HEADER HYDROLASE 06-DEC-19 6V71 TITLE CRYSTAL STRUCTURE OF METALLO BETA LACTAMASE FROM HIRSCHIA BALTICA WITH TITLE 2 NITRATE IN THE ACTIVE SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HIRSCHIA BALTICA (STRAIN ATCC 49814 / DSM 5838 SOURCE 4 / IFAM 1418); SOURCE 5 ORGANISM_TAXID: 582402 KEYWDS HYDROLASE, STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF KEYWDS 2 INFECTIOUS DISEASES, CSGID EXPDTA X-RAY DIFFRACTION AUTHOR N.MALTSEVA,Y.KIM,S.CLANCY,M.ENDRES,R.MULLIGAN,A.JOACHIMIAK,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 3 11-OCT-23 6V71 1 REMARK REVDAT 2 01-JAN-20 6V71 1 REMARK REVDAT 1 25-DEC-19 6V71 0 JRNL AUTH N.MALTSEVA,Y.KIM,S.CLANCY,M.ENDRES,R.MULLIGAN,A.JOACHIMIAK, JRNL AUTH 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 3 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF METALLO BETA LACTAMASE FROM HIRSCHIA JRNL TITL 2 BALTICA WITH NITRATE IN THE ACTIVE SITE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 53219 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.162 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 2628 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.6800 - 3.7400 0.99 2943 148 0.1596 0.1739 REMARK 3 2 3.7300 - 2.9600 0.99 2814 122 0.1579 0.1692 REMARK 3 3 2.9600 - 2.5900 1.00 2785 166 0.1634 0.1639 REMARK 3 4 2.5900 - 2.3500 0.99 2737 134 0.1503 0.1691 REMARK 3 5 2.3500 - 2.1800 0.99 2769 151 0.1332 0.1524 REMARK 3 6 2.1800 - 2.0600 0.99 2738 146 0.1284 0.1561 REMARK 3 7 2.0600 - 1.9500 0.98 2706 147 0.1248 0.1500 REMARK 3 8 1.9500 - 1.8700 0.99 2742 125 0.1169 0.1429 REMARK 3 9 1.8700 - 1.8000 0.99 2698 145 0.1095 0.1391 REMARK 3 10 1.8000 - 1.7300 0.99 2729 127 0.1062 0.1384 REMARK 3 11 1.7300 - 1.6800 0.98 2680 143 0.1028 0.1381 REMARK 3 12 1.6800 - 1.6300 0.98 2701 150 0.1061 0.1611 REMARK 3 13 1.6300 - 1.5900 0.98 2680 130 0.1007 0.1454 REMARK 3 14 1.5900 - 1.5500 0.98 2649 159 0.0999 0.1378 REMARK 3 15 1.5500 - 1.5100 0.98 2675 147 0.1031 0.1357 REMARK 3 16 1.5100 - 1.4800 0.97 2655 139 0.1122 0.1663 REMARK 3 17 1.4800 - 1.4500 0.95 2585 142 0.1310 0.1827 REMARK 3 18 1.4500 - 1.4300 0.84 2309 106 0.1551 0.1703 REMARK 3 19 1.4300 - 1.4000 0.73 1996 101 0.1889 0.2129 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.109 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.368 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 1878 REMARK 3 ANGLE : 1.253 2551 REMARK 3 CHIRALITY : 0.102 276 REMARK 3 PLANARITY : 0.008 342 REMARK 3 DIHEDRAL : 17.750 678 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6V71 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1000245872. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53220 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 38.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06900 REMARK 200 FOR THE DATA SET : 35.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.61100 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 6V54 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4.0 M SODIUM NITRATE; 0.1M TRIS PH REMARK 280 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 38.68100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 22.33249 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 80.44033 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 38.68100 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 22.33249 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 80.44033 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 38.68100 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 22.33249 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 80.44033 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 38.68100 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 22.33249 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 80.44033 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 38.68100 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 22.33249 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 80.44033 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 38.68100 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 22.33249 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 80.44033 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.66497 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 160.88067 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 44.66497 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 160.88067 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 44.66497 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 160.88067 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 44.66497 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 160.88067 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 44.66497 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 160.88067 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 44.66497 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 160.88067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -219.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 38.68100 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -66.99746 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 77.36200 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 P PO4 A 319 LIES ON A SPECIAL POSITION. REMARK 375 O1 PO4 A 319 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 533 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 550 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 552 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 27 REMARK 465 ASN A 28 REMARK 465 ALA A 29 REMARK 465 GLN A 30 REMARK 465 SER A 31 REMARK 465 GLU A 32 REMARK 465 GLN A 33 REMARK 465 SER A 34 REMARK 465 THR A 35 REMARK 465 HIS A 36 REMARK 465 ILE A 37 REMARK 465 GLU A 38 REMARK 465 GLY A 39 REMARK 465 VAL A 40 REMARK 465 ALA A 41 REMARK 465 GLU A 42 REMARK 465 LYS A 260 REMARK 465 LEU A 261 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 78 -160.78 -110.04 REMARK 500 ASP A 86 147.32 76.56 REMARK 500 HIS A 116 172.18 179.98 REMARK 500 MET A 205 -17.02 77.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 116 NE2 REMARK 620 2 HIS A 118 ND1 100.9 REMARK 620 3 HIS A 180 NE2 101.7 108.6 REMARK 620 4 HOH A 431 O 118.1 112.7 113.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD2 REMARK 620 2 CYS A 199 SG 98.8 REMARK 620 3 HIS A 241 NE2 86.6 107.1 REMARK 620 4 NO3 A 304 O1 166.3 93.0 83.2 REMARK 620 5 HOH A 431 O 89.8 110.7 142.2 92.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 319 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP06558 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: IDP06558 RELATED DB: TARGETTRACK DBREF 6V71 A 30 261 UNP C6XID6 C6XID6_HIRBI 30 261 SEQADV 6V71 SER A 27 UNP C6XID6 EXPRESSION TAG SEQADV 6V71 ASN A 28 UNP C6XID6 EXPRESSION TAG SEQADV 6V71 ALA A 29 UNP C6XID6 EXPRESSION TAG SEQADV 6V71 THR A 257 UNP C6XID6 ALA 257 ENGINEERED MUTATION SEQRES 1 A 235 SER ASN ALA GLN SER GLU GLN SER THR HIS ILE GLU GLY SEQRES 2 A 235 VAL ALA GLU LYS PRO VAL GLU PHE VAL LYS LEU GLY THR SEQRES 3 A 235 GLY VAL TRP MET HIS THR GLY TYR LYS VAL VAL PRO PRO SEQRES 4 A 235 TRP GLY ASN ILE ARG THR ASN GLY LEU ILE ILE GLU ARG SEQRES 5 A 235 GLY ASP TYR SER VAL LEU VAL ASP THR ALA TRP ASN ASP SEQRES 6 A 235 ALA GLN THR ALA GLU ILE VAL ALA TRP ALA LYS ASP THR SEQRES 7 A 235 LEU GLN LYS PRO ILE ARG ALA SER ILE HIS THR HIS ALA SEQRES 8 A 235 HIS SER ASP LYS MET GLY GLY MET ASP ALA LEU HIS MET SEQRES 9 A 235 LEU GLY VAL GLU THR PHE ALA THR ASP LEU THR ASN ARG SEQRES 10 A 235 LEU ALA ILE GLU ARG GLY LEU MET PRO ALA LYS ASN VAL SEQRES 11 A 235 LEU ASN ILE SER GLU ILE GLY SER GLN ILE GLU TRP GLU SEQRES 12 A 235 GLY LEU THR ILE LEU TYR PRO GLY GLY GLY HIS SER GLU SEQRES 13 A 235 ASP ASN ILE VAL VAL ASN GLU GLY VAL ASN ASN ILE LEU SEQRES 14 A 235 PHE GLY GLY CYS MET ILE ARG PRO GLY MET THR THR SER SEQRES 15 A 235 LEU GLY ASN ILE ASP ASP ALA ASN LEU GLY TYR TRP SER SEQRES 16 A 235 LYS ALA VAL GLU ASN ALA ALA ASN ALA PHE PRO ASP SER SEQRES 17 A 235 GLN ILE VAL ILE PRO SER HIS GLY LYS PRO ALA GLY ARG SEQRES 18 A 235 GLU ILE LEU LYS ASN THR ALA TYR ILE THR ARG PRO LYS SEQRES 19 A 235 LEU HET ZN A 301 1 HET ZN A 302 1 HET EDO A 303 4 HET NO3 A 304 4 HET NO3 A 305 4 HET NO3 A 306 4 HET EDO A 307 4 HET NO3 A 308 4 HET NO3 A 309 4 HET NO3 A 310 4 HET NO3 A 311 4 HET EDO A 312 4 HET EDO A 313 4 HET EDO A 314 4 HET EDO A 315 4 HET EDO A 316 4 HET FMT A 317 3 HET NO3 A 318 4 HET PO4 A 319 5 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETNAM NO3 NITRATE ION HETNAM FMT FORMIC ACID HETNAM PO4 PHOSPHATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN 2(ZN 2+) FORMUL 4 EDO 7(C2 H6 O2) FORMUL 5 NO3 8(N O3 1-) FORMUL 18 FMT C H2 O2 FORMUL 20 PO4 O4 P 3- FORMUL 21 HOH *156(H2 O) HELIX 1 AA1 ASN A 90 THR A 104 1 15 HELIX 2 AA2 HIS A 118 GLY A 123 1 6 HELIX 3 AA3 GLY A 124 LEU A 131 1 8 HELIX 4 AA4 ASP A 139 ARG A 148 1 10 HELIX 5 AA5 CYS A 199 ILE A 201 5 3 HELIX 6 AA6 TYR A 219 PHE A 231 1 13 HELIX 7 AA7 ARG A 247 THR A 257 1 11 SHEET 1 AA1 7 GLU A 46 GLY A 51 0 SHEET 2 AA1 7 VAL A 54 VAL A 62 -1 O MET A 56 N VAL A 48 SHEET 3 AA1 7 ASN A 68 GLU A 77 -1 O ILE A 69 N LYS A 61 SHEET 4 AA1 7 SER A 82 VAL A 85 -1 O VAL A 83 N ILE A 76 SHEET 5 AA1 7 ILE A 109 ILE A 113 1 O ARG A 110 N SER A 82 SHEET 6 AA1 7 GLU A 134 THR A 138 1 O GLU A 134 N ARG A 110 SHEET 7 AA1 7 ASN A 155 LEU A 157 1 O LEU A 157 N ALA A 137 SHEET 1 AA2 5 GLN A 165 TRP A 168 0 SHEET 2 AA2 5 LEU A 171 LEU A 174 -1 O ILE A 173 N ILE A 166 SHEET 3 AA2 5 VAL A 186 GLU A 189 -1 O ASN A 188 N THR A 172 SHEET 4 AA2 5 ILE A 194 GLY A 198 -1 O PHE A 196 N VAL A 187 SHEET 5 AA2 5 ILE A 236 PRO A 239 1 O ILE A 236 N LEU A 195 LINK NE2 HIS A 116 ZN ZN A 302 1555 1555 2.03 LINK ND1 HIS A 118 ZN ZN A 302 1555 1555 2.00 LINK OD2 ASP A 120 ZN ZN A 301 1555 1555 2.10 LINK NE2 HIS A 180 ZN ZN A 302 1555 1555 2.01 LINK SG CYS A 199 ZN ZN A 301 1555 1555 2.31 LINK NE2 HIS A 241 ZN ZN A 301 1555 1555 2.08 LINK ZN ZN A 301 O1 NO3 A 304 1555 1555 2.34 LINK ZN ZN A 301 O HOH A 431 1555 1555 1.95 LINK ZN ZN A 302 O HOH A 431 1555 1555 1.95 CISPEP 1 PRO A 64 PRO A 65 0 3.32 SITE 1 AC1 6 ASP A 120 CYS A 199 HIS A 241 ZN A 302 SITE 2 AC1 6 NO3 A 304 HOH A 431 SITE 1 AC2 5 HIS A 116 HIS A 118 HIS A 180 ZN A 301 SITE 2 AC2 5 HOH A 431 SITE 1 AC3 8 THR A 138 LEU A 140 THR A 141 ILE A 159 SITE 2 AC3 8 TYR A 175 ASP A 183 NO3 A 308 HOH A 416 SITE 1 AC4 9 HIS A 180 CYS A 199 ARG A 202 GLY A 210 SITE 2 AC4 9 ASN A 211 HIS A 241 ZN A 301 HOH A 458 SITE 3 AC4 9 HOH A 501 SITE 1 AC5 5 LYS A 49 THR A 52 GLY A 53 GLU A 77 SITE 2 AC5 5 EDO A 315 SITE 1 AC6 7 ASN A 90 ASP A 91 GLY A 123 HOH A 403 SITE 2 AC6 7 HOH A 404 HOH A 410 HOH A 506 SITE 1 AC7 4 ALA A 215 ASN A 216 LEU A 217 GLY A 218 SITE 1 AC8 9 THR A 138 ASP A 139 LEU A 140 LEU A 157 SITE 2 AC8 9 ASN A 158 ILE A 159 SER A 160 EDO A 303 SITE 3 AC8 9 HOH A 454 SITE 1 AC9 3 ARG A 202 HIS A 241 LYS A 251 SITE 1 AD1 4 LYS A 61 ASN A 90 HOH A 407 HOH A 466 SITE 1 AD2 5 ILE A 69 ARG A 70 HIS A 241 HOH A 408 SITE 2 AD2 5 HOH A 479 SITE 1 AD3 6 VAL A 62 PRO A 64 PRO A 65 TRP A 66 SITE 2 AD3 6 GLY A 67 PRO A 232 SITE 1 AD4 6 THR A 52 GLY A 53 GLU A 77 ARG A 78 SITE 2 AD4 6 GLU A 189 HOH A 418 SITE 1 AD5 4 ASP A 91 ALA A 92 ALA A 95 HOH A 426 SITE 1 AD6 6 LYS A 49 LEU A 50 GLY A 51 LYS A 107 SITE 2 AD6 6 NO3 A 305 HOH A 474 SITE 1 AD7 4 ASN A 68 GLN A 235 GLY A 246 ARG A 247 SITE 1 AD8 5 MET A 56 ARG A 70 LYS A 243 PRO A 244 SITE 2 AD8 5 HOH A 453 SITE 1 AD9 6 SER A 208 GLY A 210 LYS A 251 TYR A 255 SITE 2 AD9 6 HOH A 464 HOH A 468 SITE 1 AE1 2 LYS A 154 HOH A 405 CRYST1 77.362 77.362 241.321 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012926 0.007463 0.000000 0.00000 SCALE2 0.000000 0.014926 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004144 0.00000