HEADER HYDROLASE 08-DEC-19 6V7H TITLE STRUCTURE OF CTX-M-14 BOUND TO VABORBACTAM AT 1.0 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: BLACTX-M-14; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ESBL, BORONATE, BETA-LACTAMASE, INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR O.A.PEMBERTON,Y.CHEN REVDAT 5 11-OCT-23 6V7H 1 COMPND HETNAM HETSYN REVDAT 4 30-SEP-20 6V7H 1 JRNL REVDAT 3 26-AUG-20 6V7H 1 JRNL REVDAT 2 19-AUG-20 6V7H 1 JRNL REVDAT 1 12-AUG-20 6V7H 0 JRNL AUTH O.A.PEMBERTON,R.TSIVKOVSKI,M.TOTROV,O.LOMOVSKAYA,Y.CHEN JRNL TITL STRUCTURAL BASIS AND BINDING KINETICS OF VABORBACTAM IN JRNL TITL 2 CLASS A BETA-LACTAMASE INHIBITION. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 64 2020 JRNL REFN ESSN 1098-6596 JRNL PMID 32778546 JRNL DOI 10.1128/AAC.00398-20 REMARK 2 REMARK 2 RESOLUTION. 1.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.630 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.4 REMARK 3 NUMBER OF REFLECTIONS : 228425 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.105 REMARK 3 R VALUE (WORKING SET) : 0.104 REMARK 3 FREE R VALUE : 0.121 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 22083 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.8800 - 3.1100 1.00 14885 895 0.1151 0.1417 REMARK 3 2 3.1100 - 2.4700 1.00 14999 762 0.1093 0.1189 REMARK 3 3 2.4700 - 2.1500 1.00 14879 828 0.1038 0.1171 REMARK 3 4 2.1500 - 1.9600 0.99 14967 789 0.1012 0.1153 REMARK 3 5 1.9600 - 1.8200 0.98 14741 801 0.1044 0.1212 REMARK 3 6 1.8200 - 1.7100 0.98 14624 811 0.1029 0.1230 REMARK 3 7 1.7100 - 1.6200 0.97 14670 718 0.0969 0.1077 REMARK 3 8 1.6200 - 1.5500 0.89 13253 726 0.0935 0.1094 REMARK 3 9 1.5500 - 1.4900 0.87 13009 702 0.0919 0.1082 REMARK 3 10 1.4900 - 1.4400 0.92 13848 717 0.0887 0.1067 REMARK 3 11 1.4400 - 1.4000 0.92 13814 803 0.0905 0.1059 REMARK 3 12 1.4000 - 1.3600 0.92 13738 790 0.0942 0.1140 REMARK 3 13 1.3600 - 1.3200 0.92 13717 787 0.0929 0.1183 REMARK 3 14 1.3200 - 1.2900 0.91 13557 814 0.0963 0.1135 REMARK 3 15 1.2900 - 1.2600 0.83 12386 716 0.0956 0.1125 REMARK 3 16 1.2600 - 1.2300 0.86 13019 734 0.0975 0.1222 REMARK 3 17 1.2300 - 1.2100 0.88 13304 736 0.0979 0.1182 REMARK 3 18 1.2100 - 1.1900 0.89 13372 686 0.0977 0.1194 REMARK 3 19 1.1900 - 1.1600 0.90 13565 713 0.0955 0.1125 REMARK 3 20 1.1600 - 1.1400 0.90 13459 785 0.0981 0.1045 REMARK 3 21 1.1400 - 1.1300 0.88 13179 747 0.0959 0.1210 REMARK 3 22 1.1300 - 1.1100 0.82 12260 635 0.1080 0.1305 REMARK 3 23 1.1100 - 1.0900 0.86 12859 719 0.1076 0.1195 REMARK 3 24 1.0900 - 1.0800 0.87 13008 758 0.1092 0.1218 REMARK 3 25 1.0800 - 1.0600 0.88 13140 737 0.1129 0.1256 REMARK 3 26 1.0600 - 1.0500 0.88 13247 751 0.1168 0.1303 REMARK 3 27 1.0500 - 1.0400 0.88 13172 702 0.1226 0.1369 REMARK 3 28 1.0400 - 1.0200 0.84 12664 712 0.1301 0.1457 REMARK 3 29 1.0200 - 1.0100 0.74 11149 547 0.1408 0.1527 REMARK 3 30 1.0100 - 1.0000 0.65 9786 462 0.1495 0.1730 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.050 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 9.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6V7H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1000245911. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM 7.2.1 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 228516 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.000 REMARK 200 RESOLUTION RANGE LOW (A) : 53.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.19800 REMARK 200 R SYM FOR SHELL (I) : 0.05300 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.1 REMARK 200 STARTING MODEL: 4UA6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M POTASSIUM PHOSPHATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.34750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PCA B 25 REMARK 465 THR B 26 REMARK 465 SER B 27 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 888 O HOH B 897 1.51 REMARK 500 HH21 ARG A 276 O HOH A 401 1.52 REMARK 500 HD22 ASN B 92 O HOH B 405 1.57 REMARK 500 OG SER B 70 B15 4D6 B 301 1.65 REMARK 500 OG SER A 70 B15 4D6 A 301 1.66 REMARK 500 O HOH A 778 O HOH A 873 1.72 REMARK 500 O HOH B 919 O HOH B 923 1.73 REMARK 500 O HOH A 533 O HOH A 579 1.74 REMARK 500 O HOH A 485 O HOH B 622 1.77 REMARK 500 O HOH A 847 O HOH A 893 1.78 REMARK 500 O HOH A 435 O HOH A 461 1.86 REMARK 500 O HOH B 416 O HOH B 682 1.86 REMARK 500 O HOH B 696 O HOH B 759 1.87 REMARK 500 O HOH A 778 O HOH A 801 1.89 REMARK 500 O HOH A 429 O HOH A 570 1.90 REMARK 500 O HOH B 433 O HOH B 810 1.91 REMARK 500 O HOH A 482 O HOH A 667 1.92 REMARK 500 O HOH B 416 O HOH B 720 1.92 REMARK 500 O HOH A 651 O HOH A 703 1.93 REMARK 500 O HOH A 849 O HOH A 859 1.95 REMARK 500 O HOH B 408 O HOH B 655 1.99 REMARK 500 O HOH A 534 O HOH A 663 1.99 REMARK 500 O HOH B 403 O HOH B 700 1.99 REMARK 500 O HOH A 872 O HOH A 881 2.02 REMARK 500 NH2 ARG A 276 O HOH A 401 2.05 REMARK 500 O HOH A 752 O HOH A 767 2.06 REMARK 500 O HOH B 790 O HOH B 860 2.06 REMARK 500 O HOH B 707 O HOH B 711 2.06 REMARK 500 OE2 GLU B 158 O HOH B 401 2.09 REMARK 500 O HOH A 646 O HOH A 782 2.09 REMARK 500 O HOH B 617 O HOH B 814 2.09 REMARK 500 O HOH A 412 O HOH A 640 2.10 REMARK 500 O HOH A 620 O HOH A 774 2.11 REMARK 500 O HOH B 578 O HOH B 764 2.11 REMARK 500 O HOH B 449 O HOH B 526 2.12 REMARK 500 O HOH A 401 O HOH A 768 2.14 REMARK 500 O HOH A 460 O HOH A 522 2.14 REMARK 500 O HOH A 631 O HOH A 759 2.14 REMARK 500 O HOH B 487 O HOH B 815 2.15 REMARK 500 O HOH A 720 O HOH A 731 2.15 REMARK 500 O HOH A 760 O HOH A 777 2.16 REMARK 500 O HOH B 422 O HOH B 529 2.16 REMARK 500 O HOH B 545 O HOH B 595 2.17 REMARK 500 O HOH A 888 O HOH A 917 2.17 REMARK 500 OG SER B 70 O27 4D6 B 301 2.17 REMARK 500 O HOH A 523 O HOH A 721 2.18 REMARK 500 O HOH B 574 O HOH B 887 2.18 REMARK 500 O HOH A 625 O HOH A 881 2.19 REMARK 500 O HOH A 420 O HOH A 711 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 158 O HOH A 761 2545 2.02 REMARK 500 O19 WXM B 302 O HOH B 760 1455 2.02 REMARK 500 NE2 GLN A 93 O HOH A 703 1554 2.18 REMARK 500 O4 PO4 A 303 O HOH B 900 1554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 65 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 69 -139.94 50.29 REMARK 500 VAL A 103 -132.54 -118.33 REMARK 500 ASN A 106 48.54 -143.32 REMARK 500 ASN A 106 64.33 -155.89 REMARK 500 SER A 220 -126.08 -105.93 REMARK 500 CYS B 69 -139.05 50.35 REMARK 500 VAL B 103 -136.13 -115.02 REMARK 500 SER B 220 -129.44 -106.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 911 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 912 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 913 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A 914 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A 915 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A 916 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A 917 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A 918 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A 919 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A 920 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH A 921 DISTANCE = 7.61 ANGSTROMS REMARK 525 HOH B 915 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B 916 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH B 917 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH B 918 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH B 919 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH B 920 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH B 921 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH B 922 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH B 923 DISTANCE = 6.99 ANGSTROMS REMARK 525 HOH B 924 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH B 925 DISTANCE = 7.71 ANGSTROMS REMARK 525 HOH B 926 DISTANCE = 7.80 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 304 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 147 O REMARK 620 2 HOH A 568 O 103.6 REMARK 620 3 HOH A 728 O 120.4 134.8 REMARK 620 4 HOH A 749 O 121.8 56.6 89.4 REMARK 620 5 HOH A 843 O 108.7 64.9 106.3 108.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 305 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 156 O REMARK 620 2 HOH A 662 O 106.5 REMARK 620 3 HOH B 498 O 107.6 1.6 REMARK 620 4 HOH B 907 O 107.4 3.8 4.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4D6 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue WXM A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue WXM B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 4D6 B 301 and SER B REMARK 800 70 DBREF1 6V7H A 25 290 UNP A0A2S1PK93_ECOLX DBREF2 6V7H A A0A2S1PK93 24 286 DBREF1 6V7H B 25 290 UNP A0A2S1PK93_ECOLX DBREF2 6V7H B A0A2S1PK93 24 286 SEQRES 1 A 263 PCA THR SER ALA VAL GLN GLN LYS LEU ALA ALA LEU GLU SEQRES 2 A 263 LYS SER SER GLY GLY ARG LEU GLY VAL ALA LEU ILE ASP SEQRES 3 A 263 THR ALA ASP ASN THR GLN VAL LEU TYR ARG GLY ASP GLU SEQRES 4 A 263 ARG PHE PRO MET CYS SER THR SER LYS VAL MET ALA ALA SEQRES 5 A 263 ALA ALA VAL LEU LYS GLN SER GLU THR GLN LYS GLN LEU SEQRES 6 A 263 LEU ASN GLN PRO VAL GLU ILE LYS PRO ALA ASP LEU VAL SEQRES 7 A 263 ASN TYR ASN PRO ILE ALA GLU LYS HIS VAL ASN GLY THR SEQRES 8 A 263 MET THR LEU ALA GLU LEU SER ALA ALA ALA LEU GLN TYR SEQRES 9 A 263 SER ASP ASN THR ALA MET ASN LYS LEU ILE ALA GLN LEU SEQRES 10 A 263 GLY GLY PRO GLY GLY VAL THR ALA PHE ALA ARG ALA ILE SEQRES 11 A 263 GLY ASP GLU THR PHE ARG LEU ASP ARG THR GLU PRO THR SEQRES 12 A 263 LEU ASN THR ALA ILE PRO GLY ASP PRO ARG ASP THR THR SEQRES 13 A 263 THR PRO ARG ALA MET ALA GLN THR LEU ARG GLN LEU THR SEQRES 14 A 263 LEU GLY HIS ALA LEU GLY GLU THR GLN ARG ALA GLN LEU SEQRES 15 A 263 VAL THR TRP LEU LYS GLY ASN THR THR GLY ALA ALA SER SEQRES 16 A 263 ILE ARG ALA GLY LEU PRO THR SER TRP THR VAL GLY ASP SEQRES 17 A 263 LYS THR GLY SER GLY ASP TYR GLY THR THR ASN ASP ILE SEQRES 18 A 263 ALA VAL ILE TRP PRO GLN GLY ARG ALA PRO LEU VAL LEU SEQRES 19 A 263 VAL THR TYR PHE THR GLN PRO GLN GLN ASN ALA GLU SER SEQRES 20 A 263 ARG ARG ASP VAL LEU ALA SER ALA ALA ARG ILE ILE ALA SEQRES 21 A 263 GLU GLY LEU SEQRES 1 B 263 PCA THR SER ALA VAL GLN GLN LYS LEU ALA ALA LEU GLU SEQRES 2 B 263 LYS SER SER GLY GLY ARG LEU GLY VAL ALA LEU ILE ASP SEQRES 3 B 263 THR ALA ASP ASN THR GLN VAL LEU TYR ARG GLY ASP GLU SEQRES 4 B 263 ARG PHE PRO MET CYS SER THR SER LYS VAL MET ALA ALA SEQRES 5 B 263 ALA ALA VAL LEU LYS GLN SER GLU THR GLN LYS GLN LEU SEQRES 6 B 263 LEU ASN GLN PRO VAL GLU ILE LYS PRO ALA ASP LEU VAL SEQRES 7 B 263 ASN TYR ASN PRO ILE ALA GLU LYS HIS VAL ASN GLY THR SEQRES 8 B 263 MET THR LEU ALA GLU LEU SER ALA ALA ALA LEU GLN TYR SEQRES 9 B 263 SER ASP ASN THR ALA MET ASN LYS LEU ILE ALA GLN LEU SEQRES 10 B 263 GLY GLY PRO GLY GLY VAL THR ALA PHE ALA ARG ALA ILE SEQRES 11 B 263 GLY ASP GLU THR PHE ARG LEU ASP ARG THR GLU PRO THR SEQRES 12 B 263 LEU ASN THR ALA ILE PRO GLY ASP PRO ARG ASP THR THR SEQRES 13 B 263 THR PRO ARG ALA MET ALA GLN THR LEU ARG GLN LEU THR SEQRES 14 B 263 LEU GLY HIS ALA LEU GLY GLU THR GLN ARG ALA GLN LEU SEQRES 15 B 263 VAL THR TRP LEU LYS GLY ASN THR THR GLY ALA ALA SER SEQRES 16 B 263 ILE ARG ALA GLY LEU PRO THR SER TRP THR VAL GLY ASP SEQRES 17 B 263 LYS THR GLY SER GLY ASP TYR GLY THR THR ASN ASP ILE SEQRES 18 B 263 ALA VAL ILE TRP PRO GLN GLY ARG ALA PRO LEU VAL LEU SEQRES 19 B 263 VAL THR TYR PHE THR GLN PRO GLN GLN ASN ALA GLU SER SEQRES 20 B 263 ARG ARG ASP VAL LEU ALA SER ALA ALA ARG ILE ILE ALA SEQRES 21 B 263 GLU GLY LEU MODRES 6V7H PCA A 25 GLN MODIFIED RESIDUE HET PCA A 25 13 HET 4D6 A 301 40 HET WXM A 302 21 HET PO4 A 303 5 HET K A 304 1 HET 4D6 B 301 40 HET WXM B 302 21 HET PO4 B 303 5 HET PO4 B 304 5 HET K B 305 1 HETNAM PCA PYROGLUTAMIC ACID HETNAM 4D6 VABORBACTAM HETNAM WXM 2-[(3~{R},6~{S})-2,2-BIS(OXIDANYL)-3-(2-THIOPHEN-2- HETNAM 2 WXM YLETHANOYLAMINO)-1-OXA-2-BORANUIDACYCLOHEX-6- HETNAM 3 WXM YL]ETHANOIC ACID HETNAM PO4 PHOSPHATE ION HETNAM K POTASSIUM ION HETSYN 4D6 {(3R,6S)-2-HYDROXY-3-[(THIOPHEN-2-YLACETYL)AMINO]-1,2- HETSYN 2 4D6 OXABORINAN-6-YL}ACETIC ACID; 2-((3R,6S)-2-HYDROXY-3- HETSYN 3 4D6 (2-(THIOPHEN-2-YL)ACETAMIDO)-1,2-OXABORINAN-6-YL) HETSYN 4 4D6 ACETIC ACID; 2-[(3R,6S)-2-HYDROXY-3-[(2-THIOPHEN-2- HETSYN 5 4D6 YLACETYL)AMINO]OXABORINAN-6-YL]ACETIC ACID; 1,2- HETSYN 6 4D6 OXABORINANE-6-ACETIC ACID, 2-HYDROXY-3-((2-(2- HETSYN 7 4D6 THIENYL)ACETYL)AMINO)-, (3R,6S)- FORMUL 1 PCA C5 H7 N O3 FORMUL 3 4D6 2(C12 H16 B N O5 S) FORMUL 4 WXM 2(C12 H17 B N O6 S 1-) FORMUL 5 PO4 3(O4 P 3-) FORMUL 6 K 2(K 1+) FORMUL 12 HOH *1047(H2 O) HELIX 1 AA1 SER A 27 GLY A 41 1 15 HELIX 2 AA2 CYS A 69 THR A 71 5 3 HELIX 3 AA3 SER A 72 GLU A 85 1 14 HELIX 4 AA4 GLN A 89 ASN A 92 5 4 HELIX 5 AA5 LYS A 98 LEU A 102 5 5 HELIX 6 AA6 ILE A 108 VAL A 113 5 6 HELIX 7 AA7 LEU A 119 SER A 130 1 12 HELIX 8 AA8 ASP A 131 LEU A 142 1 12 HELIX 9 AA9 GLY A 144 ILE A 155 1 12 HELIX 10 AB1 PRO A 167 THR A 171 5 5 HELIX 11 AB2 THR A 182 LEU A 195 1 14 HELIX 12 AB3 GLY A 200 GLY A 213 1 14 HELIX 13 AB4 SER A 220 LEU A 225 5 6 HELIX 14 AB5 ARG A 275 LEU A 290 1 16 HELIX 15 AB6 VAL B 29 GLY B 41 1 13 HELIX 16 AB7 CYS B 69 THR B 71 5 3 HELIX 17 AB8 SER B 72 GLU B 85 1 14 HELIX 18 AB9 GLN B 89 ASN B 92 5 4 HELIX 19 AC1 LYS B 98 LEU B 102 5 5 HELIX 20 AC2 ILE B 108 VAL B 113 5 6 HELIX 21 AC3 LEU B 119 SER B 130 1 12 HELIX 22 AC4 ASP B 131 LEU B 142 1 12 HELIX 23 AC5 GLY B 144 ILE B 155 1 12 HELIX 24 AC6 PRO B 167 THR B 171 5 5 HELIX 25 AC7 THR B 182 LEU B 195 1 14 HELIX 26 AC8 GLY B 200 GLY B 213 1 14 HELIX 27 AC9 SER B 220 LEU B 225 5 6 HELIX 28 AD1 ARG B 275 GLY B 289 1 15 SHEET 1 AA1 5 GLN A 56 TYR A 60 0 SHEET 2 AA1 5 ARG A 43 ASP A 50 -1 N LEU A 48 O VAL A 57 SHEET 3 AA1 5 LEU A 259 THR A 266 -1 O TYR A 264 N GLY A 45 SHEET 4 AA1 5 THR A 243 TRP A 251 -1 N ILE A 250 O LEU A 259 SHEET 5 AA1 5 THR A 230 GLY A 238 -1 N THR A 230 O TRP A 251 SHEET 1 AA2 2 PHE A 66 PRO A 67 0 SHEET 2 AA2 2 THR A 180 THR A 181 -1 O THR A 181 N PHE A 66 SHEET 1 AA3 2 PRO A 94 ILE A 97 0 SHEET 2 AA3 2 GLY A 115 THR A 118 -1 O GLY A 115 N ILE A 97 SHEET 1 AA4 5 GLN B 56 TYR B 60 0 SHEET 2 AA4 5 ARG B 43 ASP B 50 -1 N VAL B 46 O TYR B 60 SHEET 3 AA4 5 LEU B 259 THR B 266 -1 O TYR B 264 N GLY B 45 SHEET 4 AA4 5 THR B 243 TRP B 251 -1 N ILE B 250 O LEU B 259 SHEET 5 AA4 5 THR B 230 GLY B 238 -1 N THR B 230 O TRP B 251 SHEET 1 AA5 2 PHE B 66 PRO B 67 0 SHEET 2 AA5 2 THR B 180 THR B 181 -1 O THR B 181 N PHE B 66 SHEET 1 AA6 2 PRO B 94 ILE B 97 0 SHEET 2 AA6 2 GLY B 115 THR B 118 -1 O GLY B 115 N ILE B 97 LINK C PCA A 25 N THR A 26 1555 1555 1.33 LINK OG SER A 70 B15A4D6 A 301 1555 1555 1.62 LINK OG SER B 70 B15A4D6 B 301 1555 1555 1.61 LINK O GLY A 147 K K A 304 1555 1555 2.72 LINK O GLY A 156 K K B 305 1555 2454 2.77 LINK K K A 304 O HOH A 568 1555 1555 3.04 LINK K K A 304 O HOH A 728 1555 1555 2.64 LINK K K A 304 O HOH A 749 1555 1555 2.81 LINK K K A 304 O HOH A 843 1555 1555 2.81 LINK O HOH A 662 K K B 305 2444 1555 2.72 LINK K K B 305 O HOH B 498 1555 1555 2.76 LINK K K B 305 O HOH B 907 1555 1555 2.72 CISPEP 1 GLU A 166 PRO A 167 0 4.83 CISPEP 2 GLU B 166 PRO B 167 0 7.14 SITE 1 AC1 17 CYS A 69 SER A 70 LYS A 73 ASN A 104 SITE 2 AC1 17 SER A 130 ASN A 132 PRO A 167 ASN A 170 SITE 3 AC1 17 LYS A 234 THR A 235 GLY A 236 SER A 237 SITE 4 AC1 17 ASP A 240 ARG A 276 WXM A 302 HOH A 416 SITE 5 AC1 17 HOH A 421 SITE 1 AC2 7 ASN A 104 TYR A 105 4D6 A 301 HOH A 410 SITE 2 AC2 7 HOH A 516 THR B 227 WXM B 302 SITE 1 AC3 9 LYS A 111 HOH A 426 HOH A 445 HOH A 494 SITE 2 AC3 9 HOH A 501 LYS B 38 HOH B 803 HOH B 900 SITE 3 AC3 9 HOH B 906 SITE 1 AC4 6 GLY A 147 ALA A 150 HOH A 568 HOH A 728 SITE 2 AC4 6 HOH A 749 HOH A 843 SITE 1 AC5 9 THR A 227 WXM A 302 HOH A 674 ASN B 104 SITE 2 AC5 9 TYR B 105 4D6 B 301 HOH B 410 HOH B 672 SITE 3 AC5 9 HOH B 760 SITE 1 AC6 6 THR B 202 GLN B 203 HOH B 412 HOH B 435 SITE 2 AC6 6 HOH B 450 HOH B 819 SITE 1 AC7 6 HIS B 197 ARG B 204 HOH B 425 HOH B 445 SITE 2 AC7 6 HOH B 552 HOH B 660 SITE 1 AC8 2 HOH B 498 HOH B 907 SITE 1 AC9 19 MET B 68 CYS B 69 THR B 71 SER B 72 SITE 2 AC9 19 LYS B 73 ASN B 104 SER B 130 ASN B 132 SITE 3 AC9 19 PRO B 167 ASN B 170 LYS B 234 THR B 235 SITE 4 AC9 19 GLY B 236 SER B 237 ASP B 240 ARG B 276 SITE 5 AC9 19 WXM B 302 HOH B 413 HOH B 415 CRYST1 45.300 106.695 47.865 90.00 101.64 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022075 0.000000 0.004547 0.00000 SCALE2 0.000000 0.009373 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021331 0.00000 HETATM 1 N PCA A 25 -19.190 22.900 -3.646 1.00 18.45 N ANISOU 1 N PCA A 25 2783 2111 2116 776 1316 324 N HETATM 2 CA PCA A 25 -19.729 22.038 -2.598 1.00 17.17 C ANISOU 2 CA PCA A 25 2504 2059 1963 754 1172 235 C HETATM 3 CB PCA A 25 -21.031 21.684 -3.044 1.00 18.59 C ANISOU 3 CB PCA A 25 2915 2105 2044 808 1064 253 C HETATM 4 CG PCA A 25 -20.998 21.808 -4.594 1.00 19.77 C ANISOU 4 CG PCA A 25 3197 2140 2173 814 1058 309 C HETATM 5 CD PCA A 25 -19.854 22.825 -4.805 1.00 19.97 C ANISOU 5 CD PCA A 25 3222 2181 2185 803 1298 382 C HETATM 6 OE PCA A 25 -19.608 23.425 -5.802 1.00 21.67 O ANISOU 6 OE PCA A 25 3630 2252 2353 758 1310 474 O HETATM 7 C PCA A 25 -18.878 20.819 -2.346 1.00 15.71 C ANISOU 7 C PCA A 25 2135 1974 1860 711 1010 110 C HETATM 8 O PCA A 25 -18.040 20.431 -3.194 1.00 16.60 O ANISOU 8 O PCA A 25 2291 2018 1996 755 1089 145 O HETATM 9 HA PCA A 25 -19.809 22.574 -1.793 1.00 20.61 H HETATM 10 HB2 PCA A 25 -21.233 20.770 -2.789 1.00 22.31 H HETATM 11 HB3 PCA A 25 -21.687 22.296 -2.676 1.00 22.31 H HETATM 12 HG2 PCA A 25 -20.786 20.956 -5.007 1.00 23.72 H HETATM 13 HG3 PCA A 25 -21.838 22.154 -4.933 1.00 23.72 H