HEADER PEPTIDE BINDING PROTEIN 09-DEC-19 6V7Q TITLE CRYSTAL STRUCTURE OF SUMO1 IN COMPLEX WITH PHOSPHORYLATED PIAS-SIM2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMALL UBIQUITIN-RELATED MODIFIER 1; COMPND 3 CHAIN: C, A; COMPND 4 SYNONYM: SUMO-1,GAP-MODIFYING PROTEIN 1,GMP1,SMT3 HOMOLOG 3,SENTRIN, COMPND 5 UBIQUITIN-HOMOLOGY DOMAIN PROTEIN PIC1,UBIQUITIN-LIKE PROTEIN SMT3C, COMPND 6 SMT3C,UBIQUITIN-LIKE PROTEIN UBL1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PROTEIN PIAS; COMPND 10 CHAIN: D, B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SUMO1, SMT3C, SMT3H3, UBL1, OK/SW-CL.43; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TOPP2; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SUMO1, PIAS, SUMO INTERACTION MOTIF, PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.LUSSIER-PRICE,H.M.WAHBA,X.H.MASCLE,L.CAPPADOCIA,K.SAKAGUCHI, AUTHOR 2 J.G.OMICHINSKI REVDAT 3 11-OCT-23 6V7Q 1 REMARK REVDAT 2 27-MAY-20 6V7Q 1 JRNL REVDAT 1 01-APR-20 6V7Q 0 JRNL AUTH M.LUSSIER-PRICE,X.H.MASCLE,L.CAPPADOCIA,R.KAMADA, JRNL AUTH 2 K.SAKAGUCHI,H.M.WAHBA,J.G.OMICHINSKI JRNL TITL CHARACTERIZATION OF A C-TERMINAL SUMO-INTERACTING MOTIF JRNL TITL 2 PRESENT IN SELECT PIAS-FAMILY PROTEINS. JRNL REF STRUCTURE V. 28 573 2020 JRNL REFN ISSN 0969-2126 JRNL PMID 32348746 JRNL DOI 10.1016/J.STR.2020.04.002 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13-2998_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 38571 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.9100 - 3.2538 1.00 2945 163 0.1642 0.1716 REMARK 3 2 3.2538 - 2.5828 1.00 2804 155 0.1761 0.2274 REMARK 3 3 2.5828 - 2.2564 1.00 2773 152 0.1630 0.1735 REMARK 3 4 2.2564 - 2.0501 1.00 2762 158 0.1596 0.1956 REMARK 3 5 2.0501 - 1.9032 1.00 2762 145 0.1597 0.1825 REMARK 3 6 1.9032 - 1.7910 1.00 2736 149 0.1746 0.2122 REMARK 3 7 1.7910 - 1.7013 1.00 2713 152 0.1839 0.1949 REMARK 3 8 1.7013 - 1.6272 1.00 2742 141 0.1800 0.2094 REMARK 3 9 1.6272 - 1.5646 0.98 2636 151 0.1748 0.2200 REMARK 3 10 1.5646 - 1.5106 0.98 2661 145 0.1827 0.2094 REMARK 3 11 1.5106 - 1.4634 0.97 2631 144 0.1912 0.2402 REMARK 3 12 1.4634 - 1.4215 0.91 2448 139 0.1987 0.2574 REMARK 3 13 1.4215 - 1.3841 0.80 2159 112 0.2180 0.2109 REMARK 3 14 1.3841 - 1.3503 0.66 1795 98 0.2286 0.2439 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 17 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4842 1.8587 -34.8751 REMARK 3 T TENSOR REMARK 3 T11: 0.1594 T22: 0.0868 REMARK 3 T33: 0.1788 T12: 0.0070 REMARK 3 T13: 0.0152 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 0.8710 L22: 0.7404 REMARK 3 L33: 1.9536 L12: 0.2366 REMARK 3 L13: -0.0375 L23: -0.1707 REMARK 3 S TENSOR REMARK 3 S11: 0.1101 S12: 0.0261 S13: 0.2314 REMARK 3 S21: -0.0179 S22: -0.0111 S23: -0.1188 REMARK 3 S31: 0.0477 S32: -0.2263 S33: 0.0346 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 33 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9101 -2.3099 -33.1275 REMARK 3 T TENSOR REMARK 3 T11: 0.1305 T22: 0.0661 REMARK 3 T33: 0.1434 T12: -0.0062 REMARK 3 T13: 0.0010 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 0.5273 L22: 0.2720 REMARK 3 L33: 3.5514 L12: -0.0626 REMARK 3 L13: -0.6911 L23: -0.6939 REMARK 3 S TENSOR REMARK 3 S11: 0.0334 S12: 0.0973 S13: 0.0337 REMARK 3 S21: 0.0250 S22: 0.1111 S23: 0.0179 REMARK 3 S31: 0.0875 S32: -0.4310 S33: 0.0529 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 44 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3383 -5.6325 -25.5634 REMARK 3 T TENSOR REMARK 3 T11: 0.1485 T22: 0.0020 REMARK 3 T33: 0.1028 T12: -0.0110 REMARK 3 T13: -0.0233 T23: 0.0353 REMARK 3 L TENSOR REMARK 3 L11: 0.1989 L22: 0.3727 REMARK 3 L33: 0.1883 L12: -0.1012 REMARK 3 L13: 0.1924 L23: -0.1281 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: -0.0436 S13: -0.0624 REMARK 3 S21: 0.0883 S22: 0.0376 S23: 0.0362 REMARK 3 S31: 0.0380 S32: -0.0389 S33: 0.2688 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 56 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1962 0.2125 -19.8906 REMARK 3 T TENSOR REMARK 3 T11: 0.1916 T22: 0.1077 REMARK 3 T33: 0.1169 T12: -0.0254 REMARK 3 T13: -0.0329 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 1.8388 L22: 2.2296 REMARK 3 L33: 0.3391 L12: -0.1824 REMARK 3 L13: -0.3199 L23: -0.7590 REMARK 3 S TENSOR REMARK 3 S11: 0.1008 S12: -0.3979 S13: -0.0890 REMARK 3 S21: 0.4598 S22: 0.0273 S23: 0.0714 REMARK 3 S31: -0.0819 S32: 0.0722 S33: 0.1340 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 66 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3903 6.6079 -23.8150 REMARK 3 T TENSOR REMARK 3 T11: 0.2400 T22: 0.1104 REMARK 3 T33: 0.1558 T12: 0.0265 REMARK 3 T13: 0.0530 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 3.0583 L22: 1.3887 REMARK 3 L33: 0.3665 L12: 1.1114 REMARK 3 L13: 0.8178 L23: -0.0835 REMARK 3 S TENSOR REMARK 3 S11: 0.1299 S12: -0.3667 S13: 0.2994 REMARK 3 S21: 0.3563 S22: -0.0787 S23: 0.1474 REMARK 3 S31: -0.2239 S32: -0.1078 S33: -0.0185 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 77 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9048 5.7608 -33.9112 REMARK 3 T TENSOR REMARK 3 T11: 0.1495 T22: 0.1467 REMARK 3 T33: 0.1746 T12: 0.0431 REMARK 3 T13: 0.0199 T23: 0.0438 REMARK 3 L TENSOR REMARK 3 L11: 0.3410 L22: 0.2846 REMARK 3 L33: 0.3207 L12: 0.1487 REMARK 3 L13: -0.0466 L23: -0.2518 REMARK 3 S TENSOR REMARK 3 S11: 0.0713 S12: 0.0331 S13: 0.2293 REMARK 3 S21: 0.2230 S22: 0.2151 S23: 0.2661 REMARK 3 S31: -0.1667 S32: -0.4297 S33: 0.0136 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 87 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5925 6.0416 -24.4408 REMARK 3 T TENSOR REMARK 3 T11: 0.1622 T22: 0.0684 REMARK 3 T33: 0.1242 T12: -0.0181 REMARK 3 T13: -0.0189 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 2.0882 L22: 2.1276 REMARK 3 L33: 0.7665 L12: 0.5314 REMARK 3 L13: -0.6089 L23: 0.3519 REMARK 3 S TENSOR REMARK 3 S11: 0.1041 S12: -0.2948 S13: 0.0283 REMARK 3 S21: 0.3367 S22: -0.1224 S23: -0.2491 REMARK 3 S31: 0.0319 S32: 0.0964 S33: -0.0757 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 8 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0322 -7.5125 -36.4294 REMARK 3 T TENSOR REMARK 3 T11: 0.2608 T22: 0.1795 REMARK 3 T33: 0.2838 T12: -0.0082 REMARK 3 T13: 0.0328 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 2.2885 L22: 0.3058 REMARK 3 L33: 0.9453 L12: 0.5487 REMARK 3 L13: -0.8113 L23: -0.5233 REMARK 3 S TENSOR REMARK 3 S11: -0.1593 S12: 0.4153 S13: -0.2631 REMARK 3 S21: -0.2025 S22: -0.0374 S23: -0.1649 REMARK 3 S31: 0.3161 S32: -0.0499 S33: -0.0310 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8247 2.3488 -59.8536 REMARK 3 T TENSOR REMARK 3 T11: 0.1004 T22: 0.1509 REMARK 3 T33: 0.1414 T12: -0.0028 REMARK 3 T13: 0.0185 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.8393 L22: 0.7507 REMARK 3 L33: 0.9510 L12: -0.0398 REMARK 3 L13: 0.4404 L23: 0.0407 REMARK 3 S TENSOR REMARK 3 S11: 0.0929 S12: 0.3688 S13: -0.1760 REMARK 3 S21: -0.1856 S22: -0.1560 S23: 0.0621 REMARK 3 S31: 0.1398 S32: 0.1253 S33: -0.0054 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2389 5.4065 -52.3059 REMARK 3 T TENSOR REMARK 3 T11: 0.0651 T22: 0.1755 REMARK 3 T33: 0.0831 T12: -0.0034 REMARK 3 T13: -0.0035 T23: 0.0344 REMARK 3 L TENSOR REMARK 3 L11: 0.4570 L22: 0.3576 REMARK 3 L33: 1.5786 L12: 0.2188 REMARK 3 L13: 0.1971 L23: 0.5967 REMARK 3 S TENSOR REMARK 3 S11: 0.0745 S12: -0.1383 S13: -0.1017 REMARK 3 S21: 0.0995 S22: -0.0008 S23: -0.0011 REMARK 3 S31: 0.2328 S32: 0.1219 S33: 0.1560 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9545 14.4758 -51.1918 REMARK 3 T TENSOR REMARK 3 T11: 0.1186 T22: 0.1982 REMARK 3 T33: 0.1184 T12: -0.0130 REMARK 3 T13: -0.0140 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.5225 L22: 1.5272 REMARK 3 L33: 0.3595 L12: -0.4701 REMARK 3 L13: -0.3803 L23: 0.0478 REMARK 3 S TENSOR REMARK 3 S11: -0.0783 S12: -0.4037 S13: 0.2335 REMARK 3 S21: 0.0023 S22: 0.0034 S23: -0.1547 REMARK 3 S31: -0.2386 S32: 0.0391 S33: 0.0287 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.2962 4.6777 -51.6137 REMARK 3 T TENSOR REMARK 3 T11: 0.0949 T22: 0.1693 REMARK 3 T33: 0.0886 T12: -0.0258 REMARK 3 T13: 0.0003 T23: 0.0262 REMARK 3 L TENSOR REMARK 3 L11: 0.6241 L22: 0.3473 REMARK 3 L33: 1.1102 L12: -0.0691 REMARK 3 L13: 0.2413 L23: -0.3446 REMARK 3 S TENSOR REMARK 3 S11: 0.0364 S12: -0.1552 S13: -0.0441 REMARK 3 S21: 0.1034 S22: -0.0256 S23: 0.0239 REMARK 3 S31: 0.0643 S32: -0.2965 S33: -0.0142 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6711 3.0826 -64.7506 REMARK 3 T TENSOR REMARK 3 T11: 0.1515 T22: 0.2454 REMARK 3 T33: 0.1585 T12: -0.0021 REMARK 3 T13: 0.0222 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.6758 L22: 0.4135 REMARK 3 L33: 1.6253 L12: 0.1046 REMARK 3 L13: -0.3006 L23: -0.0724 REMARK 3 S TENSOR REMARK 3 S11: -0.1806 S12: -0.0706 S13: -0.2343 REMARK 3 S21: -0.1723 S22: 0.0710 S23: -0.0759 REMARK 3 S31: 0.3565 S32: 0.0788 S33: -0.1603 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6V7Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1000245618. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.10 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38573 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 36.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6UYO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CACODYLATE PH 6.5, 19 TO REMARK 280 31% (W/V) PEG3350 AND 10 MM CALCIUM CHLORIDE., VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.15750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.62100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.37450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.62100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.15750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 19.37450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 15 REMARK 465 SER C 16 REMARK 465 GLN C 94 REMARK 465 THR C 95 REMARK 465 GLY C 96 REMARK 465 GLY C 97 REMARK 465 GLY D 3 REMARK 465 SER D 4 REMARK 465 GLY D 5 REMARK 465 GLU D 6 REMARK 465 ALA D 7 REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 LYS A 17 REMARK 465 GLU A 18 REMARK 465 GLY A 19 REMARK 465 GLY A 96 REMARK 465 GLY A 97 REMARK 465 GLY B 3 REMARK 465 SER B 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS C 25 O HOH C 301 1.31 REMARK 500 HZ2 LYS A 25 O HOH A 101 1.47 REMARK 500 HZ1 LYS C 25 O HOH C 308 1.54 REMARK 500 O HOH A 151 O HOH A 159 1.86 REMARK 500 NZ LYS C 25 O HOH C 301 1.87 REMARK 500 O HOH A 213 O HOH A 222 1.88 REMARK 500 O HOH C 374 O HOH C 403 1.89 REMARK 500 O HOH C 301 O HOH C 399 1.89 REMARK 500 N LYS C 17 O HOH C 302 1.91 REMARK 500 O HOH C 370 O HOH C 375 1.92 REMARK 500 NZ LYS A 25 O HOH A 101 1.94 REMARK 500 O ASP B 15 O HOH B 101 1.96 REMARK 500 OD1 ASN C 74 O HOH C 303 1.96 REMARK 500 OE1 GLU C 67 O HOH C 304 1.98 REMARK 500 O HOH C 315 O HOH C 412 2.01 REMARK 500 O HOH C 430 O HOH C 433 2.02 REMARK 500 O HOH A 184 O HOH A 196 2.03 REMARK 500 O HOH C 310 O HOH C 365 2.12 REMARK 500 O HOH A 214 O HOH A 220 2.15 REMARK 500 O HOH A 194 O HOH A 215 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 413 O HOH D 110 3554 1.83 REMARK 500 O HOH A 103 O HOH A 154 4554 1.88 REMARK 500 O HOH C 401 O HOH B 125 2455 2.00 REMARK 500 O HOH C 347 O HOH C 366 3544 2.06 REMARK 500 O HOH C 319 O HOH C 369 3444 2.10 REMARK 500 O HOH A 105 O HOH A 131 4454 2.11 REMARK 500 O HOH A 186 O HOH A 200 4454 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER C 31 -3.04 83.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6V7P RELATED DB: PDB DBREF 6V7Q C 17 97 UNP P63165 SUMO1_HUMAN 17 97 DBREF 6V7Q D 3 15 PDB 6V7Q 6V7Q 3 15 DBREF 6V7Q A 17 97 UNP P63165 SUMO1_HUMAN 17 97 DBREF 6V7Q B 3 15 PDB 6V7Q 6V7Q 3 15 SEQADV 6V7Q GLY C 15 UNP P63165 EXPRESSION TAG SEQADV 6V7Q SER C 16 UNP P63165 EXPRESSION TAG SEQADV 6V7Q ALA C 52 UNP P63165 CYS 52 ENGINEERED MUTATION SEQADV 6V7Q GLY A 15 UNP P63165 EXPRESSION TAG SEQADV 6V7Q SER A 16 UNP P63165 EXPRESSION TAG SEQADV 6V7Q ALA A 52 UNP P63165 CYS 52 ENGINEERED MUTATION SEQRES 1 C 83 GLY SER LYS GLU GLY GLU TYR ILE LYS LEU LYS VAL ILE SEQRES 2 C 83 GLY GLN ASP SER SER GLU ILE HIS PHE LYS VAL LYS MET SEQRES 3 C 83 THR THR HIS LEU LYS LYS LEU LYS GLU SER TYR ALA GLN SEQRES 4 C 83 ARG GLN GLY VAL PRO MET ASN SER LEU ARG PHE LEU PHE SEQRES 5 C 83 GLU GLY GLN ARG ILE ALA ASP ASN HIS THR PRO LYS GLU SEQRES 6 C 83 LEU GLY MET GLU GLU GLU ASP VAL ILE GLU VAL TYR GLN SEQRES 7 C 83 GLU GLN THR GLY GLY SEQRES 1 D 13 GLY SER GLY GLU ALA GLU GLU ARG ILE ILE SEP LEU ASP SEQRES 1 A 83 GLY SER LYS GLU GLY GLU TYR ILE LYS LEU LYS VAL ILE SEQRES 2 A 83 GLY GLN ASP SER SER GLU ILE HIS PHE LYS VAL LYS MET SEQRES 3 A 83 THR THR HIS LEU LYS LYS LEU LYS GLU SER TYR ALA GLN SEQRES 4 A 83 ARG GLN GLY VAL PRO MET ASN SER LEU ARG PHE LEU PHE SEQRES 5 A 83 GLU GLY GLN ARG ILE ALA ASP ASN HIS THR PRO LYS GLU SEQRES 6 A 83 LEU GLY MET GLU GLU GLU ASP VAL ILE GLU VAL TYR GLN SEQRES 7 A 83 GLU GLN THR GLY GLY SEQRES 1 B 13 GLY SER GLY GLU ALA GLU GLU ARG ILE ILE SEP LEU ASP HET SEP D 13 14 HET SEP B 13 14 HETNAM SEP PHOSPHOSERINE HETSYN SEP PHOSPHONOSERINE FORMUL 2 SEP 2(C3 H8 N O6 P) FORMUL 5 HOH *308(H2 O) HELIX 1 AA1 LEU C 44 GLY C 56 1 13 HELIX 2 AA2 PRO C 58 ASN C 60 5 3 HELIX 3 AA3 THR C 76 GLY C 81 1 6 HELIX 4 AA4 LEU A 44 GLY A 56 1 13 HELIX 5 AA5 PRO A 58 ASN A 60 5 3 HELIX 6 AA6 THR A 76 GLY A 81 1 6 SHEET 1 AA1 6 GLN C 69 ARG C 70 0 SHEET 2 AA1 6 LEU C 62 PHE C 66 -1 N PHE C 66 O GLN C 69 SHEET 3 AA1 6 VAL C 87 GLN C 92 -1 O GLU C 89 N LEU C 65 SHEET 4 AA1 6 TYR C 21 ILE C 27 1 N ILE C 27 O ILE C 88 SHEET 5 AA1 6 GLU C 33 LYS C 39 -1 O ILE C 34 N VAL C 26 SHEET 6 AA1 6 ILE D 11 SEP D 13 1 O ILE D 12 N LYS C 37 SHEET 1 AA2 6 GLN A 69 ARG A 70 0 SHEET 2 AA2 6 LEU A 62 PHE A 66 -1 N PHE A 66 O GLN A 69 SHEET 3 AA2 6 VAL A 87 GLN A 92 -1 O GLU A 89 N LEU A 65 SHEET 4 AA2 6 TYR A 21 ILE A 27 1 N ILE A 27 O ILE A 88 SHEET 5 AA2 6 GLU A 33 LYS A 39 -1 O ILE A 34 N VAL A 26 SHEET 6 AA2 6 ILE B 11 SEP B 13 1 O ILE B 12 N HIS A 35 LINK C ILE D 12 N SEP D 13 1555 1555 1.33 LINK C SEP D 13 N LEU D 14 1555 1555 1.33 LINK C ILE B 12 N SEP B 13 1555 1555 1.33 LINK C SEP B 13 N LEU B 14 1555 1555 1.33 CRYST1 38.315 38.749 121.242 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026099 0.000000 0.000000 0.00000 SCALE2 0.000000 0.025807 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008248 0.00000