0.1339 0.1893 REMARK 3 16 1.5400 - 1.5100 1.00 2584 149 0.1470 0.2005 REMARK 3 17 1.5100 - 1.4800 0.99 2613 143 0.1774 0.2558 REMARK 3 18 1.4800 - 1.4500 0.92 2414 119 0.2100 0.2363 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.123 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.372 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 1896 REMARK 3 ANGLE : 1.296 2590 REMARK 3 CHIRALITY : 0.099 281 REMARK 3 PLANARITY : 0.009 345 REMARK 3 DIHEDRAL : 19.053 706 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6V54 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1000245764. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49632 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 29.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000, 0.1M TRIS PH 7.0, 0.2M REMARK 280 MAGNESIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 38.83400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 22.42082 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 80.33267 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 38.83400 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 22.42082 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 80.33267 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 38.83400 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 22.42082 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 80.33267 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 38.83400 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 22.42082 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 80.33267 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 38.83400 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 22.42082 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 80.33267 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 38.83400 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 22.42082 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 80.33267 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.84164 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 160.66533 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 44.84164 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 160.66533 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 44.84164 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 160.66533 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 44.84164 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 160.66533 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 44.84164 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 160.66533 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 44.84164 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 160.66533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -581.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 240.99800 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 240.99800 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 240.99800 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 301 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 511 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 539 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 545 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 555 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 581 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 27 REMARK 465 ASN A 28 REMARK 465 ALA A 29 REMARK 465 GLN A 30 REMARK 465 SER A 31 REMARK 465 GLU A 32 REMARK 465 GLN A 33 REMARK 465 SER A 34 REMARK 465 THR A 35 REMARK 465 HIS A 36 REMARK 465 ILE A 37 REMARK 465 GLU A 38 REMARK 465 GLY A 39 REMARK 465 VAL A 40 REMARK 465 ALA A 41 REMARK 465 GLU A 42 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 120 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 78 -159.94 -119.32 REMARK 500 ARG A 78 -159.05 -112.68 REMARK 500 ASP A 86 143.25 76.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 306 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 116 NE2 REMARK 620 2 HIS A 118 ND1 98.6 REMARK 620 3 HIS A 180 NE2 102.6 105.1 REMARK 620 4 HOH A 445 O 121.4 111.9 115.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD2 REMARK 620 2 CYS A 199 SG 104.7 REMARK 620 3 HIS A 241 NE2 88.7 108.9 REMARK 620 4 FMT A 302 O1 156.7 98.6 83.8 REMARK 620 5 HOH A 445 O 89.2 110.2 140.0 82.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 537 O REMARK 620 2 HOH A 504 O 79.7 REMARK 620 3 HOH A 537 O 76.2 134.9 REMARK 620 4 HOH A 504 O 136.2 90.2 81.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 309 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP06558 RELATED DB: TARGETTRACK DBREF 6V54 A 30 261 UNP C6XID6 C6XID6_HIRBI 30 261 SEQADV 6V54 SER A 27 UNP C6XID6 EXPRESSION TAG SEQADV 6V54 ASN A 28 UNP C6XID6 EXPRESSION TAG SEQADV 6V54 ALA A 29 UNP C6XID6 EXPRESSION TAG SEQADV 6V54 THR A 257 UNP C6XID6 ALA 257 ENGINEERED MUTATION SEQRES 1 A 235 SER ASN ALA GLN SER GLU GLN SER THR HIS ILE GLU GLY SEQRES 2 A 235 VAL ALA GLU LYS PRO VAL GLU PHE VAL LYS LEU GLY THR SEQRES 3 A 235 GLY VAL TRP MSE HIS THR GLY TYR LYS VAL VAL PRO PRO SEQRES 4 A 235 TRP GLY ASN ILE ARG THR ASN GLY LEU ILE ILE GLU ARG SEQRES 5 A 235 GLY ASP TYR SER VAL LEU VAL ASP THR ALA TRP ASN ASP SEQRES 6 A 235 ALA GLN THR ALA GLU ILE VAL ALA TRP ALA LYS ASP THR SEQRES 7 A 235 LEU GLN LYS PRO ILE ARG ALA SER ILE HIS THR HIS ALA SEQRES 8 A 235 HIS SER ASP LYS MSE GLY GLY MSE ASP ALA LEU HIS MSE SEQRES 9 A 235 LEU GLY VAL GLU THR PHE ALA THR ASP LEU THR ASN ARG SEQRES 10 A 235 LEU ALA ILE GLU ARG GLY LEU MSE PRO ALA LYS ASN VAL SEQRES 11 A 235 LEU ASN ILE SER GLU ILE GLY SER GLN ILE GLU TRP GLU SEQRES 12 A 235 GLY LEU THR ILE LEU TYR PRO GLY GLY GLY HIS SER GLU SEQRES 13 A 235 ASP ASN ILE VAL VAL ASN GLU GLY VAL ASN ASN ILE LEU SEQRES 14 A 235 PHE GLY GLY CYS MSE ILE ARG PRO GLY MSE THR THR SER SEQRES 15 A 235 LEU GLY ASN ILE ASP ASP ALA ASN LEU GLY TYR TRP SER SEQRES 16 A 235 LYS ALA VAL GLU ASN ALA ALA ASN ALA PHE PRO ASP SER SEQRES 17 A 235 GLN ILE VAL ILE PRO SER HIS GLY LYS PRO ALA GLY ARG SEQRES 18 A 235 GLU ILE LEU LYS ASN THR ALA TYR ILE THR ARG PRO LYS SEQRES 19 A 235 LEU MODRES 6V54 MSE A 56 MET MODIFIED RESIDUE MODRES 6V54 MSE A 122 MET MODIFIED RESIDUE MODRES 6V54 MSE A 125 MET MODIFIED RESIDUE MODRES 6V54 MSE A 130 MET MODIFIED RESIDUE MODRES 6V54 MSE A 151 MET MODIFIED RESIDUE MODRES 6V54 MSE A 200 MET MODIFIED RESIDUE MODRES 6V54 MSE A 205 MET MODIFIED RESIDUE HET MSE A 56 8 HET MSE A 122 8 HET MSE A 125 8 HET MSE A 130 16 HET MSE A 151 16 HET MSE A 200 8 HET MSE A 205 8 HET MG A 301 1 HET FMT A 302 3 HET EDO A 303 4 HET CL A 304 1 HET ZN A 305 1 HET ZN A 306 1 HET GOL A 307 6 HET GOL A 308 12 HET FMT A 309 6 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM FMT FORMIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 MG MG 2+ FORMUL 3 FMT 2(C H2 O2) FORMUL 4 EDO C2 H6 O2 FORMUL 5 CL CL 1- FORMUL 6 ZN 2(ZN 2+) FORMUL 8 GOL 2(C3 H8 O3) FORMUL 11 HOH *187(H2 O) HELIX 1 AA1 ASN A 90 THR A 104 1 15 HELIX 2 AA2 HIS A 118 GLY A 123 1 6 HELIX 3 AA3 GLY A 124 LEU A 131 1 8 HELIX 4 AA4 ASP A 139 ARG A 148 1 10 HELIX 5 AA5 CYS A 199 ILE A 201 5 3 HELIX 6 AA6 TYR A 219 PHE A 231 1 13 HELIX 7 AA7 ARG A 247 THR A 257 1 11 SHEET 1 AA1 7 GLU A 46 GLY A 51 0 SHEET 2 AA1 7 VAL A 54 VAL A 63 -1 O MSE A 56 N VAL A 48 SHEET 3 AA1 7 GLY A 67 GLU A 77 -1 O ILE A 75 N TRP A 55 SHEET 4 AA1 7 SER A 82 VAL A 85 -1 O VAL A 83 N ILE A 76 SHEET 5 AA1 7 ILE A 109 ILE A 113 1 O ARG A 110 N SER A 82 SHEET 6 AA1 7 GLU A 134 THR A 138 1 O GLU A 134 N ARG A 110 SHEET 7 AA1 7 ASN A 155 LEU A 157 1 O LEU A 157 N ALA A 137 SHEET 1 AA2 5 GLN A 165 TRP A 168 0 SHEET 2 AA2 5 LEU A 171 LEU A 174 -1 O ILE A 173 N ILE A 166 SHEET 3 AA2 5 VAL A 186 GLU A 189 -1 O ASN A 188 N THR A 172 SHEET 4 AA2 5 ILE A 194 GLY A 198 -1 O PHE A 196 N VAL A 187 SHEET 5 AA2 5 ILE A 236 PRO A 239 1 O ILE A 236 N LEU A 195 LINK C TRP A 55 N MSE A 56 1555 1555 1.33 LINK C MSE A 56 N HIS A 57 1555 1555 1.33 LINK NE2 HIS A 116 ZN ZN A 306 1555 1555 2.04 LINK ND1 HIS A 118 ZN ZN A 306 1555 1555 1.99 LINK OD2 ASP A 120 ZN ZN A 305 1555 1555 2.09 LINK C LYS A 121 N MSE A 122 1555 1555 1.33 LINK C MSE A 122 N GLY A 123 1555 1555 1.33 LINK C GLY A 124 N MSE A 125 1555 1555 1.34 LINK C MSE A 125 N ASP A 126 1555 1555 1.34 LINK C HIS A 129 N AMSE A 130 1555 1555 1.32 LINK C HIS A 129 N BMSE A 130 1555 1555 1.32 LINK C AMSE A 130 N LEU A 131 1555 1555 1.33 LINK C BMSE A 130 N LEU A 131 1555 1555 1.33 LINK C LEU A 150 N AMSE A 151 1555 1555 1.34 LINK C LEU A 150 N BMSE A 151 1555 1555 1.32 LINK C AMSE A 151 N PRO A 152 1555 1555 1.33 LINK C BMSE A 151 N PRO A 152 1555 1555 1.34 LINK NE2 HIS A 180 ZN ZN A 306 1555 1555 2.00 LINK C CYS A 199 N MSE A 200 1555 1555 1.32 LINK SG CYS A 199 ZN ZN A 305 1555 1555 2.23 LINK C MSE A 200 N ILE A 201 1555 1555 1.35 LINK C GLY A 204 N MSE A 205 1555 1555 1.32 LINK C MSE A 205 N THR A 206 1555 1555 1.33 LINK NE2 HIS A 241 ZN ZN A 305 1555 1555 2.05 LINK MG MG A 301 O HOH A 537 1555 1555 2.11 LINK MG MG A 301 O HOH A 504 1555 1555 2.16 LINK O1 FMT A 302 ZN ZN A 305 1555 1555 2.47 LINK ZN ZN A 305 O HOH A 445 1555 1555 2.07 LINK ZN ZN A 306 O HOH A 445 1555 1555 1.95 LINK MG MG A 301 O HOH A 537 1555 2545 2.06 LINK MG MG A 301 O HOH A 504 1555 2545 2.12 CISPEP 1 PRO A 64 PRO A 65 0 4.06 SITE 1 AC1 2 HOH A 504 HOH A 537 SITE 1 AC2 9 HIS A 180 CYS A 199 ARG A 202 GLY A 210 SITE 2 AC2 9 ASN A 211 HIS A 241 ZN A 305 HOH A 406 SITE 3 AC2 9 HOH A 445 SITE 1 AC3 6 THR A 52 GLY A 53 GLU A 77 ARG A 78 SITE 2 AC3 6 HOH A 408 HOH A 485 SITE 1 AC4 2 GLY A 242 LYS A 243 SITE 1 AC5 6 ASP A 120 CYS A 199 HIS A 241 FMT A 302 SITE 2 AC5 6 ZN A 306 HOH A 445 SITE 1 AC6 5 HIS A 116 HIS A 118 HIS A 180 ZN A 305 SITE 2 AC6 5 HOH A 445 SITE 1 AC7 6 ILE A 162 TYR A 175 GLY A 178 GLU A 182 SITE 2 AC7 6 ASN A 216 TYR A 219 SITE 1 AC8 8 TYR A 81 ASP A 91 ALA A 95 ARG A 110 SITE 2 AC8 8 ALA A 127 MSE A 130 GLU A 169 HOH A 401 SITE 1 AC9 3 ASP A 80 TYR A 81 ARG A 110 CRYST1 77.668 77.668 240.998 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012875 0.007434 0.000000 0.00000 SCALE2 0.000000 0.014867 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004149 0.00000