HEADER DNA BINDING PROTEIN 18-DEC-19 6VBH TITLE HUMAN XPG ENDONUCLEASE CATALYTIC DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS,FLAP COMPND 3 ENDONUCLEASE 1; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: DNA EXCISION REPAIR PROTEIN ERCC-5,XERODERMA PIGMENTOSUM COMPND 6 GROUP G-COMPLEMENTING PROTEIN,FEN-1,FLAP STRUCTURE-SPECIFIC COMPND 7 ENDONUCLEASE 1; COMPND 8 EC: 3.1.-.-; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: THE HUMAN CATALYTIC DOMAIN WAS CLONED WITH RESIDUES 79 COMPND 11 TO 785 REPLACED WITH RESIDUES 89 TO 128 FROM P. FURIOSUS FEN AND WITH COMPND 12 A C-TERMINAL TRUNCATION AFTER RESIDUE 987. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606, 2261; SOURCE 5 GENE: ERCC5, ERCM2, XPG, XPGC, FEN, FEN-1, PF1414; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2 DE3 KEYWDS METALLOPROTEIN, REPLICATION, DNA DAMAGE, DNA REPAIR, NUCLOETIDE KEYWDS 2 EXCISION REPAIR, XPG, XERODERMA PIGMENTOSUM, 5' NUCLEASE, HYDROLASE- KEYWDS 3 DNA COMPLEX, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.E.TSUTAKAWA,A.S.ARVAI,J.A.TAINER REVDAT 3 11-OCT-23 6VBH 1 REMARK REVDAT 2 08-JUL-20 6VBH 1 JRNL REVDAT 1 17-JUN-20 6VBH 0 JRNL AUTH S.E.TSUTAKAWA,A.H.SARKER,C.NG,A.S.ARVAI,D.S.SHIN,B.SHIH, JRNL AUTH 2 S.JIANG,A.C.THWIN,M.S.TSAI,A.WILLCOX,M.Z.HER,K.S.TREGO, JRNL AUTH 3 A.G.RAETZ,D.ROSENBERG,A.BACOLLA,M.HAMMEL,J.D.GRIFFITH, JRNL AUTH 4 P.K.COOPER,J.A.TAINER JRNL TITL HUMAN XPG NUCLEASE STRUCTURE, ASSEMBLY, AND ACTIVITIES WITH JRNL TITL 2 INSIGHTS FOR NEURODEGENERATION AND CANCER FROM PATHOGENIC JRNL TITL 3 MUTATIONS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 14127 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 32522879 JRNL DOI 10.1073/PNAS.1921311117 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX PHENIX-DEV 2722 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.6 REMARK 3 NUMBER OF REFLECTIONS : 32323 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1602 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.8300 - 4.4363 1.00 3553 188 0.2093 0.2238 REMARK 3 2 4.4363 - 3.5217 1.00 3424 181 0.1950 0.1996 REMARK 3 3 3.5217 - 3.0767 0.99 3367 177 0.2229 0.2740 REMARK 3 4 3.0767 - 2.7954 0.95 3203 168 0.2403 0.3004 REMARK 3 5 2.7954 - 2.5951 0.90 3032 158 0.2371 0.2707 REMARK 3 6 2.5951 - 2.4421 0.83 2788 147 0.2298 0.2722 REMARK 3 7 2.4421 - 2.3198 0.79 2630 139 0.2361 0.2646 REMARK 3 8 2.3198 - 2.2188 0.73 2473 122 0.2600 0.3232 REMARK 3 9 2.2188 - 2.1334 0.70 2323 121 0.2809 0.3898 REMARK 3 10 2.1334 - 2.0598 0.65 2159 111 0.3206 0.3759 REMARK 3 11 2.0598 - 1.9954 0.53 1769 90 0.3349 0.3568 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2821 REMARK 3 ANGLE : 1.249 3824 REMARK 3 CHIRALITY : 0.062 395 REMARK 3 PLANARITY : 0.008 486 REMARK 3 DIHEDRAL : 9.051 1661 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VBH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1000246102. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-10; 24-JUL-10; 24-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100; 100; 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y; Y REMARK 200 RADIATION SOURCE : ALS; SSRL; SSRL REMARK 200 BEAMLINE : 12.3.1; BL11-1; BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.115953; 1.1; 1.1 REMARK 200 MONOCHROMATOR : NULL; NULL; NULL REMARK 200 OPTICS : NULL; NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; MARMOSAIC 325 REMARK 200 MM CCD; MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36003 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.995 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.72500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH; SINGLE REMARK 200 WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3Q8K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MIXED 1:1 WITH 40% AMSO4, 200 MM REMARK 280 IMIDIZOLE/MALATE BUFFER PH 4.2,100 MM MGCL2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 288K. MIXED 1:1 WIT 24% AMSO4, 200 MM REMARK 280 IMIDIZOLE/MALATE BUFFER PH 4.2, 250 MM MGCL2, 0.5 MM SMSO4, 10 REMARK 280 MM DTT, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 288K. MIXED 1: REMARK 280 1 WITH 32% AMSO4, 10 MM DTT, 200 MM IMIDIZOLE/MALATE BUFFER PH REMARK 280 4.2, AND 50 MM MGCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.80400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.80400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.21900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 86.70150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.21900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 86.70150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.80400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.21900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 86.70150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 50.80400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.21900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 86.70150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -385.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 173.40300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 39 REMARK 465 LYS A 40 REMARK 465 GLY A 41 REMARK 465 VAL A 42 REMARK 465 ARG A 43 REMARK 465 ASP A 44 REMARK 465 ARG A 45 REMARK 465 HIS A 46 REMARK 465 GLY A 47 REMARK 465 ASN A 48 REMARK 465 SER A 49 REMARK 465 ILE A 50 REMARK 465 PRO A 903 REMARK 465 LYS A 904 REMARK 465 ILE A 905 REMARK 465 ARG A 906 REMARK 465 PRO A 907 REMARK 465 ASN A 908 REMARK 465 PRO A 909 REMARK 465 HIS A 910 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 788 -105.35 -130.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1011 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1012 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1013 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1014 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1015 DBREF 6VBH A 2 85 UNP P28715 ERCC5_HUMAN 2 85 DBREF 6VBH A 89 128 UNP O93634 FEN_PYRFU 89 128 DBREF 6VBH A 766 987 UNP P28715 ERCC5_HUMAN 766 987 SEQRES 1 A 346 GLY VAL GLN GLY LEU TRP LYS LEU LEU GLU CYS SER GLY SEQRES 2 A 346 ARG GLN VAL SER PRO GLU ALA LEU GLU GLY LYS ILE LEU SEQRES 3 A 346 ALA VAL ASP ILE SER ILE TRP LEU ASN GLN ALA LEU LYS SEQRES 4 A 346 GLY VAL ARG ASP ARG HIS GLY ASN SER ILE GLU ASN PRO SEQRES 5 A 346 HIS LEU LEU THR LEU PHE HIS ARG LEU CYS LYS LEU LEU SEQRES 6 A 346 PHE PHE ARG ILE ARG PRO ILE PHE VAL PHE ASP GLY ASP SEQRES 7 A 346 ALA PRO LEU LEU LYS LYS LYS GLU LEU GLU LYS ARG ARG SEQRES 8 A 346 GLU ALA ARG GLU GLU ALA GLU GLU LYS TRP ARG GLU ALA SEQRES 9 A 346 LEU GLU LYS GLY GLU ILE GLU GLU ALA ARG LYS TYR ALA SEQRES 10 A 346 GLN ARG ALA THR ARG VAL ASN GLY GLN MET PHE LEU GLU SEQRES 11 A 346 SER GLN GLU LEU LEU ARG LEU PHE GLY ILE PRO TYR ILE SEQRES 12 A 346 GLN ALA PRO MET GLU ALA GLU ALA GLN CYS ALA ILE LEU SEQRES 13 A 346 ASP LEU THR ASP GLN THR SER GLY THR ILE THR ASP ASP SEQRES 14 A 346 SER ASP ILE TRP LEU PHE GLY ALA ARG HIS VAL TYR ARG SEQRES 15 A 346 ASN PHE PHE ASN LYS ASN LYS PHE VAL GLU TYR TYR GLN SEQRES 16 A 346 TYR VAL ASP PHE HIS ASN GLN LEU GLY LEU ASP ARG ASN SEQRES 17 A 346 LYS LEU ILE ASN LEU ALA TYR LEU LEU GLY SER ASP TYR SEQRES 18 A 346 THR GLU GLY ILE PRO THR VAL GLY CYS VAL THR ALA MET SEQRES 19 A 346 GLU ILE LEU ASN GLU PHE PRO GLY HIS GLY LEU GLU PRO SEQRES 20 A 346 LEU LEU LYS PHE SER GLU TRP TRP HIS GLU ALA GLN LYS SEQRES 21 A 346 ASN PRO LYS ILE ARG PRO ASN PRO HIS ASP THR LYS VAL SEQRES 22 A 346 LYS LYS LYS LEU ARG THR LEU GLN LEU THR PRO GLY PHE SEQRES 23 A 346 PRO ASN PRO ALA VAL ALA GLU ALA TYR LEU LYS PRO VAL SEQRES 24 A 346 VAL ASP ASP SER LYS GLY SER PHE LEU TRP GLY LYS PRO SEQRES 25 A 346 ASP LEU ASP LYS ILE ARG GLU PHE CYS GLN ARG TYR PHE SEQRES 26 A 346 GLY TRP ASN ARG THR LYS THR ASP GLU SER LEU PHE PRO SEQRES 27 A 346 VAL LEU LYS GLN LEU ASP ALA GLN HET SO4 A1001 5 HET SO4 A1002 5 HET SO4 A1003 5 HET SO4 A1004 5 HET SO4 A1005 5 HET SO4 A1006 5 HET SO4 A1007 5 HET SO4 A1008 5 HET SO4 A1009 5 HET SO4 A1010 5 HET SO4 A1011 5 HET SO4 A1012 5 HET SO4 A1013 5 HET SO4 A1014 5 HET SO4 A1015 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 15(O4 S 2-) FORMUL 17 HOH *119(H2 O) HELIX 1 AA1 GLY A 5 GLU A 11 1 7 HELIX 2 AA2 CYS A 12 GLY A 14 5 3 HELIX 3 AA3 SER A 18 GLU A 23 5 6 HELIX 4 AA4 ILE A 31 ASN A 36 1 6 HELIX 5 AA5 ASN A 52 PHE A 68 1 17 HELIX 6 AA6 LYS A 89 ARG A 94 1 6 HELIX 7 AA7 GLU A 100 GLY A 112 1 13 HELIX 8 AA8 ASN A 128 GLY A 780 1 16 HELIX 9 AA9 GLU A 789 THR A 800 1 12 HELIX 10 AB1 SER A 811 PHE A 816 1 6 HELIX 11 AB2 TYR A 837 GLY A 845 1 9 HELIX 12 AB3 ASP A 847 GLY A 859 1 13 HELIX 13 AB4 GLY A 870 PHE A 881 1 12 HELIX 14 AB5 LEU A 886 ASN A 902 1 17 HELIX 15 AB6 THR A 912 THR A 920 1 9 HELIX 16 AB7 ASN A 929 LYS A 938 1 10 HELIX 17 AB8 ASP A 954 GLY A 967 1 14 HELIX 18 AB9 ASN A 969 ALA A 986 1 18 SHEET 1 AA1 7 ARG A 15 VAL A 17 0 SHEET 2 AA1 7 VAL A 832 GLN A 836 -1 O TYR A 834 N ARG A 15 SHEET 3 AA1 7 HIS A 820 ARG A 823 -1 N ARG A 823 O GLU A 833 SHEET 4 AA1 7 THR A 806 ILE A 807 1 N THR A 806 O TYR A 822 SHEET 5 AA1 7 ILE A 26 ASP A 30 1 N ALA A 28 O ILE A 807 SHEET 6 AA1 7 ARG A 71 PHE A 76 1 O VAL A 75 N VAL A 29 SHEET 7 AA1 7 TYR A 783 GLN A 785 1 O ILE A 784 N PHE A 74 CISPEP 1 PHE A 927 PRO A 928 0 4.16 SITE 1 AC1 5 ASP A 847 ASN A 849 LYS A 850 HIS A 884 SITE 2 AC1 5 GLY A 885 SITE 1 AC2 6 GLN A 4 GLY A 5 LYS A 8 GLY A 870 SITE 2 AC2 6 CYS A 871 HOH A1136 SITE 1 AC3 3 LYS A 952 ARG A 970 HOH A1102 SITE 1 AC4 7 LEU A 83 LYS A 85 THR A 863 GLU A 864 SITE 2 AC4 7 HOH A1128 HOH A1134 HOH A1152 SITE 1 AC5 3 ARG A 819 TYR A 837 HOH A1122 SITE 1 AC6 4 TRP A 34 GLN A 37 HIS A 54 THR A 57 SITE 1 AC7 3 TRP A 895 ASP A 911 ARG A 919 SITE 1 AC8 5 PRO A 867 THR A 868 VAL A 869 HOH A1110 SITE 2 AC8 5 HOH A1132 SITE 1 AC9 5 PRO A 782 TYR A 783 THR A 912 HOH A1143 SITE 2 AC9 5 HOH A1167 SITE 1 AD1 2 ARG A 970 HOH A1150 SITE 1 AD2 3 THR A 57 HIS A 60 HOH A1141 SITE 1 AD3 4 LEU A 66 TRP A 950 GLY A 951 HOH A1176 SITE 1 AD4 3 ARG A 94 ARG A 98 ARG A 126 SITE 1 AD5 4 ARG A 98 ARG A 126 GLY A 845 HOH A1130 SITE 1 AD6 1 ARG A 777 CRYST1 64.438 173.403 101.608 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015519 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005767 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009842 0.00000