HEADER TRANSFERASE/STRUCTURAL PROTEIN 04-DEC-19 6V62 TITLE SETD3 DOUBLE MUTANT (N255F/W273A) IN COMPLEX WITH AN ACTIN PEPTIDE TITLE 2 WITH HIS73 REPLACED WITH LYSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIN, CYTOPLASMIC 1; COMPND 3 CHAIN: Y; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ACTIN-HISTIDINE N-METHYLTRANSFERASE; COMPND 8 CHAIN: A; COMPND 9 SYNONYM: SET DOMAIN-CONTAINING PROTEIN 3,HSETD3; COMPND 10 EC: 2.1.1.85; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 GENE: SETD3, C14ORF154; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, TRANSFERASE-STRUCTURAL PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.DAI,J.R.HORTON,X.CHENG REVDAT 4 11-OCT-23 6V62 1 REMARK REVDAT 3 11-MAR-20 6V62 1 JRNL REVDAT 2 22-JAN-20 6V62 1 JRNL REVDAT 1 15-JAN-20 6V62 0 JRNL AUTH S.DAI,J.R.HORTON,A.W.WILKINSON,O.GOZANI,X.ZHANG,X.CHENG JRNL TITL AN ENGINEERED VARIANT OF SETD3 METHYLTRANSFERASE ALTERS JRNL TITL 2 TARGET SPECIFICITY FROM HISTIDINE TO LYSINE METHYLATION. JRNL REF J.BIOL.CHEM. V. 295 2582 2020 JRNL REFN ESSN 1083-351X JRNL PMID 31911441 JRNL DOI 10.1074/JBC.RA119.012319 REMARK 2 REMARK 2 RESOLUTION. 2.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.15.2_3472) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 24735 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1235 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.4900 - 4.9000 0.99 2862 151 0.1854 0.2308 REMARK 3 2 4.9000 - 3.8900 0.99 2744 144 0.1655 0.1824 REMARK 3 3 3.8900 - 3.4000 0.99 2753 145 0.1858 0.2265 REMARK 3 4 3.4000 - 3.0900 1.00 2725 143 0.2283 0.2989 REMARK 3 5 3.0900 - 2.8700 0.99 2686 142 0.2391 0.2672 REMARK 3 6 2.8700 - 2.7000 0.96 2632 138 0.2531 0.3430 REMARK 3 7 2.7000 - 2.5600 0.92 2499 131 0.2650 0.3241 REMARK 3 8 2.5600 - 2.4500 0.87 2361 124 0.2643 0.3070 REMARK 3 9 2.4500 - 2.3600 0.83 2238 117 0.2683 0.3264 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.327 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.071 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4120 REMARK 3 ANGLE : 0.524 5591 REMARK 3 CHIRALITY : 0.042 620 REMARK 3 PLANARITY : 0.003 717 REMARK 3 DIHEDRAL : 18.274 1502 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6V62 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1000245779. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24952 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.18200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6MBJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M SODIUM REMARK 280 CITRATE TRIBASIC DIHYDRATE PH 5.6 AND 30% (W/V) POLYETHYLENE REMARK 280 GLYCOL 4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.18850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 87.18850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.32700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.37600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.32700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.37600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 87.18850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.32700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.37600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 87.18850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.32700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.37600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: Y, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS Y 84 REMARK 465 ILE Y 85 REMARK 465 TRP Y 86 REMARK 465 HIS Y 87 REMARK 465 HIS Y 88 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 SER A 4 REMARK 465 ARG A 5 REMARK 465 VAL A 6 REMARK 465 LYS A 7 REMARK 465 THR A 8 REMARK 465 GLN A 9 REMARK 465 LYS A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 THR A 13 REMARK 465 GLY A 14 REMARK 465 ALA A 15 REMARK 465 THR A 16 REMARK 465 ALA A 17 REMARK 465 THR A 18 REMARK 465 GLU A 503 REMARK 465 SER A 504 REMARK 465 ASN A 505 REMARK 465 LEU A 506 REMARK 465 GLY A 507 REMARK 465 LEU A 508 REMARK 465 LEU A 509 REMARK 465 GLU A 510 REMARK 465 SER A 511 REMARK 465 SER A 512 REMARK 465 VAL A 513 REMARK 465 GLY A 514 REMARK 465 ASP A 515 REMARK 465 SER A 516 REMARK 465 ARG A 517 REMARK 465 LEU A 518 REMARK 465 PRO A 519 REMARK 465 LEU A 520 REMARK 465 VAL A 521 REMARK 465 LEU A 522 REMARK 465 ARG A 523 REMARK 465 ASN A 524 REMARK 465 LEU A 525 REMARK 465 GLU A 526 REMARK 465 GLU A 527 REMARK 465 GLU A 528 REMARK 465 ALA A 529 REMARK 465 GLY A 530 REMARK 465 VAL A 531 REMARK 465 GLN A 532 REMARK 465 ASP A 533 REMARK 465 ALA A 534 REMARK 465 LEU A 535 REMARK 465 ASN A 536 REMARK 465 ILE A 537 REMARK 465 ARG A 538 REMARK 465 GLU A 539 REMARK 465 ALA A 540 REMARK 465 ILE A 541 REMARK 465 SER A 542 REMARK 465 LYS A 543 REMARK 465 ALA A 544 REMARK 465 LYS A 545 REMARK 465 ALA A 546 REMARK 465 THR A 547 REMARK 465 GLU A 548 REMARK 465 ASN A 549 REMARK 465 GLY A 550 REMARK 465 LEU A 551 REMARK 465 VAL A 552 REMARK 465 ASN A 553 REMARK 465 GLY A 554 REMARK 465 GLU A 555 REMARK 465 ASN A 556 REMARK 465 SER A 557 REMARK 465 ILE A 558 REMARK 465 PRO A 559 REMARK 465 ASN A 560 REMARK 465 GLY A 561 REMARK 465 THR A 562 REMARK 465 ARG A 563 REMARK 465 SER A 564 REMARK 465 GLU A 565 REMARK 465 ASN A 566 REMARK 465 GLU A 567 REMARK 465 SER A 568 REMARK 465 LEU A 569 REMARK 465 ASN A 570 REMARK 465 GLN A 571 REMARK 465 GLU A 572 REMARK 465 SER A 573 REMARK 465 LYS A 574 REMARK 465 ARG A 575 REMARK 465 ALA A 576 REMARK 465 VAL A 577 REMARK 465 GLU A 578 REMARK 465 ASP A 579 REMARK 465 ALA A 580 REMARK 465 LYS A 581 REMARK 465 GLY A 582 REMARK 465 SER A 583 REMARK 465 SER A 584 REMARK 465 SER A 585 REMARK 465 ASP A 586 REMARK 465 SER A 587 REMARK 465 THR A 588 REMARK 465 ALA A 589 REMARK 465 GLY A 590 REMARK 465 VAL A 591 REMARK 465 LYS A 592 REMARK 465 GLU A 593 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR Y 66 OG1 CG2 REMARK 470 GLU Y 83 CG CD OE1 OE2 REMARK 470 VAL A 19 CG1 CG2 REMARK 470 LYS A 22 CB CG CD CE NZ REMARK 470 LEU A 25 CG CD1 CD2 REMARK 470 SER A 29 OG REMARK 470 GLN A 33 CG CD OE1 NE2 REMARK 470 LYS A 44 CG CD CE NZ REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 GLU A 131 CG CD OE1 OE2 REMARK 470 GLN A 144 CG CD OE1 NE2 REMARK 470 ARG A 146 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 221 CG CD CE NZ REMARK 470 LYS A 231 CG CD CE NZ REMARK 470 LYS A 235 CG CD CE NZ REMARK 470 ASP A 236 CG OD1 OD2 REMARK 470 GLU A 260 CG CD OE1 OE2 REMARK 470 ARG A 264 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 344 CG CD CE NZ REMARK 470 GLU A 445 CG CD OE1 OE2 REMARK 470 LYS A 452 CD CE NZ REMARK 470 LYS A 479 CG CD CE NZ REMARK 470 ARG A 489 NE CZ NH1 NH2 REMARK 470 GLU A 493 CG CD OE1 OE2 REMARK 470 GLU A 494 CG CD OE1 OE2 REMARK 470 LYS A 495 CD CE NZ REMARK 470 LYS A 500 CG CD CE NZ REMARK 470 TYR A 501 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 502 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 263 -71.09 -69.13 REMARK 500 LEU A 272 -51.30 64.58 REMARK 500 THR A 314 40.43 -79.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 606 DBREF 6V62 Y 66 88 UNP C9JUM1 C9JUM1_HUMAN 66 88 DBREF 6V62 A 0 593 UNP Q86TU7 SETD3_HUMAN 1 594 SEQADV 6V62 LYS Y 73 UNP C9JUM1 HIS 73 ENGINEERED MUTATION SEQADV 6V62 GLY A -2 UNP Q86TU7 EXPRESSION TAG SEQADV 6V62 SER A -1 UNP Q86TU7 EXPRESSION TAG SEQADV 6V62 PHE A 255 UNP Q86TU7 ASN 256 ENGINEERED MUTATION SEQADV 6V62 ALA A 273 UNP Q86TU7 TRP 274 ENGINEERED MUTATION SEQRES 1 Y 23 THR LEU LYS TYR PRO ILE GLU LYS GLY ILE VAL THR ASN SEQRES 2 Y 23 TRP ASP ASP MET GLU LYS ILE TRP HIS HIS SEQRES 1 A 596 GLY SER MET GLY LYS LYS SER ARG VAL LYS THR GLN LYS SEQRES 2 A 596 SER GLY THR GLY ALA THR ALA THR VAL SER PRO LYS GLU SEQRES 3 A 596 ILE LEU ASN LEU THR SER GLU LEU LEU GLN LYS CYS SER SEQRES 4 A 596 SER PRO ALA PRO GLY PRO GLY LYS GLU TRP GLU GLU TYR SEQRES 5 A 596 VAL GLN ILE ARG THR LEU VAL GLU LYS ILE ARG LYS LYS SEQRES 6 A 596 GLN LYS GLY LEU SER VAL THR PHE ASP GLY LYS ARG GLU SEQRES 7 A 596 ASP TYR PHE PRO ASP LEU MET LYS TRP ALA SER GLU ASN SEQRES 8 A 596 GLY ALA SER VAL GLU GLY PHE GLU MET VAL ASN PHE LYS SEQRES 9 A 596 GLU GLU GLY PHE GLY LEU ARG ALA THR ARG ASP ILE LYS SEQRES 10 A 596 ALA GLU GLU LEU PHE LEU TRP VAL PRO ARG LYS LEU LEU SEQRES 11 A 596 MET THR VAL GLU SER ALA LYS ASN SER VAL LEU GLY PRO SEQRES 12 A 596 LEU TYR SER GLN ASP ARG ILE LEU GLN ALA MET GLY ASN SEQRES 13 A 596 ILE ALA LEU ALA PHE HIS LEU LEU CYS GLU ARG ALA SER SEQRES 14 A 596 PRO ASN SER PHE TRP GLN PRO TYR ILE GLN THR LEU PRO SEQRES 15 A 596 SER GLU TYR ASP THR PRO LEU TYR PHE GLU GLU ASP GLU SEQRES 16 A 596 VAL ARG TYR LEU GLN SER THR GLN ALA ILE HIS ASP VAL SEQRES 17 A 596 PHE SER GLN TYR LYS ASN THR ALA ARG GLN TYR ALA TYR SEQRES 18 A 596 PHE TYR LYS VAL ILE GLN THR HIS PRO HIS ALA ASN LYS SEQRES 19 A 596 LEU PRO LEU LYS ASP SER PHE THR TYR GLU ASP TYR ARG SEQRES 20 A 596 TRP ALA VAL SER SER VAL MET THR ARG GLN PHE GLN ILE SEQRES 21 A 596 PRO THR GLU ASP GLY SER ARG VAL THR LEU ALA LEU ILE SEQRES 22 A 596 PRO LEU ALA ASP MET CYS ASN HIS THR ASN GLY LEU ILE SEQRES 23 A 596 THR THR GLY TYR ASN LEU GLU ASP ASP ARG CYS GLU CYS SEQRES 24 A 596 VAL ALA LEU GLN ASP PHE ARG ALA GLY GLU GLN ILE TYR SEQRES 25 A 596 ILE PHE TYR GLY THR ARG SER ASN ALA GLU PHE VAL ILE SEQRES 26 A 596 HIS SER GLY PHE PHE PHE ASP ASN ASN SER HIS ASP ARG SEQRES 27 A 596 VAL LYS ILE LYS LEU GLY VAL SER LYS SER ASP ARG LEU SEQRES 28 A 596 TYR ALA MET LYS ALA GLU VAL LEU ALA ARG ALA GLY ILE SEQRES 29 A 596 PRO THR SER SER VAL PHE ALA LEU HIS PHE THR GLU PRO SEQRES 30 A 596 PRO ILE SER ALA GLN LEU LEU ALA PHE LEU ARG VAL PHE SEQRES 31 A 596 CYS MET THR GLU GLU GLU LEU LYS GLU HIS LEU LEU GLY SEQRES 32 A 596 ASP SER ALA ILE ASP ARG ILE PHE THR LEU GLY ASN SER SEQRES 33 A 596 GLU PHE PRO VAL SER TRP ASP ASN GLU VAL LYS LEU TRP SEQRES 34 A 596 THR PHE LEU GLU ASP ARG ALA SER LEU LEU LEU LYS THR SEQRES 35 A 596 TYR LYS THR THR ILE GLU GLU ASP LYS SER VAL LEU LYS SEQRES 36 A 596 ASN HIS ASP LEU SER VAL ARG ALA LYS MET ALA ILE LYS SEQRES 37 A 596 LEU ARG LEU GLY GLU LYS GLU ILE LEU GLU LYS ALA VAL SEQRES 38 A 596 LYS SER ALA ALA VAL ASN ARG GLU TYR TYR ARG GLN GLN SEQRES 39 A 596 MET GLU GLU LYS ALA PRO LEU PRO LYS TYR GLU GLU SER SEQRES 40 A 596 ASN LEU GLY LEU LEU GLU SER SER VAL GLY ASP SER ARG SEQRES 41 A 596 LEU PRO LEU VAL LEU ARG ASN LEU GLU GLU GLU ALA GLY SEQRES 42 A 596 VAL GLN ASP ALA LEU ASN ILE ARG GLU ALA ILE SER LYS SEQRES 43 A 596 ALA LYS ALA THR GLU ASN GLY LEU VAL ASN GLY GLU ASN SEQRES 44 A 596 SER ILE PRO ASN GLY THR ARG SER GLU ASN GLU SER LEU SEQRES 45 A 596 ASN GLN GLU SER LYS ARG ALA VAL GLU ASP ALA LYS GLY SEQRES 46 A 596 SER SER SER ASP SER THR ALA GLY VAL LYS GLU HET SAH A 601 26 HET EDO A 602 4 HET EDO A 603 4 HET EDO A 604 4 HET EDO A 605 4 HET EDO A 606 4 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SAH C14 H20 N6 O5 S FORMUL 4 EDO 5(C2 H6 O2) FORMUL 9 HOH *187(H2 O) HELIX 1 AA1 SER A 20 SER A 36 1 17 HELIX 2 AA2 GLY A 41 GLY A 43 5 3 HELIX 3 AA3 LYS A 44 LYS A 61 1 18 HELIX 4 AA4 LYS A 73 ASP A 76 5 4 HELIX 5 AA5 TYR A 77 GLU A 87 1 11 HELIX 6 AA6 LYS A 125 LEU A 127 5 3 HELIX 7 AA7 VAL A 130 ASN A 135 1 6 HELIX 8 AA8 LEU A 138 ASP A 145 1 8 HELIX 9 AA9 ASP A 145 MET A 151 1 7 HELIX 10 AB1 MET A 151 ALA A 165 1 15 HELIX 11 AB2 TRP A 171 GLN A 176 1 6 HELIX 12 AB3 THR A 184 PHE A 188 5 5 HELIX 13 AB4 GLU A 189 TYR A 195 1 7 HELIX 14 AB5 ALA A 201 HIS A 226 1 26 HELIX 15 AB6 PRO A 227 ASN A 230 5 4 HELIX 16 AB7 LEU A 232 ASP A 236 5 5 HELIX 17 AB8 THR A 239 GLN A 254 1 16 HELIX 18 AB9 LEU A 272 CYS A 276 5 5 HELIX 19 AC1 SER A 316 HIS A 323 1 8 HELIX 20 AC2 LEU A 348 ALA A 359 1 12 HELIX 21 AC3 SER A 377 CYS A 388 1 12 HELIX 22 AC4 THR A 390 HIS A 397 1 8 HELIX 23 AC5 SER A 402 THR A 409 1 8 HELIX 24 AC6 SER A 418 LYS A 438 1 21 HELIX 25 AC7 THR A 443 HIS A 454 1 12 HELIX 26 AC8 SER A 457 GLU A 494 1 38 SHEET 1 AA1 4 PHE A 95 PHE A 100 0 SHEET 2 AA1 4 GLY A 104 ALA A 109 -1 O ARG A 108 N GLU A 96 SHEET 3 AA1 4 GLN A 307 ILE A 310 -1 O ILE A 308 N LEU A 107 SHEET 4 AA1 4 ASN A 277 HIS A 278 1 N ASN A 277 O ILE A 310 SHEET 1 AA2 3 LEU A 118 PRO A 123 0 SHEET 2 AA2 3 ARG A 293 VAL A 297 -1 O CYS A 294 N VAL A 122 SHEET 3 AA2 3 THR A 285 ASN A 288 -1 N GLY A 286 O GLU A 295 SHEET 1 AA3 3 MET A 128 THR A 129 0 SHEET 2 AA3 3 VAL A 265 LEU A 269 -1 O LEU A 269 N MET A 128 SHEET 3 AA3 3 PHE A 255 PRO A 258 -1 N ILE A 257 O THR A 266 SHEET 1 AA4 2 ARG A 335 GLY A 341 0 SHEET 2 AA4 2 SER A 364 HIS A 370 -1 O LEU A 369 N VAL A 336 CISPEP 1 GLU A 373 PRO A 374 0 -1.81 SITE 1 AC1 17 ARG A 74 GLU A 102 GLU A 103 PHE A 105 SITE 2 AC1 17 ARG A 253 ASP A 274 MET A 275 ASN A 277 SITE 3 AC1 17 HIS A 278 TYR A 312 SER A 324 PHE A 326 SITE 4 AC1 17 EDO A 602 HOH A 763 HOH A 797 HOH A 811 SITE 5 AC1 17 LYS Y 73 SITE 1 AC2 3 GLU A 181 TYR A 182 SAH A 601 SITE 1 AC3 5 ILE A 24 GLN A 63 TYR A 220 SER A 237 SITE 2 AC3 5 PHE A 238 SITE 1 AC4 3 ASP A 334 GLU A 472 ILE A 473 SITE 1 AC5 5 PHE A 70 ARG A 164 ILE A 175 LEU A 178 SITE 2 AC5 5 SER A 180 SITE 1 AC6 2 ASP A 80 LYS A 83 CRYST1 60.654 116.752 174.377 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016487 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008565 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005735 0.00000