HEADER TRANSCRIPTION 10-DEC-19 6V89 TITLE HUMAN CTBP1 (28-375) IN COMPLEX WITH AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-TERMINAL-BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 28-375; COMPND 5 SYNONYM: CTBP1; COMPND 6 EC: 1.1.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CTBP1, CTBP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CO-TRANSCRIPTIONAL FACTOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR W.E.ROYER REVDAT 4 11-OCT-23 6V89 1 REMARK REVDAT 3 21-JUL-21 6V89 1 JRNL REVDAT 2 17-FEB-21 6V89 1 JRNL REVDAT 1 03-FEB-21 6V89 0 JRNL AUTH J.C.NICHOLS,C.A.SCHIFFER,W.E.ROYER JR. JRNL TITL NAD(H) PHOSPHATES MEDIATE TETRAMER ASSEMBLY OF HUMAN JRNL TITL 2 C-TERMINAL BINDING PROTEIN (CTBP). JRNL REF J.BIOL.CHEM. V. 296 00351 2021 JRNL REFN ESSN 1083-351X JRNL PMID 33524397 JRNL DOI 10.1016/J.JBC.2021.100351 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX V1.15 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 13660 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.1400 - 4.1900 0.98 2947 156 0.1862 0.2226 REMARK 3 2 4.1900 - 3.3200 0.93 2603 137 0.2412 0.2937 REMARK 3 3 3.3200 - 2.9000 0.98 2707 143 0.2668 0.2624 REMARK 3 4 2.9000 - 2.6400 0.96 2630 139 0.2948 0.3946 REMARK 3 5 2.6400 - 2.4500 0.77 2089 109 0.3011 0.3820 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.385 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.067 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2607 REMARK 3 ANGLE : 0.466 3557 REMARK 3 CHIRALITY : 0.039 420 REMARK 3 PLANARITY : 0.003 466 REMARK 3 DIHEDRAL : 7.232 2112 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 3.0507 32.2687 -26.4543 REMARK 3 T TENSOR REMARK 3 T11: 0.2583 T22: 0.3743 REMARK 3 T33: 0.3093 T12: 0.0010 REMARK 3 T13: 0.0082 T23: -0.0291 REMARK 3 L TENSOR REMARK 3 L11: 0.6410 L22: 0.6434 REMARK 3 L33: 1.0559 L12: -0.3152 REMARK 3 L13: 0.4194 L23: -0.3388 REMARK 3 S TENSOR REMARK 3 S11: 0.0408 S12: 0.0845 S13: -0.0249 REMARK 3 S21: -0.0744 S22: -0.0195 S23: -0.1363 REMARK 3 S31: 0.0816 S32: 0.2723 S33: 0.0053 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6V89 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1000245960. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : CU FINE FOCUS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13982 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.59700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 6CDF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, PH 7.5, 80-200 MM REMARK 280 CALCIUM CHLORIDE, 2-6% PEG400, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.57333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 109.14667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 54.57333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 109.14667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.57333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 109.14667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 54.57333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 109.14667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -44.47200 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 77.02776 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -54.57333 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 702 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 721 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 724 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 7 REMARK 465 GLY A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 SER A 17 REMARK 465 SER A 18 REMARK 465 GLY A 19 REMARK 465 LEU A 20 REMARK 465 VAL A 21 REMARK 465 PRO A 22 REMARK 465 ARG A 23 REMARK 465 GLY A 24 REMARK 465 SER A 25 REMARK 465 ALA A 358 REMARK 465 ALA A 359 REMARK 465 THR A 360 REMARK 465 HIS A 361 REMARK 465 TRP A 362 REMARK 465 ALA A 363 REMARK 465 SER A 364 REMARK 465 MET A 365 REMARK 465 ASP A 366 REMARK 465 PRO A 367 REMARK 465 ALA A 368 REMARK 465 VAL A 369 REMARK 465 VAL A 370 REMARK 465 HIS A 371 REMARK 465 PRO A 372 REMARK 465 GLU A 373 REMARK 465 LEU A 374 REMARK 465 ASN A 375 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 26 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 36 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 63 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 GLU A 84 CG CD OE1 OE2 REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 ARG A 155 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 241 CG CD OE1 OE2 REMARK 470 LYS A 253 CG CD CE NZ REMARK 470 LYS A 273 CG CD CE NZ REMARK 470 LYS A 305 CG CD CE NZ REMARK 470 ASP A 306 CG OD1 OD2 REMARK 470 ARG A 342 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 348 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET A 27 CA CB CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 651 O HOH A 672 2.03 REMARK 500 O HOH A 615 O HOH A 706 2.14 REMARK 500 O1P AMP A 501 O HOH A 601 2.16 REMARK 500 O HOH A 676 O HOH A 705 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 34 55.21 -106.03 REMARK 500 TYR A 76 -136.95 -102.61 REMARK 500 LEU A 113 4.45 -69.63 REMARK 500 LEU A 182 59.14 -98.56 REMARK 500 PRO A 205 6.01 -69.76 REMARK 500 ALA A 265 -83.93 -93.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 724 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 725 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A 726 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A 727 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 728 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH A 729 DISTANCE = 7.02 ANGSTROMS REMARK 525 HOH A 730 DISTANCE = 7.30 ANGSTROMS REMARK 525 HOH A 731 DISTANCE = 7.32 ANGSTROMS REMARK 525 HOH A 732 DISTANCE = 7.62 ANGSTROMS REMARK 525 HOH A 733 DISTANCE = 7.67 ANGSTROMS REMARK 525 HOH A 734 DISTANCE = 7.98 ANGSTROMS REMARK 525 HOH A 735 DISTANCE = 8.28 ANGSTROMS REMARK 525 HOH A 736 DISTANCE = 8.45 ANGSTROMS REMARK 525 HOH A 737 DISTANCE = 8.62 ANGSTROMS REMARK 525 HOH A 738 DISTANCE = 8.83 ANGSTROMS REMARK 525 HOH A 739 DISTANCE = 8.95 ANGSTROMS REMARK 525 HOH A 740 DISTANCE = 9.75 ANGSTROMS REMARK 525 HOH A 741 DISTANCE = 11.22 ANGSTROMS REMARK 525 HOH A 742 DISTANCE = 11.52 ANGSTROMS REMARK 525 HOH A 743 DISTANCE = 11.59 ANGSTROMS REMARK 525 HOH A 744 DISTANCE = 11.80 ANGSTROMS REMARK 525 HOH A 745 DISTANCE = 12.60 ANGSTROMS REMARK 525 HOH A 746 DISTANCE = 14.05 ANGSTROMS REMARK 525 HOH A 747 DISTANCE = 14.32 ANGSTROMS REMARK 525 HOH A 748 DISTANCE = 14.48 ANGSTROMS REMARK 525 HOH A 749 DISTANCE = 15.40 ANGSTROMS REMARK 525 HOH A 750 DISTANCE = 17.19 ANGSTROMS REMARK 525 HOH A 751 DISTANCE = 17.43 ANGSTROMS REMARK 525 HOH A 752 DISTANCE = 20.72 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 607 O REMARK 620 2 HOH A 620 O 135.6 REMARK 620 3 HOH A 651 O 83.2 129.9 REMARK 620 4 HOH A 657 O 67.3 75.0 104.6 REMARK 620 5 HOH A 672 O 114.9 86.2 44.2 88.8 REMARK 620 6 HOH A 713 O 81.1 77.4 150.6 92.1 162.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 504 DBREF 6V89 A 28 375 UNP Q13363 CTBP1_HUMAN 28 375 SEQADV 6V89 MET A 7 UNP Q13363 EXPRESSION TAG SEQADV 6V89 GLY A 8 UNP Q13363 EXPRESSION TAG SEQADV 6V89 SER A 9 UNP Q13363 EXPRESSION TAG SEQADV 6V89 SER A 10 UNP Q13363 EXPRESSION TAG SEQADV 6V89 HIS A 11 UNP Q13363 EXPRESSION TAG SEQADV 6V89 HIS A 12 UNP Q13363 EXPRESSION TAG SEQADV 6V89 HIS A 13 UNP Q13363 EXPRESSION TAG SEQADV 6V89 HIS A 14 UNP Q13363 EXPRESSION TAG SEQADV 6V89 HIS A 15 UNP Q13363 EXPRESSION TAG SEQADV 6V89 HIS A 16 UNP Q13363 EXPRESSION TAG SEQADV 6V89 SER A 17 UNP Q13363 EXPRESSION TAG SEQADV 6V89 SER A 18 UNP Q13363 EXPRESSION TAG SEQADV 6V89 GLY A 19 UNP Q13363 EXPRESSION TAG SEQADV 6V89 LEU A 20 UNP Q13363 EXPRESSION TAG SEQADV 6V89 VAL A 21 UNP Q13363 EXPRESSION TAG SEQADV 6V89 PRO A 22 UNP Q13363 EXPRESSION TAG SEQADV 6V89 ARG A 23 UNP Q13363 EXPRESSION TAG SEQADV 6V89 GLY A 24 UNP Q13363 EXPRESSION TAG SEQADV 6V89 SER A 25 UNP Q13363 EXPRESSION TAG SEQADV 6V89 HIS A 26 UNP Q13363 EXPRESSION TAG SEQADV 6V89 MET A 27 UNP Q13363 EXPRESSION TAG SEQRES 1 A 369 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 369 LEU VAL PRO ARG GLY SER HIS MET PRO LEU VAL ALA LEU SEQRES 3 A 369 LEU ASP GLY ARG ASP CYS THR VAL GLU MET PRO ILE LEU SEQRES 4 A 369 LYS ASP VAL ALA THR VAL ALA PHE CYS ASP ALA GLN SER SEQRES 5 A 369 THR GLN GLU ILE HIS GLU LYS VAL LEU ASN GLU ALA VAL SEQRES 6 A 369 GLY ALA LEU MET TYR HIS THR ILE THR LEU THR ARG GLU SEQRES 7 A 369 ASP LEU GLU LYS PHE LYS ALA LEU ARG ILE ILE VAL ARG SEQRES 8 A 369 ILE GLY SER GLY PHE ASP ASN ILE ASP ILE LYS SER ALA SEQRES 9 A 369 GLY ASP LEU GLY ILE ALA VAL CYS ASN VAL PRO ALA ALA SEQRES 10 A 369 SER VAL GLU GLU THR ALA ASP SER THR LEU CYS HIS ILE SEQRES 11 A 369 LEU ASN LEU TYR ARG ARG ALA THR TRP LEU HIS GLN ALA SEQRES 12 A 369 LEU ARG GLU GLY THR ARG VAL GLN SER VAL GLU GLN ILE SEQRES 13 A 369 ARG GLU VAL ALA SER GLY ALA ALA ARG ILE ARG GLY GLU SEQRES 14 A 369 THR LEU GLY ILE ILE GLY LEU GLY ARG VAL GLY GLN ALA SEQRES 15 A 369 VAL ALA LEU ARG ALA LYS ALA PHE GLY PHE ASN VAL LEU SEQRES 16 A 369 PHE TYR ASP PRO TYR LEU SER ASP GLY VAL GLU ARG ALA SEQRES 17 A 369 LEU GLY LEU GLN ARG VAL SER THR LEU GLN ASP LEU LEU SEQRES 18 A 369 PHE HIS SER ASP CYS VAL THR LEU HIS CYS GLY LEU ASN SEQRES 19 A 369 GLU HIS ASN HIS HIS LEU ILE ASN ASP PHE THR VAL LYS SEQRES 20 A 369 GLN MET ARG GLN GLY ALA PHE LEU VAL ASN THR ALA ARG SEQRES 21 A 369 GLY GLY LEU VAL ASP GLU LYS ALA LEU ALA GLN ALA LEU SEQRES 22 A 369 LYS GLU GLY ARG ILE ARG GLY ALA ALA LEU ASP VAL HIS SEQRES 23 A 369 GLU SER GLU PRO PHE SER PHE SER GLN GLY PRO LEU LYS SEQRES 24 A 369 ASP ALA PRO ASN LEU ILE CYS THR PRO HIS ALA ALA TRP SEQRES 25 A 369 TYR SER GLU GLN ALA SER ILE GLU MET ARG GLU GLU ALA SEQRES 26 A 369 ALA ARG GLU ILE ARG ARG ALA ILE THR GLY ARG ILE PRO SEQRES 27 A 369 ASP SER LEU LYS ASN CYS VAL ASN LYS ASP HIS LEU THR SEQRES 28 A 369 ALA ALA THR HIS TRP ALA SER MET ASP PRO ALA VAL VAL SEQRES 29 A 369 HIS PRO GLU LEU ASN HET AMP A 501 35 HET CL A 502 1 HET CL A 503 1 HET CA A 504 1 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION FORMUL 2 AMP C10 H14 N5 O7 P FORMUL 3 CL 2(CL 1-) FORMUL 5 CA CA 2+ FORMUL 6 HOH *152(H2 O) HELIX 1 AA1 GLU A 41 LYS A 46 1 6 HELIX 2 AA2 SER A 58 ILE A 62 5 5 HELIX 3 AA3 HIS A 63 GLU A 69 1 7 HELIX 4 AA4 THR A 82 LYS A 88 1 7 HELIX 5 AA5 ASP A 106 LEU A 113 1 8 HELIX 6 AA6 SER A 124 ARG A 142 1 19 HELIX 7 AA7 ARG A 142 GLU A 152 1 11 HELIX 8 AA8 SER A 158 ALA A 166 1 9 HELIX 9 AA9 GLY A 183 ALA A 195 1 13 HELIX 10 AB1 GLY A 210 GLY A 216 1 7 HELIX 11 AB2 THR A 222 SER A 230 1 9 HELIX 12 AB3 ASN A 248 LYS A 253 1 6 HELIX 13 AB4 ARG A 266 VAL A 270 5 5 HELIX 14 AB5 ASP A 271 GLU A 281 1 11 HELIX 15 AB6 SER A 320 GLY A 341 1 22 SHEET 1 AA1 5 THR A 50 PHE A 53 0 SHEET 2 AA1 5 LEU A 29 LEU A 32 1 N LEU A 32 O ALA A 52 SHEET 3 AA1 5 ALA A 70 MET A 75 1 O VAL A 71 N LEU A 29 SHEET 4 AA1 5 ILE A 94 ARG A 97 1 O VAL A 96 N ALA A 73 SHEET 5 AA1 5 ALA A 116 CYS A 118 1 O CYS A 118 N ARG A 97 SHEET 1 AA2 7 GLN A 218 ARG A 219 0 SHEET 2 AA2 7 ASN A 199 TYR A 203 1 N VAL A 200 O GLN A 218 SHEET 3 AA2 7 THR A 176 ILE A 180 1 N ILE A 179 O LEU A 201 SHEET 4 AA2 7 CYS A 232 LEU A 235 1 O CYS A 232 N GLY A 178 SHEET 5 AA2 7 ALA A 259 ASN A 263 1 O PHE A 260 N VAL A 233 SHEET 6 AA2 7 ILE A 284 LEU A 289 1 O ALA A 288 N LEU A 261 SHEET 7 AA2 7 LEU A 310 CYS A 312 1 O ILE A 311 N LEU A 289 LINK CA CA A 504 O HOH A 607 1555 1555 2.65 LINK CA CA A 504 O HOH A 620 1555 1555 2.54 LINK CA CA A 504 O HOH A 651 1555 1555 2.69 LINK CA CA A 504 O HOH A 657 1555 1555 2.74 LINK CA CA A 504 O HOH A 672 1555 1555 2.71 LINK CA CA A 504 O HOH A 713 1555 1555 2.38 CISPEP 1 GLU A 295 PRO A 296 0 2.84 CISPEP 2 ILE A 343 PRO A 344 0 -2.73 SITE 1 AC1 12 GLY A 181 GLY A 183 ARG A 184 TYR A 203 SITE 2 AC1 12 ASP A 204 PRO A 205 TYR A 206 CYS A 237 SITE 3 AC1 12 ASN A 240 ASN A 243 HOH A 601 HOH A 610 SITE 1 AC2 2 SER A 324 ARG A 328 SITE 1 AC3 4 ALA A 170 ARG A 171 GLU A 321 GLN A 322 SITE 1 AC4 6 HOH A 607 HOH A 620 HOH A 651 HOH A 657 SITE 2 AC4 6 HOH A 672 HOH A 713 CRYST1 88.944 88.944 163.720 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011243 0.006491 0.000000 0.00000 SCALE2 0.000000 0.012982 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006108 0.00000