HEADER HYDROLASE 19-DEC-19 6VBK TITLE CRYSTAL STRUCTURE OF N-TERMINAL DOMAIN OF MYCOBACTERIUM TUBERCULOSIS TITLE 2 COMPLEX LON PROTEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LON211; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS LON PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.K.BI,C.CHEN,X.Y.CHEN,C.Y.GUO,D.H.LIN REVDAT 2 11-OCT-23 6VBK 1 REMARK REVDAT 1 23-DEC-20 6VBK 0 JRNL AUTH X.CHEN,S.ZHANG,F.BI,C.GUO,L.FENG,H.WANG,H.YAO,D.LIN JRNL TITL CRYSTAL STRUCTURE OF THE N DOMAIN OF LON PROTEASE FROM JRNL TITL 2 MYCOBACTERIUM AVIUM COMPLEX. JRNL REF PROTEIN SCI. V. 28 1720 2019 JRNL REFN ESSN 1469-896X JRNL PMID 31306520 JRNL DOI 10.1002/PRO.3687 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 68 352 2012 REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 22505256 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 1 REFERENCE 2 REMARK 1 AUTH P.D.ADAMS,P.V.AFONINE,G.BUNKOCZI,V.B.CHEN,I.W.DAVIS, REMARK 1 AUTH 2 N.ECHOLS,J.J.HEADD,L.W.HUNG,G.J.KAPRAL,R.W.GROSSE-KUNSTLEVE, REMARK 1 AUTH 3 A.J.MCCOY,N.W.MORIARTY,R.OEFFNER,R.J.READ,D.C.RICHARDSON, REMARK 1 AUTH 4 J.S.RICHARDSON,T.C.TERWILLIGER,P.H.ZWART REMARK 1 TITL PHENIX: A COMPREHENSIVE PYTHON-BASED SYSTEM FOR REMARK 1 TITL 2 MACROMOLECULAR STRUCTURE SOLUTION. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 66 213 2010 REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 20124702 REMARK 1 DOI 10.1107/S0907444909052925 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 27489 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1390 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 5.4300 - 4.3000 0.98 2640 154 0.1700 0.2087 REMARK 3 2 4.3000 - 3.4100 1.00 2645 139 0.1804 0.2022 REMARK 3 3 3.4100 - 2.9800 0.99 2575 157 0.2111 0.2589 REMARK 3 4 2.9800 - 2.7100 1.00 2634 151 0.2432 0.2816 REMARK 3 5 2.7100 - 2.5200 1.00 2611 152 0.2452 0.3207 REMARK 3 6 2.5200 - 2.3700 0.98 2583 138 0.2622 0.3068 REMARK 3 7 2.3700 - 2.2500 1.00 2621 145 0.2665 0.3150 REMARK 3 8 2.2500 - 2.1500 1.00 2627 125 0.2646 0.2931 REMARK 3 9 2.1500 - 2.0700 1.00 2668 122 0.2732 0.3195 REMARK 3 10 2.0700 - 2.0000 0.95 2495 107 0.3020 0.3492 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.284 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3169 REMARK 3 ANGLE : 0.797 4319 REMARK 3 CHIRALITY : 0.055 514 REMARK 3 PLANARITY : 0.004 569 REMARK 3 DIHEDRAL : 20.276 1186 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7914 16.7766 -24.8162 REMARK 3 T TENSOR REMARK 3 T11: 0.5370 T22: 0.5836 REMARK 3 T33: 0.7794 T12: -0.1068 REMARK 3 T13: 0.0699 T23: -0.1778 REMARK 3 L TENSOR REMARK 3 L11: 3.6573 L22: 0.6876 REMARK 3 L33: 1.8241 L12: -1.3047 REMARK 3 L13: 0.7369 L23: -0.9544 REMARK 3 S TENSOR REMARK 3 S11: -0.1676 S12: 0.5314 S13: 0.4395 REMARK 3 S21: -0.3104 S22: 0.0727 S23: -0.5916 REMARK 3 S31: -0.5696 S32: 0.3749 S33: 0.5351 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9204 4.5032 -21.9239 REMARK 3 T TENSOR REMARK 3 T11: 0.5448 T22: 0.4854 REMARK 3 T33: 0.6836 T12: 0.0136 REMARK 3 T13: 0.0114 T23: -0.0823 REMARK 3 L TENSOR REMARK 3 L11: 5.6318 L22: 5.0097 REMARK 3 L33: 3.2726 L12: -1.1154 REMARK 3 L13: -3.7898 L23: -1.0186 REMARK 3 S TENSOR REMARK 3 S11: -0.3207 S12: -0.4588 S13: -0.3264 REMARK 3 S21: 0.2171 S22: -0.1926 S23: -0.9728 REMARK 3 S31: 0.6369 S32: 0.3641 S33: 0.2775 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9805 17.3122 -26.0541 REMARK 3 T TENSOR REMARK 3 T11: 0.3992 T22: 0.3757 REMARK 3 T33: 0.3715 T12: -0.0193 REMARK 3 T13: -0.0038 T23: -0.0949 REMARK 3 L TENSOR REMARK 3 L11: 2.4420 L22: 2.5659 REMARK 3 L33: 2.4497 L12: -1.4077 REMARK 3 L13: -0.0237 L23: 0.1024 REMARK 3 S TENSOR REMARK 3 S11: 0.0681 S12: 0.3538 S13: -0.0218 REMARK 3 S21: -0.2037 S22: 0.0187 S23: -0.2412 REMARK 3 S31: -0.3189 S32: 0.0256 S33: -0.1223 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.9444 29.3617 7.6779 REMARK 3 T TENSOR REMARK 3 T11: 0.4962 T22: 0.3709 REMARK 3 T33: 0.5732 T12: 0.0583 REMARK 3 T13: 0.0157 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 1.2448 L22: -0.0345 REMARK 3 L33: 4.1565 L12: 0.0661 REMARK 3 L13: -0.0362 L23: 0.2452 REMARK 3 S TENSOR REMARK 3 S11: -0.3654 S12: 0.0962 S13: 0.1392 REMARK 3 S21: 0.1063 S22: -0.1108 S23: -0.0624 REMARK 3 S31: 0.3817 S32: 0.2039 S33: 0.4981 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 29 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): -49.4410 24.1121 -7.2151 REMARK 3 T TENSOR REMARK 3 T11: 0.4424 T22: 0.6174 REMARK 3 T33: 0.5681 T12: -0.0386 REMARK 3 T13: -0.0310 T23: -0.2003 REMARK 3 L TENSOR REMARK 3 L11: 4.3920 L22: 3.6486 REMARK 3 L33: 4.1975 L12: -1.0741 REMARK 3 L13: -0.1726 L23: 1.6953 REMARK 3 S TENSOR REMARK 3 S11: -0.7039 S12: -0.1106 S13: -0.0831 REMARK 3 S21: -0.1127 S22: -0.1641 S23: 1.4375 REMARK 3 S31: 0.5337 S32: -1.6290 S33: 0.6205 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.2420 42.7253 -9.8743 REMARK 3 T TENSOR REMARK 3 T11: 1.3085 T22: 0.8698 REMARK 3 T33: 0.7844 T12: 0.1587 REMARK 3 T13: 0.2691 T23: 0.1283 REMARK 3 L TENSOR REMARK 3 L11: 0.1611 L22: 8.7441 REMARK 3 L33: 0.9972 L12: -0.2139 REMARK 3 L13: 0.1402 L23: -2.7589 REMARK 3 S TENSOR REMARK 3 S11: 0.4170 S12: 0.2530 S13: 1.0712 REMARK 3 S21: 0.0925 S22: 0.4177 S23: 0.0579 REMARK 3 S31: -2.0487 S32: -0.8494 S33: -0.8684 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 65 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.2257 19.3719 5.1491 REMARK 3 T TENSOR REMARK 3 T11: 0.9234 T22: 0.8989 REMARK 3 T33: 0.5734 T12: -0.0341 REMARK 3 T13: 0.2308 T23: 0.0359 REMARK 3 L TENSOR REMARK 3 L11: 6.3626 L22: 9.4002 REMARK 3 L33: 4.7743 L12: -2.3547 REMARK 3 L13: 2.4231 L23: -6.6256 REMARK 3 S TENSOR REMARK 3 S11: -0.3435 S12: -1.5113 S13: -1.2805 REMARK 3 S21: 0.9590 S22: -0.3936 S23: 0.0851 REMARK 3 S31: 0.2195 S32: -0.4720 S33: 0.9002 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 79 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.5804 26.5046 -1.1293 REMARK 3 T TENSOR REMARK 3 T11: 0.4727 T22: 0.6033 REMARK 3 T33: 0.3904 T12: 0.0570 REMARK 3 T13: 0.0084 T23: -0.0327 REMARK 3 L TENSOR REMARK 3 L11: 5.2538 L22: 3.8068 REMARK 3 L33: 2.9769 L12: -1.6074 REMARK 3 L13: -0.8252 L23: 1.3163 REMARK 3 S TENSOR REMARK 3 S11: -0.4790 S12: -0.8230 S13: 0.1708 REMARK 3 S21: 0.4068 S22: 0.1228 S23: 0.3756 REMARK 3 S31: -0.1564 S32: 0.0471 S33: 0.3008 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 133 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.5973 13.3385 -5.5072 REMARK 3 T TENSOR REMARK 3 T11: 0.4821 T22: 0.5436 REMARK 3 T33: 0.4989 T12: 0.1618 REMARK 3 T13: 0.0121 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 5.1665 L22: 6.1779 REMARK 3 L33: 4.6115 L12: -2.9312 REMARK 3 L13: 0.4123 L23: 0.5860 REMARK 3 S TENSOR REMARK 3 S11: -0.6884 S12: -0.9587 S13: -0.4640 REMARK 3 S21: 0.9476 S22: 0.8999 S23: -0.5449 REMARK 3 S31: 0.1844 S32: 0.6796 S33: -0.0991 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 178 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.2844 12.4761 4.4023 REMARK 3 T TENSOR REMARK 3 T11: 1.1389 T22: 1.0585 REMARK 3 T33: 0.7366 T12: 0.3999 REMARK 3 T13: 0.3635 T23: 0.4577 REMARK 3 L TENSOR REMARK 3 L11: 2.8636 L22: 3.1924 REMARK 3 L33: 0.9641 L12: -2.2403 REMARK 3 L13: -0.6639 L23: -0.5393 REMARK 3 S TENSOR REMARK 3 S11: -1.0758 S12: -1.5919 S13: -0.6152 REMARK 3 S21: 1.6707 S22: 1.0249 S23: 0.1522 REMARK 3 S31: 0.1085 S32: -0.0950 S33: 0.1218 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 195 THROUGH 210 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.2170 9.6757 5.0135 REMARK 3 T TENSOR REMARK 3 T11: 1.0867 T22: 1.0570 REMARK 3 T33: 0.7877 T12: 0.4212 REMARK 3 T13: 0.0934 T23: 0.4275 REMARK 3 L TENSOR REMARK 3 L11: 4.3679 L22: 4.8392 REMARK 3 L33: 3.2951 L12: -2.8366 REMARK 3 L13: -0.5103 L23: 1.0144 REMARK 3 S TENSOR REMARK 3 S11: -0.7499 S12: -1.8623 S13: -1.0212 REMARK 3 S21: 2.0747 S22: 0.7030 S23: -0.1129 REMARK 3 S31: 0.2780 S32: -0.0685 S33: 0.0018 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VBK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1000246121. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6-4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97891 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27491 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.997 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 1344.000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 6IHG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, CITRIC ACID, PH 4.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.72700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -50.34400 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -38.72700 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 57 REMARK 465 ILE A 58 REMARK 465 ARG A 59 REMARK 465 SER A 60 REMARK 465 ALA B 211 REMARK 465 GLU B 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 10 OE1 GLU A 127 1.56 REMARK 500 O ASP B 21 O HOH B 301 1.88 REMARK 500 CB PRO B 168 O HOH B 315 2.03 REMARK 500 CD1 LEU A 91 O HOH A 428 2.05 REMARK 500 CD1 LEU B 199 O HOH B 315 2.05 REMARK 500 CA GLU A 5 O HOH A 413 2.08 REMARK 500 CB GLU B 191 O HOH B 396 2.12 REMARK 500 O HOH A 433 O HOH A 495 2.13 REMARK 500 O HOH A 455 O HOH A 475 2.14 REMARK 500 C GLY B 80 O HOH B 331 2.14 REMARK 500 O HOH B 319 O HOH B 387 2.18 REMARK 500 O HOH B 345 O HOH B 356 2.18 REMARK 500 O HOH A 449 O HOH A 486 2.18 REMARK 500 CB ALA A 51 O HOH A 419 2.19 REMARK 500 O HOH B 363 O HOH B 382 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO B 70 N PRO B 70 CA 0.227 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 70 C - N - CA ANGL. DEV. = 19.4 DEGREES REMARK 500 PRO B 70 CA - N - CD ANGL. DEV. = -11.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 4 86.73 54.91 REMARK 500 GLN A 87 147.83 -170.95 REMARK 500 PRO B 70 96.06 -65.13 REMARK 500 VAL B 103 -60.57 -104.47 REMARK 500 ALA B 128 78.21 -112.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 DBREF 6VBK A 1 212 PDB 6VBK 6VBK 1 212 DBREF 6VBK B 1 212 PDB 6VBK 6VBK 1 212 SEQRES 1 A 212 ALA MET ASP LEU GLU LEU SER MET SER GLU THR LEU THR SEQRES 2 A 212 LEU PRO VAL LEU PRO LEU GLU ASP GLY VAL VAL LEU PRO SEQRES 3 A 212 GLY MET VAL VAL PRO LEU ASP LEU SER GLU ASN GLY GLU SEQRES 4 A 212 VAL ARG ALA ALA ILE GLU ALA ALA ARG ALA ALA ALA GLN SEQRES 5 A 212 SER ARG GLY PRO GLY ILE ARG SER VAL SER LYS PRO ARG SEQRES 6 A 212 VAL LEU LEU VAL PRO ARG LEU ASN GLY ARG TYR ALA ASP SEQRES 7 A 212 VAL GLY THR LEU GLY VAL ILE GLU GLN GLU GLY ARG LEU SEQRES 8 A 212 PRO GLY GLY GLU PRO GLY ALA VAL VAL ARG GLY VAL SER SEQRES 9 A 212 ARG VAL ARG ILE GLY THR GLY THR THR GLY PRO GLY ALA SEQRES 10 A 212 ALA LEU TRP VAL GLU GLY THR VAL LEU GLU ALA PRO PRO SEQRES 11 A 212 ALA SER GLY ARG ALA GLN GLU LEU ALA LYS GLU TYR LYS SEQRES 12 A 212 GLY LEU VAL SER ALA ILE LEU GLN LYS ARG GLY ALA TRP SEQRES 13 A 212 GLN VAL VAL ASP VAL VAL GLN GLN ILE ASP ASP PRO SER SEQRES 14 A 212 THR LEU ALA ASP ASN SER GLY TYR ALA PRO TYR LEU THR SEQRES 15 A 212 ASP GLU GLN LYS ILE GLU VAL LEU GLU THR VAL ASP VAL SEQRES 16 A 212 VAL GLU ARG LEU GLU LEU VAL ILE GLY TRP THR ARG ASP SEQRES 17 A 212 HIS LEU ALA GLU SEQRES 1 B 212 ALA MET ASP LEU GLU LEU SER MET SER GLU THR LEU THR SEQRES 2 B 212 LEU PRO VAL LEU PRO LEU GLU ASP GLY VAL VAL LEU PRO SEQRES 3 B 212 GLY MET VAL VAL PRO LEU ASP LEU SER GLU ASN GLY GLU SEQRES 4 B 212 VAL ARG ALA ALA ILE GLU ALA ALA ARG ALA ALA ALA GLN SEQRES 5 B 212 SER ARG GLY PRO GLY ILE ARG SER VAL SER LYS PRO ARG SEQRES 6 B 212 VAL LEU LEU VAL PRO ARG LEU ASN GLY ARG TYR ALA ASP SEQRES 7 B 212 VAL GLY THR LEU GLY VAL ILE GLU GLN GLU GLY ARG LEU SEQRES 8 B 212 PRO GLY GLY GLU PRO GLY ALA VAL VAL ARG GLY VAL SER SEQRES 9 B 212 ARG VAL ARG ILE GLY THR GLY THR THR GLY PRO GLY ALA SEQRES 10 B 212 ALA LEU TRP VAL GLU GLY THR VAL LEU GLU ALA PRO PRO SEQRES 11 B 212 ALA SER GLY ARG ALA GLN GLU LEU ALA LYS GLU TYR LYS SEQRES 12 B 212 GLY LEU VAL SER ALA ILE LEU GLN LYS ARG GLY ALA TRP SEQRES 13 B 212 GLN VAL VAL ASP VAL VAL GLN GLN ILE ASP ASP PRO SER SEQRES 14 B 212 THR LEU ALA ASP ASN SER GLY TYR ALA PRO TYR LEU THR SEQRES 15 B 212 ASP GLU GLN LYS ILE GLU VAL LEU GLU THR VAL ASP VAL SEQRES 16 B 212 VAL GLU ARG LEU GLU LEU VAL ILE GLY TRP THR ARG ASP SEQRES 17 B 212 HIS LEU ALA GLU HET GOL A 301 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *230(H2 O) HELIX 1 AA1 ASN A 37 ARG A 54 1 18 HELIX 2 AA2 SER A 132 GLY A 154 1 23 HELIX 3 AA3 ALA A 155 GLN A 164 1 10 HELIX 4 AA4 ASP A 167 ASN A 174 1 8 HELIX 5 AA5 SER A 175 ALA A 178 5 4 HELIX 6 AA6 THR A 182 THR A 192 1 11 HELIX 7 AA7 ASP A 194 ALA A 211 1 18 HELIX 8 AA8 ASN B 37 ALA B 51 1 15 HELIX 9 AA9 SER B 132 GLY B 154 1 23 HELIX 10 AB1 ALA B 155 GLN B 163 1 9 HELIX 11 AB2 ASP B 167 ASN B 174 1 8 HELIX 12 AB3 SER B 175 ALA B 178 5 4 HELIX 13 AB4 THR B 182 THR B 192 1 11 HELIX 14 AB5 ASP B 194 ASP B 208 1 15 SHEET 1 AA1 7 VAL A 29 ASP A 33 0 SHEET 2 AA1 7 PRO A 96 THR A 112 -1 O VAL A 100 N VAL A 30 SHEET 3 AA1 7 TRP A 120 LEU A 126 -1 O TRP A 120 N THR A 112 SHEET 4 AA1 7 THR A 11 LEU A 19 -1 N LEU A 12 O GLY A 123 SHEET 5 AA1 7 ARG A 65 PRO A 70 1 O LEU A 67 N LEU A 17 SHEET 6 AA1 7 VAL A 79 ARG A 90 -1 O THR A 81 N LEU A 68 SHEET 7 AA1 7 PRO A 96 THR A 112 -1 O VAL A 99 N GLN A 87 SHEET 1 AA2 7 VAL B 29 ASP B 33 0 SHEET 2 AA2 7 PRO B 96 THR B 112 -1 O ALA B 98 N LEU B 32 SHEET 3 AA2 7 TRP B 120 VAL B 125 -1 O GLU B 122 N THR B 110 SHEET 4 AA2 7 THR B 11 LEU B 19 -1 N LEU B 12 O GLY B 123 SHEET 5 AA2 7 ARG B 65 PRO B 70 1 O LEU B 67 N LEU B 17 SHEET 6 AA2 7 VAL B 79 ARG B 90 -1 O GLY B 83 N VAL B 66 SHEET 7 AA2 7 PRO B 96 THR B 112 -1 O VAL B 103 N LEU B 82 SITE 1 AC1 5 ARG A 65 ARG A 101 VAL A 103 GLU B 36 SITE 2 AC1 5 PRO B 96 CRYST1 50.344 77.454 53.252 90.00 93.26 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019863 0.000000 0.001130 0.00000 SCALE2 0.000000 0.012911 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018809 0.00000