data_6V5L # _entry.id 6V5L # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6V5L pdb_00006v5l 10.2210/pdb6v5l/pdb WWPDB D_1000245658 ? ? BMRB 30694 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'The HADDOCK structure model of GDP KRas in complex with its allosteric inhibitor E22' _pdbx_database_related.db_id 30694 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6V5L _pdbx_database_status.recvd_initial_deposition_date 2019-12-04 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wang, X.' 1 ? 'Gupta, A.K.' 2 ? 'Prakash, P.' 3 ? 'Putkey, J.P.' 4 ? 'Gorfe, A.A.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Chemical Biology & Drug Design' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 94 _citation.language ? _citation.page_first 1441 _citation.page_last 1456 _citation.title 'Multi target ensemble based virtual screening yields novel allosteric KRAS inhibitors at high success rate' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1111/cbdd _citation.pdbx_database_id_PubMed 30903639 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gupta, A.K.' 1 ? primary 'Wang, X.' 2 ? primary 'Pagba, C.V.' 3 ? primary 'Prakash, P.' 4 ? primary 'Putkey, J.P.' 5 ? primary 'Gorfe, A.A.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'GTPase KRas' 19271.760 1 ? ? ? ? 2 non-polymer syn "GUANOSINE-5'-DIPHOSPHATE" 443.201 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 non-polymer syn '(2R)-2-[2-(1H-indole-3-carbonyl)hydrazinyl]-2-phenylacetamide' 308.335 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'K-Ras 2,Ki-Ras,c-K-ras,c-Ki-ras' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV REIRKHKEK ; _entity_poly.pdbx_seq_one_letter_code_can ;MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV REIRKHKEK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 THR n 1 3 GLU n 1 4 TYR n 1 5 LYS n 1 6 LEU n 1 7 VAL n 1 8 VAL n 1 9 VAL n 1 10 GLY n 1 11 ALA n 1 12 GLY n 1 13 GLY n 1 14 VAL n 1 15 GLY n 1 16 LYS n 1 17 SER n 1 18 ALA n 1 19 LEU n 1 20 THR n 1 21 ILE n 1 22 GLN n 1 23 LEU n 1 24 ILE n 1 25 GLN n 1 26 ASN n 1 27 HIS n 1 28 PHE n 1 29 VAL n 1 30 ASP n 1 31 GLU n 1 32 TYR n 1 33 ASP n 1 34 PRO n 1 35 THR n 1 36 ILE n 1 37 GLU n 1 38 ASP n 1 39 SER n 1 40 TYR n 1 41 ARG n 1 42 LYS n 1 43 GLN n 1 44 VAL n 1 45 VAL n 1 46 ILE n 1 47 ASP n 1 48 GLY n 1 49 GLU n 1 50 THR n 1 51 CYS n 1 52 LEU n 1 53 LEU n 1 54 ASP n 1 55 ILE n 1 56 LEU n 1 57 ASP n 1 58 THR n 1 59 ALA n 1 60 GLY n 1 61 GLN n 1 62 GLU n 1 63 GLU n 1 64 TYR n 1 65 SER n 1 66 ALA n 1 67 MET n 1 68 ARG n 1 69 ASP n 1 70 GLN n 1 71 TYR n 1 72 MET n 1 73 ARG n 1 74 THR n 1 75 GLY n 1 76 GLU n 1 77 GLY n 1 78 PHE n 1 79 LEU n 1 80 CYS n 1 81 VAL n 1 82 PHE n 1 83 ALA n 1 84 ILE n 1 85 ASN n 1 86 ASN n 1 87 THR n 1 88 LYS n 1 89 SER n 1 90 PHE n 1 91 GLU n 1 92 ASP n 1 93 ILE n 1 94 HIS n 1 95 HIS n 1 96 TYR n 1 97 ARG n 1 98 GLU n 1 99 GLN n 1 100 ILE n 1 101 LYS n 1 102 ARG n 1 103 VAL n 1 104 LYS n 1 105 ASP n 1 106 SER n 1 107 GLU n 1 108 ASP n 1 109 VAL n 1 110 PRO n 1 111 MET n 1 112 VAL n 1 113 LEU n 1 114 VAL n 1 115 GLY n 1 116 ASN n 1 117 LYS n 1 118 CYS n 1 119 ASP n 1 120 LEU n 1 121 PRO n 1 122 SER n 1 123 ARG n 1 124 THR n 1 125 VAL n 1 126 ASP n 1 127 THR n 1 128 LYS n 1 129 GLN n 1 130 ALA n 1 131 GLN n 1 132 ASP n 1 133 LEU n 1 134 ALA n 1 135 ARG n 1 136 SER n 1 137 TYR n 1 138 GLY n 1 139 ILE n 1 140 PRO n 1 141 PHE n 1 142 ILE n 1 143 GLU n 1 144 THR n 1 145 SER n 1 146 ALA n 1 147 LYS n 1 148 THR n 1 149 ARG n 1 150 GLN n 1 151 GLY n 1 152 VAL n 1 153 ASP n 1 154 ASP n 1 155 ALA n 1 156 PHE n 1 157 TYR n 1 158 THR n 1 159 LEU n 1 160 VAL n 1 161 ARG n 1 162 GLU n 1 163 ILE n 1 164 ARG n 1 165 LYS n 1 166 HIS n 1 167 LYS n 1 168 GLU n 1 169 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 169 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'KRAS, KRAS2, RASK2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RASK_HUMAN _struct_ref.pdbx_db_accession P01116 _struct_ref.pdbx_db_isoform P01116-2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV REIRKHKEK ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6V5L _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 169 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P01116 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 169 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 169 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 QPD non-polymer . '(2R)-2-[2-(1H-indole-3-carbonyl)hydrazinyl]-2-phenylacetamide' ? 'C17 H16 N4 O2' 308.335 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '3D HNCACB' 1 isotropic 2 1 1 '3D CBCA(CO)NH' 1 isotropic 3 1 1 '3D HNCO' 1 isotropic 4 1 1 '3D NOESY 15N HSQC' 1 isotropic 6 1 1 '2D 15N HSQC' 1 isotropic 7 2 2 '2D 13C HSQC' 1 isotropic 8 2 2 '3D CCH-TOCSY' 1 isotropic 9 2 2 '3D NOESY 13C HSQC' 1 isotropic 10 2 2 'F1 13C 15N filtered 3D NOESY 13C HSQC' 1 isotropic # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298 Pa 1 7.4 115 ? ? mM 'GDP KRas_E22_H2O' ? pH ? ? K 2 298 Pa 1 7.4 115 ? ? mM 'GDP KRas_E22_D2O' ? pD ? ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 ;0.8 mM [U-99% 13C; U-99% 15N] KRAS, 1.0 mM E22, 5 mM [U-99% 2H] DTT, 10 uM [U-99% 2H] DSS, 25 mM nature abundance sodium phosphate, 50 mM sodium chloride, 5 mM MAGNESIUM ION, 95% H2O/5% D2O ; '95% H2O/5% D2O' 'GDP KRas_E22_H2O' solution '25 mM sodium phosphate, 50 mM NaCl, 5 mM MgCl2, 5 mM d10 DTT, and 10 microM DSS, 95% H2O/5% D2O.' 2 ;0.8 mM [U-99% 13C; U-99% 15N] KRas, 1.0 mM E22, 5 mM [U-99% 2H] DTT, 10 uM [U-99% 2H] DSS, 25 mM sodium phosphate, 50 mM sodium chloride, 5 mM MAGNESIUM ION, 100% D2O ; '100% D2O' 'GDP KRas_E22_D2O' solution '25 mM sodium phosphate, 50 mM NaCl, 5 mM MgCl2, 5 mM d10 DTT, and 10 microM DSS, 99.99% D2O.' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details cryoprobe # _pdbx_nmr_refine.entry_id 6V5L _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 4 # _pdbx_nmr_ensemble.entry_id 6V5L _pdbx_nmr_ensemble.conformers_calculated_total_number 1000 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6V5L _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection TopSpin 2 'Bruker Biospin' 2 processing NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 3 'data analysis' NMRView ? 'Johnson, One Moon Scientific' 4 'structure calculation' HADDOCK ? Bonvin 5 refinement HADDOCK ? Bonvin 6 'chemical shift assignment' NMRView ? 'Johnson, One Moon Scientific' 7 'peak picking' NMRView ? 'Johnson, One Moon Scientific' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6V5L _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6V5L _struct.title 'The HADDOCK structure model of GDP KRas in complex with its allosteric inhibitor E22' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6V5L _struct_keywords.text 'KRas, allosteric inhibitor, drug discovery, HADDOCK, TRANSFERASE-TRANSFERASE inhibitor complex, Signaling Protein-Inhibitor complex' _struct_keywords.pdbx_keywords 'Signaling Protein/Inhibitor' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 15 ? ASN A 26 ? GLY A 15 ASN A 26 1 ? 12 HELX_P HELX_P2 AA2 TYR A 64 ? GLY A 75 ? TYR A 64 GLY A 75 1 ? 12 HELX_P HELX_P3 AA3 ASN A 86 ? ASP A 105 ? ASN A 86 ASP A 105 1 ? 20 HELX_P HELX_P4 AA4 ASP A 126 ? GLY A 138 ? ASP A 126 GLY A 138 1 ? 13 HELX_P HELX_P5 AA5 GLY A 151 ? GLU A 168 ? GLY A 151 GLU A 168 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 SER A 39 ? ILE A 46 ? SER A 39 ILE A 46 AA1 2 GLU A 49 ? ASP A 57 ? GLU A 49 ASP A 57 AA1 3 THR A 2 ? VAL A 9 ? THR A 2 VAL A 9 AA1 4 GLY A 77 ? ALA A 83 ? GLY A 77 ALA A 83 AA1 5 MET A 111 ? ASN A 116 ? MET A 111 ASN A 116 AA1 6 PHE A 141 ? GLU A 143 ? PHE A 141 GLU A 143 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LYS A 42 ? N LYS A 42 O LEU A 53 ? O LEU A 53 AA1 2 3 O ASP A 54 ? O ASP A 54 N TYR A 4 ? N TYR A 4 AA1 3 4 N VAL A 7 ? N VAL A 7 O LEU A 79 ? O LEU A 79 AA1 4 5 N CYS A 80 ? N CYS A 80 O VAL A 114 ? O VAL A 114 AA1 5 6 N LEU A 113 ? N LEU A 113 O ILE A 142 ? O ILE A 142 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GDP 201 ? 17 'binding site for residue GDP A 201' AC2 Software A MG 202 ? 4 'binding site for residue MG A 202' AC3 Software A QPD 203 ? 7 'binding site for residue QPD A 203' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 17 GLY A 13 ? GLY A 13 . ? 1_555 ? 2 AC1 17 VAL A 14 ? VAL A 14 . ? 1_555 ? 3 AC1 17 GLY A 15 ? GLY A 15 . ? 1_555 ? 4 AC1 17 LYS A 16 ? LYS A 16 . ? 1_555 ? 5 AC1 17 SER A 17 ? SER A 17 . ? 1_555 ? 6 AC1 17 ALA A 18 ? ALA A 18 . ? 1_555 ? 7 AC1 17 PHE A 28 ? PHE A 28 . ? 1_555 ? 8 AC1 17 VAL A 29 ? VAL A 29 . ? 1_555 ? 9 AC1 17 ASP A 30 ? ASP A 30 . ? 1_555 ? 10 AC1 17 ASP A 57 ? ASP A 57 . ? 1_555 ? 11 AC1 17 ASN A 116 ? ASN A 116 . ? 1_555 ? 12 AC1 17 ASP A 119 ? ASP A 119 . ? 1_555 ? 13 AC1 17 LEU A 120 ? LEU A 120 . ? 1_555 ? 14 AC1 17 SER A 145 ? SER A 145 . ? 1_555 ? 15 AC1 17 ALA A 146 ? ALA A 146 . ? 1_555 ? 16 AC1 17 LYS A 147 ? LYS A 147 . ? 1_555 ? 17 AC1 17 MG C . ? MG A 202 . ? 1_555 ? 18 AC2 4 SER A 17 ? SER A 17 . ? 1_555 ? 19 AC2 4 ASP A 57 ? ASP A 57 . ? 1_555 ? 20 AC2 4 THR A 58 ? THR A 58 . ? 1_555 ? 21 AC2 4 GDP B . ? GDP A 201 . ? 1_555 ? 22 AC3 7 LYS A 5 ? LYS A 5 . ? 1_555 ? 23 AC3 7 LEU A 6 ? LEU A 6 . ? 1_555 ? 24 AC3 7 VAL A 7 ? VAL A 7 . ? 1_555 ? 25 AC3 7 ASP A 54 ? ASP A 54 . ? 1_555 ? 26 AC3 7 LEU A 56 ? LEU A 56 . ? 1_555 ? 27 AC3 7 GLN A 70 ? GLN A 70 . ? 1_555 ? 28 AC3 7 TYR A 71 ? TYR A 71 . ? 1_555 ? # _atom_sites.entry_id 6V5L _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 THR 2 2 2 THR THR A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 TYR 4 4 4 TYR TYR A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 GLN 22 22 22 GLN GLN A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 ASN 26 26 26 ASN ASN A . n A 1 27 HIS 27 27 27 HIS HIS A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 TYR 32 32 32 TYR TYR A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 PRO 34 34 34 PRO PRO A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 ILE 36 36 36 ILE ILE A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 TYR 40 40 40 TYR TYR A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 GLN 43 43 43 GLN GLN A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 THR 50 50 50 THR THR A . n A 1 51 CYS 51 51 51 CYS CYS A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 ASP 57 57 57 ASP ASP A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 TYR 64 64 64 TYR TYR A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 MET 67 67 67 MET MET A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 ASP 69 69 69 ASP ASP A . n A 1 70 GLN 70 70 70 GLN GLN A . n A 1 71 TYR 71 71 71 TYR TYR A . n A 1 72 MET 72 72 72 MET MET A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 GLY 77 77 77 GLY GLY A . n A 1 78 PHE 78 78 78 PHE PHE A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 CYS 80 80 80 CYS CYS A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 PHE 82 82 82 PHE PHE A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ASN 85 85 85 ASN ASN A . n A 1 86 ASN 86 86 86 ASN ASN A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 LYS 88 88 88 LYS LYS A . n A 1 89 SER 89 89 89 SER SER A . n A 1 90 PHE 90 90 90 PHE PHE A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 ASP 92 92 92 ASP ASP A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 HIS 94 94 94 HIS HIS A . n A 1 95 HIS 95 95 95 HIS HIS A . n A 1 96 TYR 96 96 96 TYR TYR A . n A 1 97 ARG 97 97 97 ARG ARG A . n A 1 98 GLU 98 98 98 GLU GLU A . n A 1 99 GLN 99 99 99 GLN GLN A . n A 1 100 ILE 100 100 100 ILE ILE A . n A 1 101 LYS 101 101 101 LYS LYS A . n A 1 102 ARG 102 102 102 ARG ARG A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 SER 106 106 106 SER SER A . n A 1 107 GLU 107 107 107 GLU GLU A . n A 1 108 ASP 108 108 108 ASP ASP A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 PRO 110 110 110 PRO PRO A . n A 1 111 MET 111 111 111 MET MET A . n A 1 112 VAL 112 112 112 VAL VAL A . n A 1 113 LEU 113 113 113 LEU LEU A . n A 1 114 VAL 114 114 114 VAL VAL A . n A 1 115 GLY 115 115 115 GLY GLY A . n A 1 116 ASN 116 116 116 ASN ASN A . n A 1 117 LYS 117 117 117 LYS LYS A . n A 1 118 CYS 118 118 118 CYS CYS A . n A 1 119 ASP 119 119 119 ASP ASP A . n A 1 120 LEU 120 120 120 LEU LEU A . n A 1 121 PRO 121 121 121 PRO PRO A . n A 1 122 SER 122 122 122 SER SER A . n A 1 123 ARG 123 123 123 ARG ARG A . n A 1 124 THR 124 124 124 THR THR A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 ASP 126 126 126 ASP ASP A . n A 1 127 THR 127 127 127 THR THR A . n A 1 128 LYS 128 128 128 LYS LYS A . n A 1 129 GLN 129 129 129 GLN GLN A . n A 1 130 ALA 130 130 130 ALA ALA A . n A 1 131 GLN 131 131 131 GLN GLN A . n A 1 132 ASP 132 132 132 ASP ASP A . n A 1 133 LEU 133 133 133 LEU LEU A . n A 1 134 ALA 134 134 134 ALA ALA A . n A 1 135 ARG 135 135 135 ARG ARG A . n A 1 136 SER 136 136 136 SER SER A . n A 1 137 TYR 137 137 137 TYR TYR A . n A 1 138 GLY 138 138 138 GLY GLY A . n A 1 139 ILE 139 139 139 ILE ILE A . n A 1 140 PRO 140 140 140 PRO PRO A . n A 1 141 PHE 141 141 141 PHE PHE A . n A 1 142 ILE 142 142 142 ILE ILE A . n A 1 143 GLU 143 143 143 GLU GLU A . n A 1 144 THR 144 144 144 THR THR A . n A 1 145 SER 145 145 145 SER SER A . n A 1 146 ALA 146 146 146 ALA ALA A . n A 1 147 LYS 147 147 147 LYS LYS A . n A 1 148 THR 148 148 148 THR THR A . n A 1 149 ARG 149 149 149 ARG ARG A . n A 1 150 GLN 150 150 150 GLN GLN A . n A 1 151 GLY 151 151 151 GLY GLY A . n A 1 152 VAL 152 152 152 VAL VAL A . n A 1 153 ASP 153 153 153 ASP ASP A . n A 1 154 ASP 154 154 154 ASP ASP A . n A 1 155 ALA 155 155 155 ALA ALA A . n A 1 156 PHE 156 156 156 PHE PHE A . n A 1 157 TYR 157 157 157 TYR TYR A . n A 1 158 THR 158 158 158 THR THR A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 VAL 160 160 160 VAL VAL A . n A 1 161 ARG 161 161 161 ARG ARG A . n A 1 162 GLU 162 162 162 GLU GLU A . n A 1 163 ILE 163 163 163 ILE ILE A . n A 1 164 ARG 164 164 164 ARG ARG A . n A 1 165 LYS 165 165 165 LYS LYS A . n A 1 166 HIS 166 166 166 HIS HIS A . n A 1 167 LYS 167 167 167 LYS LYS A . n A 1 168 GLU 168 168 168 GLU GLU A . n A 1 169 LYS 169 169 169 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP 1 201 201 GDP GDP A . C 3 MG 1 202 202 MG MG A . D 4 QPD 1 203 300 QPD E22 A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-12-18 2 'Structure model' 1 1 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' database_2 2 2 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_database_status.status_code_nmr_data' # _pdbx_entry_details.entry_id 6V5L _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 KRAS 0.8 ? mM '[U-99% 13C; U-99% 15N]' 1 E22 1.0 ? mM 'natural abundance' 1 DTT 5 ? mM '[U-99% 2H]' 1 DSS 10 ? uM '[U-99% 2H]' 1 'sodium phosphate' 25 ? mM 'nature abundance' 1 'sodium chloride' 50 ? mM 'natural abundance' 1 'MAGNESIUM ION' 5 ? mM 'natural abundance' 2 KRas 0.8 ? mM '[U-99% 13C; U-99% 15N]' 2 E22 1.0 ? mM 'natural abundance' 2 DTT 5 ? mM '[U-99% 2H]' 2 DSS 10 ? uM '[U-99% 2H]' 2 'sodium phosphate' 25 ? mM 'natural abundance' 2 'sodium chloride' 50 ? mM 'natural abundance' 2 'MAGNESIUM ION' 5 ? mM 'natural abundance' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HZ3 A LYS 5 ? ? OD2 A ASP 54 ? ? 1.57 2 1 OD1 A ASP 33 ? ? HG1 A THR 35 ? ? 1.57 3 1 HH11 A ARG 41 ? ? OD1 A ASP 54 ? ? 1.59 4 1 OD2 A ASP 57 ? ? MG A MG 202 ? ? 1.64 5 1 OD1 A ASP 57 ? ? MG A MG 202 ? ? 1.66 6 1 OG A SER 17 ? ? MG A MG 202 ? ? 1.69 7 2 OD2 A ASP 57 ? ? MG A MG 202 ? ? 1.56 8 2 OD1 A ASP 119 ? ? HG A SER 145 ? ? 1.60 9 3 HZ3 A LYS 5 ? ? OD1 A ASP 54 ? ? 1.58 10 3 HH11 A ARG 41 ? ? OD2 A ASP 54 ? ? 1.59 11 3 OD1 A ASP 33 ? ? HG1 A THR 35 ? ? 1.59 12 3 HH12 A ARG 123 ? ? OE2 A GLU 143 ? ? 1.60 13 3 OD1 A ASP 57 ? ? MG A MG 202 ? ? 1.60 14 3 OD2 A ASP 57 ? ? MG A MG 202 ? ? 1.62 15 3 OG A SER 17 ? ? MG A MG 202 ? ? 1.64 16 4 HH12 A ARG 123 ? ? OE2 A GLU 143 ? ? 1.54 17 4 HH11 A ARG 41 ? ? OD1 A ASP 54 ? ? 1.57 18 4 OD2 A ASP 57 ? ? MG A MG 202 ? ? 1.62 19 4 OG A SER 17 ? ? MG A MG 202 ? ? 1.68 20 5 OD1 A ASP 57 ? ? MG A MG 202 ? ? 1.63 21 5 OD2 A ASP 57 ? ? MG A MG 202 ? ? 1.65 22 5 OG A SER 17 ? ? MG A MG 202 ? ? 1.69 23 6 HZ3 A LYS 5 ? ? OD2 A ASP 54 ? ? 1.59 24 6 HH11 A ARG 41 ? ? OD1 A ASP 54 ? ? 1.59 25 6 OD2 A ASP 57 ? ? MG A MG 202 ? ? 1.60 26 6 OG A SER 17 ? ? MG A MG 202 ? ? 1.62 27 6 OD1 A ASP 57 ? ? MG A MG 202 ? ? 1.65 28 7 HZ3 A LYS 5 ? ? OD2 A ASP 54 ? ? 1.57 29 7 OD1 A ASP 47 ? ? HH21 A ARG 161 ? ? 1.59 30 7 OD1 A ASP 33 ? ? HG1 A THR 35 ? ? 1.60 31 7 OD2 A ASP 57 ? ? MG A MG 202 ? ? 1.61 32 7 OD1 A ASP 57 ? ? MG A MG 202 ? ? 1.68 33 7 OG A SER 17 ? ? MG A MG 202 ? ? 1.69 34 8 OD2 A ASP 47 ? ? HH12 A ARG 164 ? ? 1.55 35 8 HH12 A ARG 123 ? ? OE2 A GLU 143 ? ? 1.56 36 8 OD2 A ASP 57 ? ? MG A MG 202 ? ? 1.58 37 8 OG A SER 17 ? ? MG A MG 202 ? ? 1.62 38 8 OD1 A ASP 57 ? ? MG A MG 202 ? ? 1.65 39 9 OD1 A ASP 33 ? ? HG1 A THR 35 ? ? 1.59 40 9 OD2 A ASP 57 ? ? MG A MG 202 ? ? 1.61 41 9 OD1 A ASP 57 ? ? MG A MG 202 ? ? 1.67 42 10 HZ3 A LYS 101 ? ? OE1 A GLU 107 ? ? 1.57 43 10 HH22 A ARG 68 ? ? OD1 A ASP 69 ? ? 1.57 44 10 HZ2 A LYS 5 ? ? OD2 A ASP 54 ? ? 1.59 45 10 OD2 A ASP 57 ? ? MG A MG 202 ? ? 1.61 46 10 OD1 A ASP 57 ? ? MG A MG 202 ? ? 1.67 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 117 ? ? 72.58 31.79 2 2 PRO A 110 ? ? -56.75 106.39 3 2 SER A 145 ? ? -161.41 114.69 4 3 GLU A 37 ? ? -118.01 79.49 5 4 ALA A 59 ? ? -98.54 -63.92 6 4 PRO A 110 ? ? -59.84 108.09 7 5 ALA A 59 ? ? -86.76 -73.20 8 5 LYS A 117 ? ? 71.39 41.27 9 6 PRO A 110 ? ? -49.69 107.52 10 7 PRO A 110 ? ? -53.98 109.18 11 7 SER A 122 ? ? 66.15 60.28 12 7 GLN A 150 ? ? -69.83 94.66 13 8 ASP A 105 ? ? 55.73 70.81 14 8 GLU A 107 ? ? -125.41 -55.21 15 9 ILE A 24 ? ? -104.30 -64.88 16 9 PRO A 110 ? ? -58.57 104.23 17 10 ASP A 105 ? ? 64.66 60.25 18 10 PRO A 121 ? ? -79.75 -169.81 # _pdbx_audit_support.funding_organization 'Other private' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 'CPRIT Grant No DP150093' _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id QPD _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id QPD _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-DIPHOSPHATE" GDP 3 'MAGNESIUM ION' MG 4 '(2R)-2-[2-(1H-indole-3-carbonyl)hydrazinyl]-2-phenylacetamide' QPD # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #