HEADER VIRAL PROTEIN/INHIBITOR 19-DEC-19 6VBR TITLE THE CRYSTAL STRUCTURE OF THE 2009 H1N1/CALIFORNIA PA ENDONUCLEASE WILD TITLE 2 TYPE IN COMPLEX WITH SJ000986248 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (A/LUXEMBOURG/43/2009(H1N1)); SOURCE 3 ORGANISM_TAXID: 655278; SOURCE 4 STRAIN: A/LUXEMBOURG/43/2009(H1N1); SOURCE 5 GENE: PA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NUCLEASE, INFLUENZA, INHIBITOR RESISTANCE, HYDROLASE, VIRAL PROTEIN, KEYWDS 2 VIRAL PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.G.CUYPERS,P.J.SLAVISH,Z.RANKOVIC,S.W.WHITE REVDAT 4 25-OCT-23 6VBR 1 REMARK REVDAT 3 29-MAR-23 6VBR 1 JRNL REVDAT 2 14-DEC-22 6VBR 1 TITLE JRNL REVDAT 1 10-FEB-21 6VBR 0 JRNL AUTH P.J.SLAVISH,M.G.CUYPERS,M.A.RIMMER,A.ABDOLVAHABI,T.JEEVAN, JRNL AUTH 2 G.KUMAR,J.A.JARUSIEWICZ,S.VAITHIYALINGAM,J.C.JONES, JRNL AUTH 3 J.J.BOWLING,J.E.PRICE,R.M.DUBOIS,J.MIN,R.J.WEBBY,Z.RANKOVIC, JRNL AUTH 4 S.W.WHITE JRNL TITL CHEMICAL SCAFFOLD RECYCLING: STRUCTURE-GUIDED CONVERSION OF JRNL TITL 2 AN HIV INTEGRASE INHIBITOR INTO A POTENT INFLUENZA VIRUS JRNL TITL 3 RNA-DEPENDENT RNA POLYMERASE INHIBITOR DESIGNED TO MINIMIZE JRNL TITL 4 RESISTANCE POTENTIAL. JRNL REF EUR.J.MED.CHEM. V. 247 15035 2023 JRNL REFN ISSN 0223-5234 JRNL PMID 36603507 JRNL DOI 10.1016/J.EJMECH.2022.115035 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3965 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 7611 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 705 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.8600 - 4.7000 1.00 2682 117 0.1967 0.2129 REMARK 3 2 4.7000 - 3.7300 1.00 2648 144 0.2241 0.2272 REMARK 3 3 3.7300 - 3.2600 1.00 2645 129 0.2995 0.3075 REMARK 3 4 3.2600 - 2.9600 1.00 2645 147 0.3334 0.3858 REMARK 3 5 2.9600 - 2.7500 1.00 2606 168 0.3922 0.4145 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.591 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.077 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 89.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 104.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1501 REMARK 3 ANGLE : 0.978 2032 REMARK 3 CHIRALITY : 0.059 214 REMARK 3 PLANARITY : 0.008 257 REMARK 3 DIHEDRAL : 19.197 538 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -2 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3305 35.7810 -7.7062 REMARK 3 T TENSOR REMARK 3 T11: 0.7929 T22: 0.9466 REMARK 3 T33: 1.1306 T12: -0.1304 REMARK 3 T13: 0.0126 T23: -0.3782 REMARK 3 L TENSOR REMARK 3 L11: 2.0755 L22: 3.2042 REMARK 3 L33: 5.1428 L12: -2.0198 REMARK 3 L13: -0.9731 L23: -1.6998 REMARK 3 S TENSOR REMARK 3 S11: -0.3487 S12: 0.2326 S13: -0.4877 REMARK 3 S21: 0.2578 S22: -0.0040 S23: 0.5824 REMARK 3 S31: -0.4668 S32: -0.8348 S33: 0.3629 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7424 52.7576 -19.4081 REMARK 3 T TENSOR REMARK 3 T11: 0.8641 T22: 1.1408 REMARK 3 T33: 1.0429 T12: 0.0406 REMARK 3 T13: -0.4341 T23: -0.2003 REMARK 3 L TENSOR REMARK 3 L11: 2.2981 L22: 6.4247 REMARK 3 L33: 7.2972 L12: -1.5554 REMARK 3 L13: -4.0181 L23: 1.9068 REMARK 3 S TENSOR REMARK 3 S11: -0.2363 S12: 1.1525 S13: 0.5099 REMARK 3 S21: -0.6832 S22: -0.5267 S23: 0.9168 REMARK 3 S31: -0.8596 S32: -0.7765 S33: 0.8032 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.6865 45.2577 -25.2352 REMARK 3 T TENSOR REMARK 3 T11: 0.8371 T22: 1.1128 REMARK 3 T33: 1.0516 T12: -0.0262 REMARK 3 T13: -0.3055 T23: -0.3683 REMARK 3 L TENSOR REMARK 3 L11: 2.6082 L22: 2.9107 REMARK 3 L33: 3.2852 L12: -2.2433 REMARK 3 L13: 0.1255 L23: -0.6928 REMARK 3 S TENSOR REMARK 3 S11: 0.0333 S12: 0.8382 S13: -0.1092 REMARK 3 S21: -0.7861 S22: -0.3217 S23: 0.6850 REMARK 3 S31: 0.0561 S32: -0.7459 S33: 0.3369 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7705 36.1786 -27.8968 REMARK 3 T TENSOR REMARK 3 T11: 1.4383 T22: 2.2410 REMARK 3 T33: 1.3641 T12: -0.0378 REMARK 3 T13: -0.3747 T23: -0.4246 REMARK 3 L TENSOR REMARK 3 L11: 1.2514 L22: 3.7903 REMARK 3 L33: 2.4493 L12: 1.4845 REMARK 3 L13: -1.6290 L23: -2.7295 REMARK 3 S TENSOR REMARK 3 S11: -0.9997 S12: -1.8462 S13: 1.0333 REMARK 3 S21: 0.1632 S22: 0.3966 S23: 0.3861 REMARK 3 S31: -0.8111 S32: 0.0325 S33: 0.5772 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5682 40.7590 -28.3475 REMARK 3 T TENSOR REMARK 3 T11: 1.1461 T22: 1.5912 REMARK 3 T33: 0.9574 T12: -0.1023 REMARK 3 T13: -0.7137 T23: -0.8387 REMARK 3 L TENSOR REMARK 3 L11: 1.3004 L22: 6.9459 REMARK 3 L33: 6.3571 L12: -1.4750 REMARK 3 L13: 0.8944 L23: -2.8880 REMARK 3 S TENSOR REMARK 3 S11: -0.7396 S12: 0.4432 S13: -0.4255 REMARK 3 S21: -1.3439 S22: 0.6137 S23: 0.8046 REMARK 3 S31: -0.0473 S32: -1.1150 S33: 1.6556 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8839 34.6499 -30.2866 REMARK 3 T TENSOR REMARK 3 T11: 1.2885 T22: 1.4862 REMARK 3 T33: 1.0491 T12: -0.2500 REMARK 3 T13: -0.1530 T23: -0.4752 REMARK 3 L TENSOR REMARK 3 L11: 2.1140 L22: 6.5681 REMARK 3 L33: 1.5814 L12: -0.7314 REMARK 3 L13: 1.0848 L23: -2.9252 REMARK 3 S TENSOR REMARK 3 S11: -0.0755 S12: 0.7836 S13: -0.9944 REMARK 3 S21: -1.6098 S22: -0.4605 S23: 0.4789 REMARK 3 S31: 0.2829 S32: -0.3192 S33: 0.3736 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8211 25.4649 -16.8169 REMARK 3 T TENSOR REMARK 3 T11: 1.1915 T22: 1.1237 REMARK 3 T33: 1.3463 T12: -0.3216 REMARK 3 T13: 0.0947 T23: -0.6431 REMARK 3 L TENSOR REMARK 3 L11: 1.2937 L22: 6.7558 REMARK 3 L33: 1.7502 L12: -0.6886 REMARK 3 L13: 0.1662 L23: -0.3156 REMARK 3 S TENSOR REMARK 3 S11: -0.4695 S12: 0.4451 S13: -0.8027 REMARK 3 S21: -0.0597 S22: -0.3739 S23: 0.7224 REMARK 3 S31: 0.9171 S32: -1.0060 S33: 0.6774 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VBR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246132. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7619 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 75.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.30 REMARK 200 R MERGE FOR SHELL (I) : 1.17300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5VPT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.8, 1 M AMMONIUM REMARK 280 SULFATE, 10 MM MNCL2, 10 MM MGCL2, 0.5% PVP K15, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 45.39500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 45.39500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 67.05900 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 45.39500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 45.39500 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 67.05900 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 45.39500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 45.39500 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 67.05900 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 45.39500 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 45.39500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 67.05900 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 45.39500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 45.39500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 67.05900 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 45.39500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 45.39500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 67.05900 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 45.39500 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 45.39500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 67.05900 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 45.39500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 45.39500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 67.05900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 61800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -230.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 90.79000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 90.79000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 90.79000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 90.79000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 90.79000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 90.79000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 90.79000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 90.79000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 320 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 ARG A 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 ASP A 83 CG OD1 OD2 REMARK 470 ARG A 84 NE CZ NH1 NH2 REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 PHE A 105 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 130 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 132 CG CD1 CD2 REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 ILE A 138 CG1 CG2 CD1 REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 MET A 155 CG SD CE REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 GLU A 166 CG CD OE1 OE2 REMARK 470 GLN A 193 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 30 -64.32 -123.33 REMARK 500 LYS A 139 -97.84 55.93 REMARK 500 THR A 162 -60.62 64.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 321 DISTANCE = 5.87 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 QQ4 A 203 REMARK 610 QVV A 204 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 73.5 REMARK 620 3 GLU A 119 OE2 165.0 119.3 REMARK 620 4 ILE A 120 O 77.6 95.6 92.7 REMARK 620 5 QVV A 204 O01 68.1 141.5 98.5 74.5 REMARK 620 6 QVV A 204 O02 96.2 106.4 87.7 154.5 80.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE2 REMARK 620 2 ASP A 108 OD1 116.9 REMARK 620 3 QVV A 204 O02 91.1 94.1 REMARK 620 4 QVV A 204 O03 82.9 158.0 74.8 REMARK 620 5 HOH A 302 O 117.6 83.7 148.9 95.9 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VPT RELATED DB: PDB DBREF 6VBR A 1 50 UNP C6H0Y9 C6H0Y9_9INFA 1 50 DBREF 6VBR A 73 196 UNP C6H0Y9 C6H0Y9_9INFA 73 196 SEQADV 6VBR MET A -19 UNP C6H0Y9 EXPRESSION TAG SEQADV 6VBR GLY A -18 UNP C6H0Y9 EXPRESSION TAG SEQADV 6VBR SER A -17 UNP C6H0Y9 EXPRESSION TAG SEQADV 6VBR SER A -16 UNP C6H0Y9 EXPRESSION TAG SEQADV 6VBR HIS A -15 UNP C6H0Y9 EXPRESSION TAG SEQADV 6VBR HIS A -14 UNP C6H0Y9 EXPRESSION TAG SEQADV 6VBR HIS A -13 UNP C6H0Y9 EXPRESSION TAG SEQADV 6VBR HIS A -12 UNP C6H0Y9 EXPRESSION TAG SEQADV 6VBR HIS A -11 UNP C6H0Y9 EXPRESSION TAG SEQADV 6VBR HIS A -10 UNP C6H0Y9 EXPRESSION TAG SEQADV 6VBR SER A -9 UNP C6H0Y9 EXPRESSION TAG SEQADV 6VBR SER A -8 UNP C6H0Y9 EXPRESSION TAG SEQADV 6VBR GLY A -7 UNP C6H0Y9 EXPRESSION TAG SEQADV 6VBR LEU A -6 UNP C6H0Y9 EXPRESSION TAG SEQADV 6VBR VAL A -5 UNP C6H0Y9 EXPRESSION TAG SEQADV 6VBR PRO A -4 UNP C6H0Y9 EXPRESSION TAG SEQADV 6VBR ARG A -3 UNP C6H0Y9 EXPRESSION TAG SEQADV 6VBR GLY A -2 UNP C6H0Y9 EXPRESSION TAG SEQADV 6VBR SER A -1 UNP C6H0Y9 EXPRESSION TAG SEQADV 6VBR HIS A 0 UNP C6H0Y9 EXPRESSION TAG SEQADV 6VBR GLY A 51 UNP C6H0Y9 LINKER SEQADV 6VBR GLY A 52 UNP C6H0Y9 LINKER SEQADV 6VBR SER A 53 UNP C6H0Y9 LINKER SEQRES 1 A 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 197 LEU VAL PRO ARG GLY SER HIS MET GLU ASP PHE VAL ARG SEQRES 3 A 197 GLN CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS SEQRES 4 A 197 ALA MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR SEQRES 5 A 197 ASN LYS PHE ALA ALA ILE CYS THR HIS LEU GLU VAL CYS SEQRES 6 A 197 PHE MET TYR SER ASP GLY GLY SER LYS HIS ARG PHE GLU SEQRES 7 A 197 ILE ILE GLU GLY ARG ASP ARG ILE MET ALA TRP THR VAL SEQRES 8 A 197 VAL ASN SER ILE CYS ASN THR THR GLY VAL GLU LYS PRO SEQRES 9 A 197 LYS PHE LEU PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG SEQRES 10 A 197 PHE ILE GLU ILE GLY VAL THR ARG ARG GLU VAL HIS ILE SEQRES 11 A 197 TYR TYR LEU GLU LYS ALA ASN LYS ILE LYS SER GLU LYS SEQRES 12 A 197 THR HIS ILE HIS ILE PHE SER PHE THR GLY GLU GLU MET SEQRES 13 A 197 ALA THR LYS ALA ASP TYR THR LEU ASP GLU GLU SER ARG SEQRES 14 A 197 ALA ARG ILE LYS THR ARG LEU PHE THR ILE ARG GLN GLU SEQRES 15 A 197 MET ALA SER ARG SER LEU TRP ASP SER PHE ARG GLN SER SEQRES 16 A 197 GLU ARG HET MN A 201 1 HET MN A 202 1 HET QQ4 A 203 31 HET QVV A 204 27 HET SO4 A 205 5 HETNAM MN MANGANESE (II) ION HETNAM QQ4 HEXA VINYLPYRROLIDONE K15 HETNAM QVV BENZYL [2-(4-{[2-(6-AMINO-9H-PURIN-9-YL) HETNAM 2 QVV ETHYL]CARBAMOYL}-5-HYDROXY-6-OXO-1,6-DIHYDROPYRIMIDIN- HETNAM 3 QVV 2-YL)PROPAN-2-YL]CARBAMATE HETNAM SO4 SULFATE ION HETSYN QQ4 1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-DODECANE- HETSYN 2 QQ4 1,3,5,7,9,11-HEXAYL]HEXA(PYRROLIDIN-2-ONE) HETSYN QVV SJ000988248 FORMUL 2 MN 2(MN 2+) FORMUL 4 QQ4 C36 H56 N6 O6 FORMUL 5 QVV C23 H25 N9 O5 FORMUL 6 SO4 O4 S 2- FORMUL 7 HOH *21(H2 O) HELIX 1 AA1 SER A -1 PHE A 9 1 11 HELIX 2 AA2 ASN A 10 TYR A 24 1 15 HELIX 3 AA3 GLU A 31 GLY A 51 1 21 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 LYS A 139 1 14 HELIX 6 AA6 ALA A 156 ASP A 160 5 5 HELIX 7 AA7 ASP A 164 SER A 184 1 21 HELIX 8 AA8 LEU A 187 GLU A 195 1 9 SHEET 1 AA1 4 PHE A 76 ILE A 78 0 SHEET 2 AA1 4 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA1 4 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA1 4 HIS A 144 SER A 149 1 O HIS A 146 N GLU A 119 LINK NE2 HIS A 41 MN MN A 201 1555 1555 2.59 LINK OE2 GLU A 80 MN MN A 202 1555 1555 2.80 LINK OD2 ASP A 108 MN MN A 201 1555 1555 1.98 LINK OD1 ASP A 108 MN MN A 202 1555 1555 1.88 LINK OE2 GLU A 119 MN MN A 201 1555 1555 1.89 LINK O ILE A 120 MN MN A 201 1555 1555 2.21 LINK MN MN A 201 O01 QVV A 204 1555 1555 2.26 LINK MN MN A 201 O02 QVV A 204 1555 1555 2.15 LINK MN MN A 202 O02 QVV A 204 1555 1555 2.17 LINK MN MN A 202 O03 QVV A 204 1555 1555 2.16 LINK MN MN A 202 O HOH A 302 1555 1555 2.23 CRYST1 90.790 90.790 134.118 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011014 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011014 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007456 0.00000