HEADER TRANSFERASE 05-DEC-19 6V6L TITLE CO-STRUCTURE OF HUMAN GLYCOGEN SYNTHASE KINASE BETA WITH 1-(6-((2-((6- TITLE 2 AMINO-5-NITROPYRIDIN-2-YL)AMINO)ETHYL)AMINO)-2-(2,4-DICHLOROPHENYL) TITLE 3 PYRIDIN-3-YL)-4-METHYLPIPERAZIN-2-ONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOGEN SYNTHASE KINASE-3 BETA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GSK-3 BETA,SERINE/THREONINE-PROTEIN KINASE GSK3B; COMPND 5 EC: 2.7.11.26,2.7.11.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GSK3B; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.E.BUSSIERE,E.FANG,W.SHU REVDAT 6 15-NOV-23 6V6L 1 REMARK REVDAT 5 11-OCT-23 6V6L 1 REMARK REVDAT 4 29-JUN-22 6V6L 1 COMPND FORMUL REVDAT 3 05-FEB-20 6V6L 1 JRNL REVDAT 2 29-JAN-20 6V6L 1 JRNL REVDAT 1 15-JAN-20 6V6L 0 JRNL AUTH S.RAMURTHY,K.B.PFISTER,R.S.BOYCE,S.P.BROWN,A.Q.COSTALES, JRNL AUTH 2 M.C.DESAI,E.FANG,B.H.LEVINE,S.C.NG,J.M.NUSS,D.B.RING, JRNL AUTH 3 C.M.SHAFER,W.SHU,S.SUBRAMANIAN,A.S.WAGMAN,H.WANG, JRNL AUTH 4 D.E.BUSSIERE JRNL TITL DISCOVERY AND OPTIMIZATION OF NOVEL PYRIDINES AS HIGHLY JRNL TITL 2 POTENT AND SELECTIVE GLYCOGEN SYNTHASE KINASE 3 INHIBITORS. JRNL REF BIOORG.MED.CHEM.LETT. V. 30 26930 2020 JRNL REFN ESSN 1464-3405 JRNL PMID 31926786 JRNL DOI 10.1016/J.BMCL.2019.126930 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 20146 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1015 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.20 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.20 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 403 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2313 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 379 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE : 0.2187 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.96 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 24 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2683 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 423 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03520 REMARK 3 B22 (A**2) : -3.35060 REMARK 3 B33 (A**2) : 3.38580 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -4.67230 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.300 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.351 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.215 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5394 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 9726 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1149 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 837 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5394 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 368 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 1 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6157 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.04 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.58 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.03 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|37 - A|67 } REMARK 3 ORIGIN FOR THE GROUP (A): 12.2541 -1.9476 -21.0330 REMARK 3 T TENSOR REMARK 3 T11: 0.0091 T22: 0.0194 REMARK 3 T33: 0.0150 T12: 0.0084 REMARK 3 T13: 0.0073 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.3263 L22: 0.1616 REMARK 3 L33: 0.3410 L12: -0.2632 REMARK 3 L13: 0.1264 L23: -0.0037 REMARK 3 S TENSOR REMARK 3 S11: -0.0000 S12: 0.0028 S13: -0.0035 REMARK 3 S21: -0.0020 S22: -0.0006 S23: -0.0030 REMARK 3 S31: 0.0067 S32: 0.0033 S33: 0.0007 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|68 - A|100 } REMARK 3 ORIGIN FOR THE GROUP (A): 7.9157 0.9062 -16.5484 REMARK 3 T TENSOR REMARK 3 T11: -0.0084 T22: 0.0086 REMARK 3 T33: 0.0066 T12: 0.0209 REMARK 3 T13: 0.0100 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.5242 L22: 0.2553 REMARK 3 L33: -0.0733 L12: -0.4323 REMARK 3 L13: -0.1582 L23: -0.2243 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: 0.0005 S13: -0.0025 REMARK 3 S21: -0.0026 S22: -0.0037 S23: -0.0013 REMARK 3 S31: -0.0023 S32: 0.0038 S33: 0.0018 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|101 - A|154 } REMARK 3 ORIGIN FOR THE GROUP (A): 1.3523 5.2384 -17.9573 REMARK 3 T TENSOR REMARK 3 T11: -0.0042 T22: 0.0024 REMARK 3 T33: 0.0115 T12: 0.0225 REMARK 3 T13: 0.0000 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 0.8969 L22: 0.0097 REMARK 3 L33: -0.0615 L12: -0.1119 REMARK 3 L13: -0.4256 L23: -0.5373 REMARK 3 S TENSOR REMARK 3 S11: 0.0031 S12: 0.0062 S13: -0.0037 REMARK 3 S21: 0.0016 S22: 0.0001 S23: -0.0008 REMARK 3 S31: -0.0018 S32: 0.0074 S33: -0.0032 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|155 - A|273 } REMARK 3 ORIGIN FOR THE GROUP (A): -11.2470 9.5168 -8.2644 REMARK 3 T TENSOR REMARK 3 T11: -0.0001 T22: 0.0001 REMARK 3 T33: -0.0058 T12: 0.0014 REMARK 3 T13: -0.0128 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.8617 L22: 0.2036 REMARK 3 L33: 0.5561 L12: -0.5103 REMARK 3 L13: -0.2252 L23: 0.3478 REMARK 3 S TENSOR REMARK 3 S11: -0.0007 S12: -0.0097 S13: 0.0069 REMARK 3 S21: 0.0151 S22: -0.0052 S23: -0.0088 REMARK 3 S31: 0.0068 S32: 0.0106 S33: 0.0060 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|274 - A|304 } REMARK 3 ORIGIN FOR THE GROUP (A): -22.2804 17.8725 5.2556 REMARK 3 T TENSOR REMARK 3 T11: 0.0133 T22: 0.0043 REMARK 3 T33: -0.0043 T12: -0.0049 REMARK 3 T13: 0.0006 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.1183 L22: 0.3841 REMARK 3 L33: 0.1167 L12: 0.0379 REMARK 3 L13: -0.1135 L23: 0.2968 REMARK 3 S TENSOR REMARK 3 S11: -0.0017 S12: -0.0089 S13: 0.0020 REMARK 3 S21: 0.0064 S22: 0.0005 S23: -0.0012 REMARK 3 S31: 0.0008 S32: 0.0018 S33: 0.0011 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { A|305 - A|344 } REMARK 3 ORIGIN FOR THE GROUP (A): -23.8538 11.2740 -13.1900 REMARK 3 T TENSOR REMARK 3 T11: 0.0152 T22: -0.0005 REMARK 3 T33: 0.0038 T12: 0.0069 REMARK 3 T13: -0.0033 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.2344 L22: 0.0710 REMARK 3 L33: 0.4236 L12: 0.0271 REMARK 3 L13: 0.0407 L23: 0.2590 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: 0.0109 S13: 0.0037 REMARK 3 S21: -0.0039 S22: -0.0037 S23: 0.0032 REMARK 3 S31: -0.0068 S32: -0.0066 S33: 0.0018 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { A|345 - A|384 } REMARK 3 ORIGIN FOR THE GROUP (A): -21.5953 -0.9010 -25.4750 REMARK 3 T TENSOR REMARK 3 T11: 0.0167 T22: 0.0017 REMARK 3 T33: 0.0023 T12: -0.0077 REMARK 3 T13: -0.0030 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.2087 L22: 0.2624 REMARK 3 L33: 0.3763 L12: 0.0333 REMARK 3 L13: 0.1122 L23: 0.1792 REMARK 3 S TENSOR REMARK 3 S11: -0.0009 S12: 0.0144 S13: -0.0016 REMARK 3 S21: -0.0066 S22: -0.0038 S23: 0.0024 REMARK 3 S31: 0.0025 S32: 0.0011 S33: 0.0048 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { A|501 - A|501 } REMARK 3 ORIGIN FOR THE GROUP (A): 2.4974 10.1677 -17.4046 REMARK 3 T TENSOR REMARK 3 T11: -0.0037 T22: -0.0029 REMARK 3 T33: -0.0004 T12: 0.0041 REMARK 3 T13: 0.0041 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.0023 L22: 0.0000 REMARK 3 L33: -0.0013 L12: -0.0078 REMARK 3 L13: -0.0035 L23: 0.0016 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: 0.0000 S13: 0.0003 REMARK 3 S21: 0.0005 S22: -0.0002 S23: -0.0002 REMARK 3 S31: -0.0004 S32: -0.0002 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: { A|502 - A|502 } REMARK 3 ORIGIN FOR THE GROUP (A): -2.8138 0.3042 3.3028 REMARK 3 T TENSOR REMARK 3 T11: 0.0006 T22: -0.0003 REMARK 3 T33: -0.0008 T12: -0.0000 REMARK 3 T13: -0.0008 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.0002 L22: 0.0000 REMARK 3 L33: -0.0001 L12: -0.0002 REMARK 3 L13: -0.0002 L23: -0.0003 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: -0.0000 S13: -0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: -0.0001 REMARK 3 S31: 0.0000 S32: 0.0001 S33: -0.0000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6V6L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1000245823. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 290 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20146 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 25.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.61400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 6B8J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7-12% (W:V) PEG 6000 AND 5-8% MPD REMARK 280 (V:V), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.38000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 ARG A 4 REMARK 465 PRO A 5 REMARK 465 ARG A 6 REMARK 465 THR A 7 REMARK 465 THR A 8 REMARK 465 SER A 9 REMARK 465 PHE A 10 REMARK 465 ALA A 11 REMARK 465 GLU A 12 REMARK 465 SER A 13 REMARK 465 CYS A 14 REMARK 465 LYS A 15 REMARK 465 PRO A 16 REMARK 465 VAL A 17 REMARK 465 GLN A 18 REMARK 465 GLN A 19 REMARK 465 PRO A 20 REMARK 465 SER A 21 REMARK 465 ALA A 22 REMARK 465 PHE A 23 REMARK 465 GLY A 24 REMARK 465 SER A 25 REMARK 465 MET A 26 REMARK 465 LYS A 27 REMARK 465 VAL A 28 REMARK 465 SER A 29 REMARK 465 ARG A 30 REMARK 465 ASP A 31 REMARK 465 LYS A 32 REMARK 465 ASP A 33 REMARK 465 GLY A 34 REMARK 465 SER A 35 REMARK 465 LYS A 36 REMARK 465 ARG A 92 REMARK 465 PHE A 93 REMARK 465 LYS A 94 REMARK 465 ASN A 95 REMARK 465 GLN A 385 REMARK 465 ALA A 386 REMARK 465 ALA A 387 REMARK 465 ALA A 388 REMARK 465 SER A 389 REMARK 465 THR A 390 REMARK 465 PRO A 391 REMARK 465 THR A 392 REMARK 465 ASN A 393 REMARK 465 ALA A 394 REMARK 465 THR A 395 REMARK 465 ALA A 396 REMARK 465 ALA A 397 REMARK 465 SER A 398 REMARK 465 ASP A 399 REMARK 465 ALA A 400 REMARK 465 ASN A 401 REMARK 465 THR A 402 REMARK 465 GLY A 403 REMARK 465 ASP A 404 REMARK 465 ARG A 405 REMARK 465 GLY A 406 REMARK 465 GLN A 407 REMARK 465 THR A 408 REMARK 465 ASN A 409 REMARK 465 ASN A 410 REMARK 465 ALA A 411 REMARK 465 ALA A 412 REMARK 465 SER A 413 REMARK 465 ALA A 414 REMARK 465 SER A 415 REMARK 465 ALA A 416 REMARK 465 SER A 417 REMARK 465 ASN A 418 REMARK 465 SER A 419 REMARK 465 THR A 420 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 46 CG CD OE1 NE2 REMARK 470 ASP A 49 CG OD1 OD2 REMARK 470 ARG A 50 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 60 CG CD CE NZ REMARK 470 LYS A 103 CG CD CE NZ REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 LYS A 150 CG CD CE NZ REMARK 470 ASP A 192 CG OD1 OD2 REMARK 470 ARG A 209 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 279 CG CD OE1 OE2 REMARK 470 ARG A 282 CG CD NE CZ NH1 NH2 REMARK 470 THR A 289 OG1 CG2 REMARK 470 GLU A 290 CG CD OE1 OE2 REMARK 470 LYS A 292 CG CD CE NZ REMARK 470 LYS A 297 CG CD CE NZ REMARK 470 ARG A 306 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 312 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 292 C - N - CA ANGL. DEV. = 19.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 50 87.58 -151.69 REMARK 500 ASP A 181 42.51 -157.56 REMARK 500 ASP A 200 83.41 59.40 REMARK 500 CYS A 218 149.11 77.54 REMARK 500 CYS A 218 149.16 77.33 REMARK 500 ASN A 370 78.10 -157.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 979 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 980 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 981 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 982 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A 983 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A 984 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A 985 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A 986 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A 987 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH A 988 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A 989 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A 990 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A 991 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH A 992 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH A 993 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH A 994 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH A 995 DISTANCE = 7.09 ANGSTROMS REMARK 525 HOH A 996 DISTANCE = 7.29 ANGSTROMS REMARK 525 HOH A 997 DISTANCE = 7.33 ANGSTROMS REMARK 525 HOH A 998 DISTANCE = 7.47 ANGSTROMS REMARK 525 HOH A 999 DISTANCE = 7.50 ANGSTROMS REMARK 525 HOH A1000 DISTANCE = 7.54 ANGSTROMS REMARK 525 HOH A1001 DISTANCE = 7.63 ANGSTROMS REMARK 525 HOH A1002 DISTANCE = 7.71 ANGSTROMS REMARK 525 HOH A1003 DISTANCE = 7.79 ANGSTROMS REMARK 525 HOH A1004 DISTANCE = 7.86 ANGSTROMS REMARK 525 HOH A1005 DISTANCE = 7.87 ANGSTROMS REMARK 525 HOH A1006 DISTANCE = 7.96 ANGSTROMS REMARK 525 HOH A1007 DISTANCE = 7.99 ANGSTROMS REMARK 525 HOH A1008 DISTANCE = 8.08 ANGSTROMS REMARK 525 HOH A1009 DISTANCE = 8.19 ANGSTROMS REMARK 525 HOH A1010 DISTANCE = 8.30 ANGSTROMS REMARK 525 HOH A1011 DISTANCE = 8.38 ANGSTROMS REMARK 525 HOH A1012 DISTANCE = 8.92 ANGSTROMS REMARK 525 HOH A1013 DISTANCE = 9.07 ANGSTROMS REMARK 525 HOH A1014 DISTANCE = 9.35 ANGSTROMS REMARK 525 HOH A1015 DISTANCE = 9.53 ANGSTROMS REMARK 525 HOH A1016 DISTANCE = 9.97 ANGSTROMS REMARK 525 HOH A1017 DISTANCE = 10.15 ANGSTROMS REMARK 525 HOH A1018 DISTANCE = 10.29 ANGSTROMS REMARK 525 HOH A1019 DISTANCE = 10.88 ANGSTROMS REMARK 525 HOH A1020 DISTANCE = 10.93 ANGSTROMS REMARK 525 HOH A1021 DISTANCE = 11.32 ANGSTROMS REMARK 525 HOH A1022 DISTANCE = 11.38 ANGSTROMS REMARK 525 HOH A1023 DISTANCE = 11.63 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QQA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 502 DBREF 6V6L A 1 420 UNP P49841 GSK3B_HUMAN 1 420 SEQRES 1 A 420 MET SER GLY ARG PRO ARG THR THR SER PHE ALA GLU SER SEQRES 2 A 420 CYS LYS PRO VAL GLN GLN PRO SER ALA PHE GLY SER MET SEQRES 3 A 420 LYS VAL SER ARG ASP LYS ASP GLY SER LYS VAL THR THR SEQRES 4 A 420 VAL VAL ALA THR PRO GLY GLN GLY PRO ASP ARG PRO GLN SEQRES 5 A 420 GLU VAL SER TYR THR ASP THR LYS VAL ILE GLY ASN GLY SEQRES 6 A 420 SER PHE GLY VAL VAL TYR GLN ALA LYS LEU CYS ASP SER SEQRES 7 A 420 GLY GLU LEU VAL ALA ILE LYS LYS VAL LEU GLN ASP LYS SEQRES 8 A 420 ARG PHE LYS ASN ARG GLU LEU GLN ILE MET ARG LYS LEU SEQRES 9 A 420 ASP HIS CYS ASN ILE VAL ARG LEU ARG TYR PHE PHE TYR SEQRES 10 A 420 SER SER GLY GLU LYS LYS ASP GLU VAL TYR LEU ASN LEU SEQRES 11 A 420 VAL LEU ASP TYR VAL PRO GLU THR VAL TYR ARG VAL ALA SEQRES 12 A 420 ARG HIS TYR SER ARG ALA LYS GLN THR LEU PRO VAL ILE SEQRES 13 A 420 TYR VAL LYS LEU TYR MET TYR GLN LEU PHE ARG SER LEU SEQRES 14 A 420 ALA TYR ILE HIS SER PHE GLY ILE CYS HIS ARG ASP ILE SEQRES 15 A 420 LYS PRO GLN ASN LEU LEU LEU ASP PRO ASP THR ALA VAL SEQRES 16 A 420 LEU LYS LEU CYS ASP PHE GLY SER ALA LYS GLN LEU VAL SEQRES 17 A 420 ARG GLY GLU PRO ASN VAL SER PTR ILE CYS SER ARG TYR SEQRES 18 A 420 TYR ARG ALA PRO GLU LEU ILE PHE GLY ALA THR ASP TYR SEQRES 19 A 420 THR SER SER ILE ASP VAL TRP SER ALA GLY CYS VAL LEU SEQRES 20 A 420 ALA GLU LEU LEU LEU GLY GLN PRO ILE PHE PRO GLY ASP SEQRES 21 A 420 SER GLY VAL ASP GLN LEU VAL GLU ILE ILE LYS VAL LEU SEQRES 22 A 420 GLY THR PRO THR ARG GLU GLN ILE ARG GLU MET ASN PRO SEQRES 23 A 420 ASN TYR THR GLU PHE LYS PHE PRO GLN ILE LYS ALA HIS SEQRES 24 A 420 PRO TRP THR LYS VAL PHE ARG PRO ARG THR PRO PRO GLU SEQRES 25 A 420 ALA ILE ALA LEU CYS SER ARG LEU LEU GLU TYR THR PRO SEQRES 26 A 420 THR ALA ARG LEU THR PRO LEU GLU ALA CYS ALA HIS SER SEQRES 27 A 420 PHE PHE ASP GLU LEU ARG ASP PRO ASN VAL LYS LEU PRO SEQRES 28 A 420 ASN GLY ARG ASP THR PRO ALA LEU PHE ASN PHE THR THR SEQRES 29 A 420 GLN GLU LEU SER SER ASN PRO PRO LEU ALA THR ILE LEU SEQRES 30 A 420 ILE PRO PRO HIS ALA ARG ILE GLN ALA ALA ALA SER THR SEQRES 31 A 420 PRO THR ASN ALA THR ALA ALA SER ASP ALA ASN THR GLY SEQRES 32 A 420 ASP ARG GLY GLN THR ASN ASN ALA ALA SER ALA SER ALA SEQRES 33 A 420 SER ASN SER THR MODRES 6V6L PTR A 216 TYR MODIFIED RESIDUE HET PTR A 216 16 HET QQA A 501 36 HET PO4 A 502 5 HETNAM PTR O-PHOSPHOTYROSINE HETNAM QQA 1-(6-((2-((6-AMINO-5-NITROPYRIDIN-2-YL)AMINO)ETHYL) HETNAM 2 QQA AMINO)-2-(2,4-DICHLOROPHENYL)PYRIDIN-3-YL)-4- HETNAM 3 QQA METHYLPIPERAZIN-2-ONE HETNAM PO4 PHOSPHATE ION HETSYN PTR PHOSPHONOTYROSINE FORMUL 1 PTR C9 H12 N O6 P FORMUL 2 QQA C23 H24 CL2 N8 O3 FORMUL 3 PO4 O4 P 3- FORMUL 4 HOH *423(H2 O) HELIX 1 AA1 GLU A 97 ARG A 102 1 6 HELIX 2 AA2 VAL A 139 ALA A 149 1 11 HELIX 3 AA3 PRO A 154 SER A 174 1 21 HELIX 4 AA4 LYS A 183 GLN A 185 5 3 HELIX 5 AA5 SER A 219 ARG A 223 5 5 HELIX 6 AA6 ALA A 224 PHE A 229 1 6 HELIX 7 AA7 SER A 236 GLY A 253 1 18 HELIX 8 AA8 SER A 261 GLY A 274 1 14 HELIX 9 AA9 THR A 277 ASN A 285 1 9 HELIX 10 AB1 PRO A 300 PHE A 305 1 6 HELIX 11 AB2 PRO A 310 ARG A 319 1 10 HELIX 12 AB3 THR A 324 ARG A 328 5 5 HELIX 13 AB4 THR A 330 ALA A 336 1 7 HELIX 14 AB5 HIS A 337 ASP A 345 5 9 HELIX 15 AB6 ASN A 370 PRO A 372 5 3 HELIX 16 AB7 LEU A 373 ILE A 378 1 6 SHEET 1 AA1 6 THR A 39 THR A 43 0 SHEET 2 AA1 6 GLN A 52 GLY A 65 -1 O VAL A 54 N VAL A 41 SHEET 3 AA1 6 GLY A 68 LEU A 75 -1 O GLN A 72 N LYS A 60 SHEET 4 AA1 6 LEU A 81 LEU A 88 -1 O ILE A 84 N TYR A 71 SHEET 5 AA1 6 TYR A 127 ASP A 133 -1 O LEU A 132 N ALA A 83 SHEET 6 AA1 6 LEU A 112 SER A 118 -1 N PHE A 116 O ASN A 129 SHEET 1 AA2 3 GLU A 137 THR A 138 0 SHEET 2 AA2 3 LEU A 187 ASP A 190 -1 O LEU A 189 N GLU A 137 SHEET 3 AA2 3 VAL A 195 LEU A 198 -1 O LYS A 197 N LEU A 188 SHEET 1 AA3 2 ILE A 177 CYS A 178 0 SHEET 2 AA3 2 LYS A 205 GLN A 206 -1 O LYS A 205 N CYS A 178 LINK C SER A 215 N PTR A 216 1555 1555 1.34 LINK C PTR A 216 N ILE A 217 1555 1555 1.33 SITE 1 AC1 17 ILE A 62 GLY A 63 ASN A 64 PHE A 67 SITE 2 AC1 17 ALA A 83 VAL A 110 LEU A 132 ASP A 133 SITE 3 AC1 17 TYR A 134 VAL A 135 PRO A 136 THR A 138 SITE 4 AC1 17 ARG A 141 GLN A 185 LEU A 188 HOH A 649 SITE 5 AC1 17 HOH A 683 SITE 1 AC2 5 ARG A 96 ARG A 180 LYS A 205 ASN A 213 SITE 2 AC2 5 VAL A 214 CRYST1 55.080 64.760 58.250 90.00 100.13 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018155 0.000000 0.003244 0.00000 SCALE2 0.000000 0.015442 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017439 0.00000