data_6V6R # _entry.id 6V6R # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6V6R pdb_00006v6r 10.2210/pdb6v6r/pdb WWPDB D_1000245852 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-12-09 2 'Structure model' 1 1 2021-02-24 3 'Structure model' 1 2 2021-03-10 4 'Structure model' 1 3 2024-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 3 'Structure model' '_citation.journal_volume' 11 3 'Structure model' '_citation.page_first' 12 3 'Structure model' '_citation.page_last' 13 4 'Structure model' '_database_2.pdbx_DOI' 14 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6V6R _pdbx_database_status.recvd_initial_deposition_date 2019-12-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 6U40 unspecified PDB . 6UEF unspecified PDB . 6UDN unspecified PDB . 6UAL unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Simmons, C.R.' 1 ? 'MacCulloch, T.' 2 ? 'Stephanopoulos, N.' 3 ? 'Yan, H.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 59 _citation.language ? _citation.page_first 18619 _citation.page_last 18626 _citation.title 'A Self-Assembled Rhombohedral DNA Crystal Scaffold with Tunable Cavity Sizes and High-Resolution Structural Detail.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.202005505 _citation.pdbx_database_id_PubMed 32533629 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Simmons, C.R.' 1 0000-0002-2290-6132 primary 'MacCulloch, T.' 2 0000-0001-5875-3361 primary 'Zhang, F.' 3 0000-0002-3177-7547 primary 'Liu, Y.' 4 ? primary 'Stephanopoulos, N.' 5 0000-0001-7859-410X primary 'Yan, H.' 6 0000-0001-7397-9852 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*AP*CP*TP*GP*AP*CP*TP*CP*AP*TP*GP*CP*TP*CP*AP*TP*CP*TP*GP*A)-3') ; 6358.123 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(P*AP*GP*CP*AP*TP*GP*A)-3') ; 2146.449 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*TP*GP*TP*CP*AP*GP*AP*TP*G)-3') ; 2770.834 1 ? ? ? ? 4 polymer syn ;DNA (5'-D(P*GP*TP*CP*AP*G)-3') ; 1520.036 1 ? ? ? ? 5 non-polymer syn 'CACODYLATE ION' 136.989 2 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no ;(DC)(DA)(DC)(DT)(DG)(DA)(DC)(DT)(DC)(DA)(DT)(DG)(DC)(DT)(DC)(DA)(DT)(DC)(DT)(DG) (DA) ; CACTGACTCATGCTCATCTGA B ? 2 polydeoxyribonucleotide no no '(DA)(DG)(DC)(DA)(DT)(DG)(DA)' AGCATGA A ? 3 polydeoxyribonucleotide no no '(DT)(DG)(DT)(DC)(DA)(DG)(DA)(DT)(DG)' TGTCAGATG C ? 4 polydeoxyribonucleotide no no '(DG)(DT)(DC)(DA)(DG)' GTCAG D ? # _pdbx_entity_nonpoly.entity_id 5 _pdbx_entity_nonpoly.name 'CACODYLATE ION' _pdbx_entity_nonpoly.comp_id CAC # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DA n 1 3 DC n 1 4 DT n 1 5 DG n 1 6 DA n 1 7 DC n 1 8 DT n 1 9 DC n 1 10 DA n 1 11 DT n 1 12 DG n 1 13 DC n 1 14 DT n 1 15 DC n 1 16 DA n 1 17 DT n 1 18 DC n 1 19 DT n 1 20 DG n 1 21 DA n 2 1 DA n 2 2 DG n 2 3 DC n 2 4 DA n 2 5 DT n 2 6 DG n 2 7 DA n 3 1 DT n 3 2 DG n 3 3 DT n 3 4 DC n 3 5 DA n 3 6 DG n 3 7 DA n 3 8 DT n 3 9 DG n 4 1 DG n 4 2 DT n 4 3 DC n 4 4 DA n 4 5 DG n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 21 'synthetic construct' ? 32630 ? 2 1 sample 1 7 'synthetic construct' ? 32630 ? 3 1 sample 1 9 'synthetic construct' ? 32630 ? 4 1 sample 1 5 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CAC non-polymer . 'CACODYLATE ION' dimethylarsinate 'C2 H6 As O2 -1' 136.989 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 5 5 DC DC B . n A 1 2 DA 2 6 6 DA DA B . n A 1 3 DC 3 7 7 DC DC B . n A 1 4 DT 4 8 8 DT DT B . n A 1 5 DG 5 9 9 DG DG B . n A 1 6 DA 6 10 10 DA DA B . n A 1 7 DC 7 11 11 DC DC B . n A 1 8 DT 8 12 12 DT DT B . n A 1 9 DC 9 13 13 DC DC B . n A 1 10 DA 10 14 14 DA DA B . n A 1 11 DT 11 15 15 DT DT B . n A 1 12 DG 12 16 16 DG DG B . n A 1 13 DC 13 17 17 DC DC B . n A 1 14 DT 14 18 18 DT DT B . n A 1 15 DC 15 19 19 DC DC B . n A 1 16 DA 16 20 20 DA DA B . n A 1 17 DT 17 21 21 DT DT B . n A 1 18 DC 18 22 22 DC DC B . n A 1 19 DT 19 23 23 DT DT B . n A 1 20 DG 20 24 24 DG DG B . n A 1 21 DA 21 25 25 DA DA B . n B 2 1 DA 1 65 65 DA DA A . n B 2 2 DG 2 66 66 DG DG A . n B 2 3 DC 3 67 67 DC DC A . n B 2 4 DA 4 68 68 DA DA A . n B 2 5 DT 5 69 69 DT DT A . n B 2 6 DG 6 70 70 DG DG A . n B 2 7 DA 7 71 71 DA DA A . n C 3 1 DT 1 56 56 DT DT C . n C 3 2 DG 2 57 57 DG DG C . n C 3 3 DT 3 58 58 DT DT C . n C 3 4 DC 4 59 59 DC DC C . n C 3 5 DA 5 60 60 DA DA C . n C 3 6 DG 6 61 61 DG DG C . n C 3 7 DA 7 62 62 DA DA C . n C 3 8 DT 8 63 63 DT DT C . n C 3 9 DG 9 64 64 DG DG C . n D 4 1 DG 1 72 72 DG DG D . n D 4 2 DT 2 73 73 DT DT D . n D 4 3 DC 3 74 74 DC DC D . n D 4 4 DA 4 75 75 DA DA D . n D 4 5 DG 5 76 76 DG DG D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 CAC 1 101 4 CAC AS A . F 5 CAC 1 101 3 CAC AS D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A CAC 101 ? O1 ? E CAC 1 O1 2 1 N 1 A CAC 101 ? O2 ? E CAC 1 O2 3 1 N 1 A CAC 101 ? C1 ? E CAC 1 C1 4 1 N 1 A CAC 101 ? C2 ? E CAC 1 C2 5 1 N 1 D CAC 101 ? O1 ? F CAC 1 O1 6 1 N 1 D CAC 101 ? O2 ? F CAC 1 O2 7 1 N 1 D CAC 101 ? C1 ? F CAC 1 C1 8 1 N 1 D CAC 101 ? C2 ? F CAC 1 C2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.11.1_2575 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? HKL2Map ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6V6R _cell.details ? _cell.formula_units_Z ? _cell.length_a 115.806 _cell.length_a_esd ? _cell.length_b 115.806 _cell.length_b_esd ? _cell.length_c 44.748 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 9 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V6R _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6V6R _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 4.51 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 72.75 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details 'temperature gradient generated from 60 to 25 C at 0.3 degrees per hour' _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;Crystallization conditions: 0.5 mL of 50 mM cacodylate pH 6.5 with 100 mM MgCl2, 1 mM cobalt hexamine, and 10% Ethanol was added to the reservoir with 2 uL added to the drop containing 4 uL of DNA stock. ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-08-15 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.92 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.92 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate 83.160 _reflns.entry_id 6V6R _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.700 _reflns.d_resolution_low 50.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 12116 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.500 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 2.400 _reflns.pdbx_Rmerge_I_obs 0.062 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 18.100 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 4.404 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.079 _reflns.pdbx_Rpim_I_all 0.049 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.93 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 2.700 2.750 ? ? ? ? ? ? 555 92.500 ? ? ? ? 0.637 ? ? ? ? ? ? ? ? 1.900 ? 0.547 ? ? 0.833 0.530 ? 1 1 0.621 ? ? 2.750 2.800 ? ? ? ? ? ? 578 95.700 ? ? ? ? 0.383 ? ? ? ? ? ? ? ? 2.100 ? 0.578 ? ? 0.495 0.310 ? 2 1 0.788 ? ? 2.800 2.850 ? ? ? ? ? ? 605 96.000 ? ? ? ? 0.390 ? ? ? ? ? ? ? ? 2.100 ? 0.635 ? ? 0.504 0.316 ? 3 1 0.752 ? ? 2.850 2.910 ? ? ? ? ? ? 603 98.500 ? ? ? ? 0.276 ? ? ? ? ? ? ? ? 2.400 ? 0.552 ? ? 0.351 0.215 ? 4 1 0.876 ? ? 2.910 2.970 ? ? ? ? ? ? 623 98.900 ? ? ? ? 0.189 ? ? ? ? ? ? ? ? 2.500 ? 0.845 ? ? 0.239 0.145 ? 5 1 0.915 ? ? 2.970 3.040 ? ? ? ? ? ? 633 99.500 ? ? ? ? 0.154 ? ? ? ? ? ? ? ? 2.500 ? 0.983 ? ? 0.195 0.118 ? 6 1 0.975 ? ? 3.040 3.120 ? ? ? ? ? ? 590 99.700 ? ? ? ? 0.116 ? ? ? ? ? ? ? ? 2.500 ? 2.087 ? ? 0.147 0.090 ? 7 1 0.875 ? ? 3.120 3.200 ? ? ? ? ? ? 618 99.000 ? ? ? ? 0.086 ? ? ? ? ? ? ? ? 2.400 ? 2.445 ? ? 0.110 0.067 ? 8 1 0.989 ? ? 3.200 3.300 ? ? ? ? ? ? 566 98.300 ? ? ? ? 0.074 ? ? ? ? ? ? ? ? 2.500 ? 3.674 ? ? 0.092 0.055 ? 9 1 0.987 ? ? 3.300 3.400 ? ? ? ? ? ? 624 98.100 ? ? ? ? 0.112 ? ? ? ? ? ? ? ? 2.400 ? 4.604 ? ? 0.150 0.099 ? 10 1 0.656 ? ? 3.400 3.520 ? ? ? ? ? ? 594 99.000 ? ? ? ? 0.063 ? ? ? ? ? ? ? ? 2.400 ? 4.400 ? ? 0.081 0.051 ? 11 1 0.994 ? ? 3.520 3.660 ? ? ? ? ? ? 624 99.400 ? ? ? ? 0.081 ? ? ? ? ? ? ? ? 2.600 ? 5.728 ? ? 0.102 0.061 ? 12 1 0.988 ? ? 3.660 3.830 ? ? ? ? ? ? 609 99.800 ? ? ? ? 0.086 ? ? ? ? ? ? ? ? 2.600 ? 6.178 ? ? 0.107 0.064 ? 13 1 0.982 ? ? 3.830 4.030 ? ? ? ? ? ? 654 100.000 ? ? ? ? 0.065 ? ? ? ? ? ? ? ? 2.600 ? 5.431 ? ? 0.082 0.049 ? 14 1 0.988 ? ? 4.030 4.290 ? ? ? ? ? ? 612 100.000 ? ? ? ? 0.056 ? ? ? ? ? ? ? ? 2.500 ? 4.568 ? ? 0.071 0.043 ? 15 1 0.988 ? ? 4.290 4.620 ? ? ? ? ? ? 580 99.000 ? ? ? ? 0.062 ? ? ? ? ? ? ? ? 2.400 ? 6.832 ? ? 0.079 0.048 ? 16 1 0.988 ? ? 4.620 5.080 ? ? ? ? ? ? 609 99.800 ? ? ? ? 0.056 ? ? ? ? ? ? ? ? 2.600 ? 6.382 ? ? 0.070 0.042 ? 17 1 0.991 ? ? 5.080 5.810 ? ? ? ? ? ? 608 99.700 ? ? ? ? 0.055 ? ? ? ? ? ? ? ? 2.600 ? 7.914 ? ? 0.070 0.042 ? 18 1 0.991 ? ? 5.810 7.320 ? ? ? ? ? ? 637 99.200 ? ? ? ? 0.051 ? ? ? ? ? ? ? ? 2.400 ? 10.027 ? ? 0.065 0.040 ? 19 1 0.992 ? ? 7.320 50.000 ? ? ? ? ? ? 594 98.000 ? ? ? ? 0.049 ? ? ? ? ? ? ? ? 2.500 ? 8.554 ? ? 0.063 0.039 ? 20 1 0.992 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 182.540 _refine.B_iso_mean 109.8962 _refine.B_iso_min 52.240 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6V6R _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.7000 _refine.ls_d_res_low 40.8650 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 12050 _refine.ls_number_reflns_R_free 602 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.9800 _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2435 _refine.ls_R_factor_R_free 0.2786 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2416 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.960 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 42.0200 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.4600 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.7000 _refine_hist.d_res_low 40.8650 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 857 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 42 _refine_hist.pdbx_B_iso_mean_ligand 172.38 _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 855 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.005 ? 956 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.753 ? 1467 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.040 ? 166 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.004 ? 42 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 35.496 ? 406 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.7 2.9716 . . 152 2800 96.0000 . . . 0.4594 0.0000 0.4255 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9716 3.4014 . . 140 2814 97.0000 . . . 0.2915 0.0000 0.2577 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.4014 4.2846 . . 148 2943 100.0000 . . . 0.3327 0.0000 0.2807 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.2846 40.8650 . . 162 2891 100.0000 . . . 0.2386 0.0000 0.2039 . . . . . . . . . . . # _struct.entry_id 6V6R _struct.title 'Crystal Structure of a Bromine Derivatized Self-Assembling DNA Crystal Scaffold with Rhombohedral Symmetry.' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6V6R _struct_keywords.text 'Self-Assembly, DNA Nanotechnology, DNA Scaffold, Crystal Lattice, DNA, Bromine, SAD, Bromo-dU' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 6V6R 6V6R ? 1 ? 1 2 PDB 6V6R 6V6R ? 2 ? 1 3 PDB 6V6R 6V6R ? 3 ? 1 4 PDB 6V6R 6V6R ? 4 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6V6R B 1 ? 21 ? 6V6R 5 ? 25 ? 5 25 2 2 6V6R A 1 ? 7 ? 6V6R 65 ? 71 ? 65 71 3 3 6V6R C 1 ? 9 ? 6V6R 56 ? 64 ? 56 64 4 4 6V6R D 1 ? 5 ? 6V6R 72 ? 76 ? 72 76 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 3 N3 ? ? ? 1_555 D DG 5 N2 ? ? B DC 7 D DG 76 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog2 hydrog ? ? A DT 4 N3 ? ? ? 1_555 D DA 4 N1 ? ? B DT 8 D DA 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DT 4 O4 ? ? ? 1_555 D DA 4 N6 ? ? B DT 8 D DA 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 5 N1 ? ? ? 1_555 D DC 3 N3 ? ? B DG 9 D DC 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 5 N2 ? ? ? 1_555 D DC 3 O2 ? ? B DG 9 D DC 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 5 O6 ? ? ? 1_555 D DC 3 N4 ? ? B DG 9 D DC 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 6 N1 ? ? ? 1_555 D DT 2 N3 ? ? B DA 10 D DT 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 6 N6 ? ? ? 1_555 D DT 2 O4 ? ? B DA 10 D DT 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 7 N3 ? ? ? 1_555 D DG 1 N1 ? ? B DC 11 D DG 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 7 N4 ? ? ? 1_555 D DG 1 O6 ? ? B DC 11 D DG 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 7 O2 ? ? ? 1_555 D DG 1 N2 ? ? B DC 11 D DG 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 7 N1 ? ? B DT 12 A DA 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 7 N6 ? ? B DT 12 A DA 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 6 N1 ? ? B DC 13 A DG 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 6 O6 ? ? B DC 13 A DG 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 6 N2 ? ? B DC 13 A DG 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 5 N3 ? ? B DA 14 A DT 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 5 O4 ? ? B DA 14 A DT 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 4 N1 ? ? B DT 15 A DA 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 4 N6 ? ? B DT 15 A DA 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 3 N3 ? ? B DG 16 A DC 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 3 O2 ? ? B DG 16 A DC 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 3 N4 ? ? B DG 16 A DC 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 13 N3 ? ? ? 1_555 B DG 2 N1 ? ? B DC 17 A DG 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 13 N4 ? ? ? 1_555 B DG 2 O6 ? ? B DC 17 A DG 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 13 O2 ? ? ? 1_555 B DG 2 N2 ? ? B DC 17 A DG 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 1 N1 ? ? B DT 18 A DA 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 1 N6 ? ? B DT 18 A DA 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 15 N3 ? ? ? 1_555 C DG 9 N1 ? ? B DC 19 C DG 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 15 N4 ? ? ? 1_555 C DG 9 O6 ? ? B DC 19 C DG 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 15 O2 ? ? ? 1_555 C DG 9 N2 ? ? B DC 19 C DG 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DA 16 N1 ? ? ? 1_555 C DT 8 N3 ? ? B DA 20 C DT 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DA 16 N6 ? ? ? 1_555 C DT 8 O4 ? ? B DA 20 C DT 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DT 17 N3 ? ? ? 1_555 C DA 7 N1 ? ? B DT 21 C DA 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DT 17 O4 ? ? ? 1_555 C DA 7 N6 ? ? B DT 21 C DA 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DC 18 N3 ? ? ? 1_555 C DG 6 N1 ? ? B DC 22 C DG 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DC 18 N4 ? ? ? 1_555 C DG 6 O6 ? ? B DC 22 C DG 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DC 18 O2 ? ? ? 1_555 C DG 6 N2 ? ? B DC 22 C DG 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DT 19 N3 ? ? ? 1_555 C DA 5 N1 ? ? B DT 23 C DA 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DT 19 O4 ? ? ? 1_555 C DA 5 N6 ? ? B DT 23 C DA 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DG 20 N1 ? ? ? 1_555 C DC 4 N3 ? ? B DG 24 C DC 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DG 20 N2 ? ? ? 1_555 C DC 4 O2 ? ? B DG 24 C DC 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DG 20 O6 ? ? ? 1_555 C DC 4 N4 ? ? B DG 24 C DC 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DA 21 N1 ? ? ? 1_555 C DT 3 N3 ? ? B DA 25 C DT 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DA 21 N6 ? ? ? 1_555 C DT 3 O4 ? ? B DA 25 C DT 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id D _struct_site.pdbx_auth_comp_id CAC _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 1 _struct_site.details 'binding site for residue CAC D 101' # _struct_site_gen.id 1 _struct_site_gen.site_id AC1 _struct_site_gen.pdbx_num_res 1 _struct_site_gen.label_comp_id DG _struct_site_gen.label_asym_id C _struct_site_gen.label_seq_id 9 _struct_site_gen.pdbx_auth_ins_code ? _struct_site_gen.auth_comp_id DG _struct_site_gen.auth_asym_id C _struct_site_gen.auth_seq_id 64 _struct_site_gen.label_atom_id . _struct_site_gen.label_alt_id ? _struct_site_gen.symmetry 8_754 _struct_site_gen.details ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 C _pdbx_validate_rmsd_angle.auth_comp_id_1 DG _pdbx_validate_rmsd_angle.auth_seq_id_1 64 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 C _pdbx_validate_rmsd_angle.auth_comp_id_2 DG _pdbx_validate_rmsd_angle.auth_seq_id_2 64 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N9 _pdbx_validate_rmsd_angle.auth_asym_id_3 C _pdbx_validate_rmsd_angle.auth_comp_id_3 DG _pdbx_validate_rmsd_angle.auth_seq_id_3 64 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 110.55 _pdbx_validate_rmsd_angle.angle_target_value 108.30 _pdbx_validate_rmsd_angle.angle_deviation 2.25 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.30 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_entry_details.entry_id 6V6R _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CAC AS AS N N 1 CAC O1 O N N 2 CAC O2 O N N 3 CAC C1 C N N 4 CAC C2 C N N 5 CAC H11 H N N 6 CAC H12 H N N 7 CAC H13 H N N 8 CAC H21 H N N 9 CAC H22 H N N 10 CAC H23 H N N 11 DA OP3 O N N 12 DA P P N N 13 DA OP1 O N N 14 DA OP2 O N N 15 DA "O5'" O N N 16 DA "C5'" C N N 17 DA "C4'" C N R 18 DA "O4'" O N N 19 DA "C3'" C N S 20 DA "O3'" O N N 21 DA "C2'" C N N 22 DA "C1'" C N R 23 DA N9 N Y N 24 DA C8 C Y N 25 DA N7 N Y N 26 DA C5 C Y N 27 DA C6 C Y N 28 DA N6 N N N 29 DA N1 N Y N 30 DA C2 C Y N 31 DA N3 N Y N 32 DA C4 C Y N 33 DA HOP3 H N N 34 DA HOP2 H N N 35 DA "H5'" H N N 36 DA "H5''" H N N 37 DA "H4'" H N N 38 DA "H3'" H N N 39 DA "HO3'" H N N 40 DA "H2'" H N N 41 DA "H2''" H N N 42 DA "H1'" H N N 43 DA H8 H N N 44 DA H61 H N N 45 DA H62 H N N 46 DA H2 H N N 47 DC OP3 O N N 48 DC P P N N 49 DC OP1 O N N 50 DC OP2 O N N 51 DC "O5'" O N N 52 DC "C5'" C N N 53 DC "C4'" C N R 54 DC "O4'" O N N 55 DC "C3'" C N S 56 DC "O3'" O N N 57 DC "C2'" C N N 58 DC "C1'" C N R 59 DC N1 N N N 60 DC C2 C N N 61 DC O2 O N N 62 DC N3 N N N 63 DC C4 C N N 64 DC N4 N N N 65 DC C5 C N N 66 DC C6 C N N 67 DC HOP3 H N N 68 DC HOP2 H N N 69 DC "H5'" H N N 70 DC "H5''" H N N 71 DC "H4'" H N N 72 DC "H3'" H N N 73 DC "HO3'" H N N 74 DC "H2'" H N N 75 DC "H2''" H N N 76 DC "H1'" H N N 77 DC H41 H N N 78 DC H42 H N N 79 DC H5 H N N 80 DC H6 H N N 81 DG OP3 O N N 82 DG P P N N 83 DG OP1 O N N 84 DG OP2 O N N 85 DG "O5'" O N N 86 DG "C5'" C N N 87 DG "C4'" C N R 88 DG "O4'" O N N 89 DG "C3'" C N S 90 DG "O3'" O N N 91 DG "C2'" C N N 92 DG "C1'" C N R 93 DG N9 N Y N 94 DG C8 C Y N 95 DG N7 N Y N 96 DG C5 C Y N 97 DG C6 C N N 98 DG O6 O N N 99 DG N1 N N N 100 DG C2 C N N 101 DG N2 N N N 102 DG N3 N N N 103 DG C4 C Y N 104 DG HOP3 H N N 105 DG HOP2 H N N 106 DG "H5'" H N N 107 DG "H5''" H N N 108 DG "H4'" H N N 109 DG "H3'" H N N 110 DG "HO3'" H N N 111 DG "H2'" H N N 112 DG "H2''" H N N 113 DG "H1'" H N N 114 DG H8 H N N 115 DG H1 H N N 116 DG H21 H N N 117 DG H22 H N N 118 DT OP3 O N N 119 DT P P N N 120 DT OP1 O N N 121 DT OP2 O N N 122 DT "O5'" O N N 123 DT "C5'" C N N 124 DT "C4'" C N R 125 DT "O4'" O N N 126 DT "C3'" C N S 127 DT "O3'" O N N 128 DT "C2'" C N N 129 DT "C1'" C N R 130 DT N1 N N N 131 DT C2 C N N 132 DT O2 O N N 133 DT N3 N N N 134 DT C4 C N N 135 DT O4 O N N 136 DT C5 C N N 137 DT C7 C N N 138 DT C6 C N N 139 DT HOP3 H N N 140 DT HOP2 H N N 141 DT "H5'" H N N 142 DT "H5''" H N N 143 DT "H4'" H N N 144 DT "H3'" H N N 145 DT "HO3'" H N N 146 DT "H2'" H N N 147 DT "H2''" H N N 148 DT "H1'" H N N 149 DT H3 H N N 150 DT H71 H N N 151 DT H72 H N N 152 DT H73 H N N 153 DT H6 H N N 154 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CAC AS O1 doub N N 1 CAC AS O2 sing N N 2 CAC AS C1 sing N N 3 CAC AS C2 sing N N 4 CAC C1 H11 sing N N 5 CAC C1 H12 sing N N 6 CAC C1 H13 sing N N 7 CAC C2 H21 sing N N 8 CAC C2 H22 sing N N 9 CAC C2 H23 sing N N 10 DA OP3 P sing N N 11 DA OP3 HOP3 sing N N 12 DA P OP1 doub N N 13 DA P OP2 sing N N 14 DA P "O5'" sing N N 15 DA OP2 HOP2 sing N N 16 DA "O5'" "C5'" sing N N 17 DA "C5'" "C4'" sing N N 18 DA "C5'" "H5'" sing N N 19 DA "C5'" "H5''" sing N N 20 DA "C4'" "O4'" sing N N 21 DA "C4'" "C3'" sing N N 22 DA "C4'" "H4'" sing N N 23 DA "O4'" "C1'" sing N N 24 DA "C3'" "O3'" sing N N 25 DA "C3'" "C2'" sing N N 26 DA "C3'" "H3'" sing N N 27 DA "O3'" "HO3'" sing N N 28 DA "C2'" "C1'" sing N N 29 DA "C2'" "H2'" sing N N 30 DA "C2'" "H2''" sing N N 31 DA "C1'" N9 sing N N 32 DA "C1'" "H1'" sing N N 33 DA N9 C8 sing Y N 34 DA N9 C4 sing Y N 35 DA C8 N7 doub Y N 36 DA C8 H8 sing N N 37 DA N7 C5 sing Y N 38 DA C5 C6 sing Y N 39 DA C5 C4 doub Y N 40 DA C6 N6 sing N N 41 DA C6 N1 doub Y N 42 DA N6 H61 sing N N 43 DA N6 H62 sing N N 44 DA N1 C2 sing Y N 45 DA C2 N3 doub Y N 46 DA C2 H2 sing N N 47 DA N3 C4 sing Y N 48 DC OP3 P sing N N 49 DC OP3 HOP3 sing N N 50 DC P OP1 doub N N 51 DC P OP2 sing N N 52 DC P "O5'" sing N N 53 DC OP2 HOP2 sing N N 54 DC "O5'" "C5'" sing N N 55 DC "C5'" "C4'" sing N N 56 DC "C5'" "H5'" sing N N 57 DC "C5'" "H5''" sing N N 58 DC "C4'" "O4'" sing N N 59 DC "C4'" "C3'" sing N N 60 DC "C4'" "H4'" sing N N 61 DC "O4'" "C1'" sing N N 62 DC "C3'" "O3'" sing N N 63 DC "C3'" "C2'" sing N N 64 DC "C3'" "H3'" sing N N 65 DC "O3'" "HO3'" sing N N 66 DC "C2'" "C1'" sing N N 67 DC "C2'" "H2'" sing N N 68 DC "C2'" "H2''" sing N N 69 DC "C1'" N1 sing N N 70 DC "C1'" "H1'" sing N N 71 DC N1 C2 sing N N 72 DC N1 C6 sing N N 73 DC C2 O2 doub N N 74 DC C2 N3 sing N N 75 DC N3 C4 doub N N 76 DC C4 N4 sing N N 77 DC C4 C5 sing N N 78 DC N4 H41 sing N N 79 DC N4 H42 sing N N 80 DC C5 C6 doub N N 81 DC C5 H5 sing N N 82 DC C6 H6 sing N N 83 DG OP3 P sing N N 84 DG OP3 HOP3 sing N N 85 DG P OP1 doub N N 86 DG P OP2 sing N N 87 DG P "O5'" sing N N 88 DG OP2 HOP2 sing N N 89 DG "O5'" "C5'" sing N N 90 DG "C5'" "C4'" sing N N 91 DG "C5'" "H5'" sing N N 92 DG "C5'" "H5''" sing N N 93 DG "C4'" "O4'" sing N N 94 DG "C4'" "C3'" sing N N 95 DG "C4'" "H4'" sing N N 96 DG "O4'" "C1'" sing N N 97 DG "C3'" "O3'" sing N N 98 DG "C3'" "C2'" sing N N 99 DG "C3'" "H3'" sing N N 100 DG "O3'" "HO3'" sing N N 101 DG "C2'" "C1'" sing N N 102 DG "C2'" "H2'" sing N N 103 DG "C2'" "H2''" sing N N 104 DG "C1'" N9 sing N N 105 DG "C1'" "H1'" sing N N 106 DG N9 C8 sing Y N 107 DG N9 C4 sing Y N 108 DG C8 N7 doub Y N 109 DG C8 H8 sing N N 110 DG N7 C5 sing Y N 111 DG C5 C6 sing N N 112 DG C5 C4 doub Y N 113 DG C6 O6 doub N N 114 DG C6 N1 sing N N 115 DG N1 C2 sing N N 116 DG N1 H1 sing N N 117 DG C2 N2 sing N N 118 DG C2 N3 doub N N 119 DG N2 H21 sing N N 120 DG N2 H22 sing N N 121 DG N3 C4 sing N N 122 DT OP3 P sing N N 123 DT OP3 HOP3 sing N N 124 DT P OP1 doub N N 125 DT P OP2 sing N N 126 DT P "O5'" sing N N 127 DT OP2 HOP2 sing N N 128 DT "O5'" "C5'" sing N N 129 DT "C5'" "C4'" sing N N 130 DT "C5'" "H5'" sing N N 131 DT "C5'" "H5''" sing N N 132 DT "C4'" "O4'" sing N N 133 DT "C4'" "C3'" sing N N 134 DT "C4'" "H4'" sing N N 135 DT "O4'" "C1'" sing N N 136 DT "C3'" "O3'" sing N N 137 DT "C3'" "C2'" sing N N 138 DT "C3'" "H3'" sing N N 139 DT "O3'" "HO3'" sing N N 140 DT "C2'" "C1'" sing N N 141 DT "C2'" "H2'" sing N N 142 DT "C2'" "H2''" sing N N 143 DT "C1'" N1 sing N N 144 DT "C1'" "H1'" sing N N 145 DT N1 C2 sing N N 146 DT N1 C6 sing N N 147 DT C2 O2 doub N N 148 DT C2 N3 sing N N 149 DT N3 C4 sing N N 150 DT N3 H3 sing N N 151 DT C4 O4 doub N N 152 DT C4 C5 sing N N 153 DT C5 C7 sing N N 154 DT C5 C6 doub N N 155 DT C7 H71 sing N N 156 DT C7 H72 sing N N 157 DT C7 H73 sing N N 158 DT C6 H6 sing N N 159 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6V6R 'double helix' 6V6R 'a-form double helix' 6V6R 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 3 1_555 D DG 5 1_555 -1.046 0.714 0.116 12.580 -11.807 1.875 1 B_DC7:DG76_D B 7 ? D 76 ? ? 1 1 A DT 4 1_555 D DA 4 1_555 -0.484 -0.127 0.044 7.367 -15.866 1.639 2 B_DT8:DA75_D B 8 ? D 75 ? 20 1 1 A DG 5 1_555 D DC 3 1_555 0.066 -0.301 -0.281 -1.085 -15.678 -0.240 3 B_DG9:DC74_D B 9 ? D 74 ? 19 1 1 A DA 6 1_555 D DT 2 1_555 0.114 -0.324 -0.373 -4.175 -16.004 -4.743 4 B_DA10:DT73_D B 10 ? D 73 ? 20 1 1 A DC 7 1_555 D DG 1 1_555 -0.019 -0.151 0.483 -6.551 -14.569 -0.945 5 B_DC11:DG72_D B 11 ? D 72 ? 19 1 1 A DT 8 1_555 B DA 7 1_555 -1.480 -0.072 0.406 -7.844 -4.157 -2.322 6 B_DT12:DA71_A B 12 ? A 71 ? 20 1 1 A DC 9 1_555 B DG 6 1_555 -0.204 -0.173 0.489 -1.708 -2.661 -2.189 7 B_DC13:DG70_A B 13 ? A 70 ? 19 1 1 A DA 10 1_555 B DT 5 1_555 1.020 -0.112 0.600 0.845 -2.831 -0.614 8 B_DA14:DT69_A B 14 ? A 69 ? 20 1 1 A DT 11 1_555 B DA 4 1_555 -0.911 -0.242 0.358 1.694 1.020 -4.892 9 B_DT15:DA68_A B 15 ? A 68 ? 20 1 1 A DG 12 1_555 B DC 3 1_555 0.181 -0.322 0.274 3.435 -2.159 -2.316 10 B_DG16:DC67_A B 16 ? A 67 ? 19 1 1 A DC 13 1_555 B DG 2 1_555 0.243 -0.451 0.320 -1.615 -4.074 -3.792 11 B_DC17:DG66_A B 17 ? A 66 ? 19 1 1 A DT 14 1_555 B DA 1 1_555 -0.332 -0.113 0.433 0.687 -2.983 -11.726 12 B_DT18:DA65_A B 18 ? A 65 ? 20 1 1 A DC 15 1_555 C DG 9 1_555 0.202 -0.117 0.242 -0.397 4.173 2.888 13 B_DC19:DG64_C B 19 ? C 64 ? 19 1 1 A DA 16 1_555 C DT 8 1_555 0.093 -0.318 0.838 3.502 -1.604 0.489 14 B_DA20:DT63_C B 20 ? C 63 ? 20 1 1 A DT 17 1_555 C DA 7 1_555 -0.147 -0.175 0.655 2.183 -2.247 -2.048 15 B_DT21:DA62_C B 21 ? C 62 ? 20 1 1 A DC 18 1_555 C DG 6 1_555 0.165 -0.184 0.372 1.625 -2.154 0.870 16 B_DC22:DG61_C B 22 ? C 61 ? 19 1 1 A DT 19 1_555 C DA 5 1_555 -0.032 -0.156 0.317 0.973 -4.536 0.760 17 B_DT23:DA60_C B 23 ? C 60 ? 20 1 1 A DG 20 1_555 C DC 4 1_555 -0.227 -0.163 -0.529 -8.987 -7.258 2.089 18 B_DG24:DC59_C B 24 ? C 59 ? 19 1 1 A DA 21 1_555 C DT 3 1_555 0.111 -0.130 -0.548 -5.755 -5.999 -0.973 19 B_DA25:DT58_C B 25 ? C 58 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 3 1_555 D DG 5 1_555 A DT 4 1_555 D DA 4 1_555 0.043 0.183 3.305 2.544 1.369 32.446 0.086 0.373 3.303 2.443 -4.542 32.571 1 BB_DC7DT8:DA75DG76_DD B 7 ? D 76 ? B 8 ? D 75 ? 1 A DT 4 1_555 D DA 4 1_555 A DG 5 1_555 D DC 3 1_555 -0.055 2.094 3.742 0.462 -0.377 42.806 2.912 0.128 3.724 -0.517 -0.633 42.810 2 BB_DT8DG9:DC74DA75_DD B 8 ? D 75 ? B 9 ? D 74 ? 1 A DG 5 1_555 D DC 3 1_555 A DA 6 1_555 D DT 2 1_555 0.229 0.131 3.483 -3.655 1.076 38.570 0.057 -0.820 3.450 1.624 5.517 38.751 3 BB_DG9DA10:DT73DC74_DD B 9 ? D 74 ? B 10 ? D 73 ? 1 A DA 6 1_555 D DT 2 1_555 A DC 7 1_555 D DG 1 1_555 0.821 -0.930 3.227 -7.491 1.418 33.439 -1.791 -2.517 2.939 2.426 12.812 34.273 4 BB_DA10DC11:DG72DT73_DD B 10 ? D 73 ? B 11 ? D 72 ? 1 A DC 7 1_555 D DG 1 1_555 A DT 8 1_555 B DA 7 1_555 -0.703 -1.172 3.226 1.125 -0.088 24.018 -2.786 2.043 3.194 -0.212 -2.702 24.044 5 BB_DC11DT12:DA71DG72_AD B 11 ? D 72 ? B 12 ? A 71 ? 1 A DT 8 1_555 B DA 7 1_555 A DC 9 1_555 B DG 6 1_555 -0.060 -0.297 3.332 -3.377 4.086 38.927 -0.936 -0.320 3.279 6.097 5.039 39.272 6 BB_DT12DC13:DG70DA71_AA B 12 ? A 71 ? B 13 ? A 70 ? 1 A DC 9 1_555 B DG 6 1_555 A DA 10 1_555 B DT 5 1_555 0.325 -0.148 3.088 -0.358 3.325 40.766 -0.555 -0.502 3.065 4.764 0.512 40.897 7 BB_DC13DA14:DT69DG70_AA B 13 ? A 70 ? B 14 ? A 69 ? 1 A DA 10 1_555 B DT 5 1_555 A DT 11 1_555 B DA 4 1_555 -0.022 -0.795 3.435 2.208 0.879 23.577 -2.242 0.818 3.387 2.144 -5.386 23.695 8 BB_DA14DT15:DA68DT69_AA B 14 ? A 69 ? B 15 ? A 68 ? 1 A DT 11 1_555 B DA 4 1_555 A DG 12 1_555 B DC 3 1_555 0.463 -0.762 3.240 1.299 2.127 34.702 -1.594 -0.580 3.204 3.560 -2.174 34.789 9 BB_DT15DG16:DC67DA68_AA B 15 ? A 68 ? B 16 ? A 67 ? 1 A DG 12 1_555 B DC 3 1_555 A DC 13 1_555 B DG 2 1_555 0.204 -0.939 3.354 -0.990 0.751 36.070 -1.625 -0.472 3.327 1.213 1.598 36.091 10 BB_DG16DC17:DG66DC67_AA B 16 ? A 67 ? B 17 ? A 66 ? 1 A DC 13 1_555 B DG 2 1_555 A DT 14 1_555 B DA 1 1_555 -0.262 -1.545 3.203 -0.374 2.191 32.185 -3.155 0.408 3.097 3.946 0.674 32.259 11 BB_DC17DT18:DA65DG66_AA B 17 ? A 66 ? B 18 ? A 65 ? 1 A DT 14 1_555 B DA 1 1_555 A DC 15 1_555 C DG 9 1_555 -0.138 -1.329 3.322 0.791 -3.246 27.980 -1.943 0.475 3.446 -6.683 -1.628 28.175 12 BB_DT18DC19:DG64DA65_CA B 18 ? A 65 ? B 19 ? C 64 ? 1 A DC 15 1_555 C DG 9 1_555 A DA 16 1_555 C DT 8 1_555 -0.300 -0.215 3.122 -2.732 7.592 32.791 -1.542 0.095 3.013 13.201 4.750 33.743 13 BB_DC19DA20:DT63DG64_CC B 19 ? C 64 ? B 20 ? C 63 ? 1 A DA 16 1_555 C DT 8 1_555 A DT 17 1_555 C DA 7 1_555 0.147 -0.951 3.338 1.071 2.233 31.648 -2.153 -0.070 3.268 4.086 -1.960 31.742 14 BB_DA20DT21:DA62DT63_CC B 20 ? C 63 ? B 21 ? C 62 ? 1 A DT 17 1_555 C DA 7 1_555 A DC 18 1_555 C DG 6 1_555 0.236 -0.796 3.173 3.433 2.417 39.381 -1.449 0.040 3.130 3.574 -5.076 39.595 15 BB_DT21DC22:DG61DA62_CC B 21 ? C 62 ? B 22 ? C 61 ? 1 A DC 18 1_555 C DG 6 1_555 A DT 19 1_555 C DA 5 1_555 -0.224 -0.504 3.263 2.245 0.851 27.755 -1.249 0.997 3.219 1.770 -4.669 27.857 16 BB_DC22DT23:DA60DG61_CC B 22 ? C 61 ? B 23 ? C 60 ? 1 A DT 19 1_555 C DA 5 1_555 A DG 20 1_555 C DC 4 1_555 0.454 2.252 3.743 8.041 2.007 42.780 2.809 0.297 3.860 2.721 -10.901 43.538 17 BB_DT23DG24:DC59DA60_CC B 23 ? C 60 ? B 24 ? C 59 ? 1 A DG 20 1_555 C DC 4 1_555 A DA 21 1_555 C DT 3 1_555 -1.011 1.229 3.175 -7.845 3.252 39.326 1.414 0.566 3.395 4.765 11.494 40.197 18 BB_DG24DA25:DT58DC59_CC B 24 ? C 59 ? B 25 ? C 58 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Science Foundation (NSF, United States)' 'United States' 1360635 1 'National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)' 'United States' R01GM104960 2 # _atom_sites.entry_id 6V6R _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.008635 _atom_sites.fract_transf_matrix[1][2] 0.004985 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009971 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022347 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol AS C H N O P # loop_