HEADER OXIDOREDUCTASE 19-DEC-19 6VBY TITLE CINNAMATE 4-HYDROXYLASE (C4H1) FROM SORGHUM BICOLOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CINNAMIC ACID 4-HYDROXYLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.13.11; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SORGHUM BICOLOR; SOURCE 3 ORGANISM_COMMON: SORGHUM; SOURCE 4 ORGANISM_TAXID: 4558; SOURCE 5 GENE: C4H, SORBI_3002G126600; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYP, BIOFUEL, MONOOXGENASE, LIGNIN, MONOLIGNOL, ELECTRON TRANSPORT, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR B.ZHANG,C.KANG,K.M.LEWIS REVDAT 3 11-OCT-23 6VBY 1 REMARK REVDAT 2 15-JUL-20 6VBY 1 JRNL REVDAT 1 06-MAY-20 6VBY 0 JRNL AUTH B.ZHANG,K.M.LEWIS,A.ABRIL,D.R.DAVYDOV,W.VERMERRIS, JRNL AUTH 2 S.E.SATTLER,C.KANG JRNL TITL STRUCTURE AND FUNCTION OF THE CYTOCHROME P450 MONOOXYGENASE JRNL TITL 2 CINNAMATE 4-HYDROXYLASE FROMSORGHUM BICOLOR. JRNL REF PLANT PHYSIOL. V. 183 957 2020 JRNL REFN ESSN 1532-2548 JRNL PMID 32332088 JRNL DOI 10.1104/PP.20.00406 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 87922 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.270 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 65.2750 - 4.0971 1.00 6368 150 0.1717 0.1622 REMARK 3 2 4.0971 - 3.2520 1.00 6209 144 0.1594 0.1783 REMARK 3 3 3.2520 - 2.8409 1.00 6172 141 0.1796 0.1955 REMARK 3 4 2.8409 - 2.5812 1.00 6114 143 0.1944 0.2310 REMARK 3 5 2.5812 - 2.3962 1.00 6147 144 0.1912 0.2440 REMARK 3 6 2.3962 - 2.2549 1.00 6144 143 0.1953 0.2260 REMARK 3 7 2.2549 - 2.1419 1.00 6088 140 0.2014 0.2245 REMARK 3 8 2.1419 - 2.0487 1.00 6110 141 0.2051 0.2376 REMARK 3 9 2.0487 - 1.9698 1.00 6113 145 0.2261 0.2251 REMARK 3 10 1.9698 - 1.9018 1.00 6101 143 0.2498 0.2875 REMARK 3 11 1.9018 - 1.8424 1.00 6095 140 0.2560 0.2658 REMARK 3 12 1.8424 - 1.7897 1.00 6098 141 0.2732 0.2949 REMARK 3 13 1.7897 - 1.7426 1.00 6077 145 0.2997 0.3005 REMARK 3 14 1.7426 - 1.7001 1.00 6086 140 0.3201 0.3233 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): -61.8703 12.7662 31.7318 REMARK 3 T TENSOR REMARK 3 T11: 0.1835 T22: 0.0788 REMARK 3 T33: 0.1074 T12: 0.0011 REMARK 3 T13: -0.0074 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 0.5401 L22: 0.6977 REMARK 3 L33: 0.7509 L12: 0.2025 REMARK 3 L13: -0.2418 L23: -0.3232 REMARK 3 S TENSOR REMARK 3 S11: -0.0263 S12: 0.0209 S13: -0.0249 REMARK 3 S21: 0.0303 S22: 0.0391 S23: -0.0033 REMARK 3 S31: 0.0717 S32: 0.0321 S33: -0.0178 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 232 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): -75.7699 25.2642 31.0761 REMARK 3 T TENSOR REMARK 3 T11: 0.2546 T22: 0.1054 REMARK 3 T33: 0.1757 T12: 0.0599 REMARK 3 T13: 0.0014 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 1.8304 L22: 1.9450 REMARK 3 L33: 3.9050 L12: 0.1306 REMARK 3 L13: -0.3245 L23: -1.4431 REMARK 3 S TENSOR REMARK 3 S11: 0.0540 S12: 0.2569 S13: 0.2015 REMARK 3 S21: -0.3250 S22: 0.0217 S23: 0.1587 REMARK 3 S31: -0.0657 S32: -0.1384 S33: -0.0736 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 273 THROUGH 501 ) REMARK 3 ORIGIN FOR THE GROUP (A): -50.7003 13.4232 26.2686 REMARK 3 T TENSOR REMARK 3 T11: 0.1935 T22: 0.0769 REMARK 3 T33: 0.1172 T12: -0.0013 REMARK 3 T13: -0.0144 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.6521 L22: 0.6590 REMARK 3 L33: 0.7675 L12: 0.1974 REMARK 3 L13: -0.1455 L23: -0.0775 REMARK 3 S TENSOR REMARK 3 S11: -0.0213 S12: 0.0162 S13: -0.0791 REMARK 3 S21: 0.0369 S22: 0.0092 S23: -0.0896 REMARK 3 S31: 0.0636 S32: 0.0923 S33: 0.0138 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VBY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000245888. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87984 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 65.275 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 18.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.120 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4R1Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 7.5, 12% (V/V) REMARK 280 ISOPROPANOL AND 14% (W/V) PEG 2,000, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.95400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.47700 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.47700 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.95400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O2 GOL A 603 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 705 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1177 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1226 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 LEU A 3 REMARK 465 VAL A 4 REMARK 465 LEU A 5 REMARK 465 LEU A 6 REMARK 465 GLU A 7 REMARK 465 LYS A 8 REMARK 465 ALA A 9 REMARK 465 LEU A 10 REMARK 465 LEU A 11 REMARK 465 GLY A 12 REMARK 465 LEU A 13 REMARK 465 PHE A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 VAL A 18 REMARK 465 LEU A 19 REMARK 465 ALA A 20 REMARK 465 VAL A 21 REMARK 465 ALA A 22 REMARK 465 VAL A 23 REMARK 465 ALA A 24 REMARK 465 LYS A 25 REMARK 465 LEU A 26 REMARK 465 THR A 27 REMARK 465 GLY A 28 REMARK 465 LYS A 29 REMARK 465 ARG A 30 REMARK 465 TYR A 31 REMARK 465 HIS A 502 REMARK 465 HIS A 503 REMARK 465 HIS A 504 REMARK 465 HIS A 505 REMARK 465 HIS A 506 REMARK 465 HIS A 507 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH11 ARG A 236 O HOH A 706 1.33 REMARK 500 HH22 ARG A 131 O HOH A 703 1.34 REMARK 500 HH21 ARG A 131 O HOH A 710 1.49 REMARK 500 HZ2 LYS A 128 O HOH A 721 1.53 REMARK 500 HH21 ARG A 408 O HOH A 709 1.57 REMARK 500 HZ3 LYS A 327 O HOH A 718 1.59 REMARK 500 O HOH A 711 O HOH A 1141 1.59 REMARK 500 OE1 GLU A 89 O HOH A 701 1.72 REMARK 500 O HOH A 1050 O HOH A 1394 1.82 REMARK 500 O HOH A 915 O HOH A 1097 1.86 REMARK 500 O HOH A 1186 O HOH A 1247 1.86 REMARK 500 O HOH A 1275 O HOH A 1413 1.87 REMARK 500 O HOH A 1278 O HOH A 1284 1.88 REMARK 500 O HOH A 1069 O HOH A 1157 1.90 REMARK 500 O HOH A 1428 O HOH A 1435 1.92 REMARK 500 O HOH A 1271 O HOH A 1308 1.93 REMARK 500 O HOH A 911 O HOH A 1113 1.93 REMARK 500 O HOH A 1111 O HOH A 1196 1.93 REMARK 500 O HOH A 1044 O HOH A 1246 1.93 REMARK 500 O HOH A 912 O HOH A 1223 1.93 REMARK 500 O HOH A 1287 O HOH A 1363 1.94 REMARK 500 O HOH A 1172 O HOH A 1212 1.94 REMARK 500 O HOH A 739 O HOH A 772 1.95 REMARK 500 O HOH A 1107 O HOH A 1319 1.95 REMARK 500 O HOH A 1249 O HOH A 1369 1.97 REMARK 500 O HOH A 1322 O HOH A 1428 1.98 REMARK 500 O HOH A 1041 O HOH A 1094 1.99 REMARK 500 O HOH A 1091 O HOH A 1210 1.99 REMARK 500 OE2 GLU A 330 O HOH A 702 2.00 REMARK 500 O HOH A 1165 O HOH A 1373 2.01 REMARK 500 O HOH A 1089 O HOH A 1128 2.02 REMARK 500 O HOH A 1352 O HOH A 1356 2.02 REMARK 500 O HOH A 1224 O HOH A 1239 2.02 REMARK 500 O HOH A 1131 O HOH A 1274 2.04 REMARK 500 O HOH A 1363 O HOH A 1434 2.04 REMARK 500 O HOH A 780 O HOH A 1379 2.04 REMARK 500 O HOH A 1146 O HOH A 1191 2.05 REMARK 500 O HOH A 963 O HOH A 1310 2.06 REMARK 500 O HOH A 887 O HOH A 961 2.08 REMARK 500 O HOH A 1121 O HOH A 1196 2.09 REMARK 500 O HOH A 1409 O HOH A 1425 2.09 REMARK 500 O HOH A 1164 O HOH A 1361 2.11 REMARK 500 O HOH A 1323 O HOH A 1368 2.11 REMARK 500 O HOH A 829 O HOH A 964 2.12 REMARK 500 NH2 ARG A 131 O HOH A 703 2.12 REMARK 500 OE2 GLU A 221 O HOH A 704 2.12 REMARK 500 O HOH A 712 O HOH A 1338 2.13 REMARK 500 O HOH A 758 O HOH A 887 2.14 REMARK 500 O HOH A 1125 O HOH A 1206 2.15 REMARK 500 O HOH A 1109 O HOH A 1138 2.16 REMARK 500 REMARK 500 THIS ENTRY HAS 60 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2 GOL A 603 HO2 GOL A 603 5556 0.84 REMARK 500 HO2 GOL A 603 HO2 GOL A 603 5556 0.85 REMARK 500 C2 GOL A 603 O2 GOL A 603 5556 1.38 REMARK 500 O HOH A 852 O HOH A 979 5555 1.91 REMARK 500 O1 GOL A 603 O1 GOL A 603 5556 1.97 REMARK 500 O HOH A 1038 O HOH A 1279 2564 2.02 REMARK 500 O HOH A 1190 O HOH A 1193 5556 2.08 REMARK 500 O1 GOL A 603 O3 GOL A 603 5556 2.13 REMARK 500 O HOH A 1422 O HOH A 1426 5555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 42 -33.37 49.62 REMARK 500 HIS A 92 -69.65 -121.85 REMARK 500 ASP A 116 -154.05 -95.23 REMARK 500 ALA A 169 -95.21 -111.07 REMARK 500 PHE A 257 -50.02 -134.20 REMARK 500 ILE A 304 -66.15 -93.09 REMARK 500 ILE A 367 78.04 -114.44 REMARK 500 LEU A 370 -137.87 52.27 REMARK 500 GLU A 419 -105.93 -123.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1426 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A1427 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A1428 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A1429 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A1430 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A1431 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A1432 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A1433 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A1434 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A1435 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A1436 DISTANCE = 7.53 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 602 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 443 SG REMARK 620 2 HEM A 602 NA 95.0 REMARK 620 3 HEM A 602 NB 86.1 88.8 REMARK 620 4 HEM A 602 NC 88.7 176.2 90.7 REMARK 620 5 HEM A 602 ND 95.8 89.9 177.8 90.4 REMARK 620 6 EPE A 601 O8 172.6 91.6 90.7 84.6 87.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 604 DBREF 6VBY A 1 501 UNP Q94IP1 Q94IP1_SORBI 1 501 SEQADV 6VBY HIS A 502 UNP Q94IP1 EXPRESSION TAG SEQADV 6VBY HIS A 503 UNP Q94IP1 EXPRESSION TAG SEQADV 6VBY HIS A 504 UNP Q94IP1 EXPRESSION TAG SEQADV 6VBY HIS A 505 UNP Q94IP1 EXPRESSION TAG SEQADV 6VBY HIS A 506 UNP Q94IP1 EXPRESSION TAG SEQADV 6VBY HIS A 507 UNP Q94IP1 EXPRESSION TAG SEQRES 1 A 507 MET ASP LEU VAL LEU LEU GLU LYS ALA LEU LEU GLY LEU SEQRES 2 A 507 PHE ALA ALA ALA VAL LEU ALA VAL ALA VAL ALA LYS LEU SEQRES 3 A 507 THR GLY LYS ARG TYR ARG LEU PRO PRO GLY PRO ALA GLY SEQRES 4 A 507 ALA PRO VAL VAL GLY ASN TRP LEU GLN VAL GLY ASP ASP SEQRES 5 A 507 LEU ASN HIS ARG ASN LEU MET SER LEU ALA LYS ARG PHE SEQRES 6 A 507 GLY ASP ILE PHE LEU LEU ARG MET GLY VAL ARG ASN LEU SEQRES 7 A 507 VAL VAL VAL SER THR PRO GLU LEU ALA LYS GLU VAL LEU SEQRES 8 A 507 HIS THR GLN GLY VAL GLU PHE GLY SER ARG THR ARG ASN SEQRES 9 A 507 VAL VAL PHE ASP ILE PHE THR GLY LYS GLY GLN ASP MET SEQRES 10 A 507 VAL PHE THR VAL TYR GLY ASP HIS TRP ARG LYS MET ARG SEQRES 11 A 507 ARG ILE MET THR VAL PRO PHE PHE THR ASN LYS VAL VAL SEQRES 12 A 507 ALA GLN ASN ARG VAL GLY TRP GLU GLU GLU ALA ARG LEU SEQRES 13 A 507 VAL VAL GLU ASP VAL ARG LYS ASP PRO ARG ALA ALA ALA SEQRES 14 A 507 GLU GLY VAL VAL ILE ARG ARG ARG LEU GLN LEU MET MET SEQRES 15 A 507 TYR ASN ASP MET PHE ARG ILE MET PHE ASP THR ARG PHE SEQRES 16 A 507 GLU SER GLU GLN ASP PRO LEU PHE ASN LYS LEU LYS ALA SEQRES 17 A 507 LEU ASN ALA GLU ARG SER ARG LEU SER GLN SER PHE GLU SEQRES 18 A 507 TYR ASN TYR GLY ASP PHE ILE PRO VAL LEU ARG PRO PHE SEQRES 19 A 507 LEU ARG GLY TYR LEU ASN ARG CYS HIS ASP LEU LYS THR SEQRES 20 A 507 ARG ARG MET LYS VAL PHE GLU ASP ASN PHE VAL GLN GLU SEQRES 21 A 507 ARG LYS LYS VAL MET ALA GLN THR GLY GLU ILE ARG CYS SEQRES 22 A 507 ALA MET ASP HIS ILE LEU GLU ALA GLU ARG LYS GLY GLU SEQRES 23 A 507 ILE ASN HIS ASP ASN VAL LEU TYR ILE VAL GLU ASN ILE SEQRES 24 A 507 ASN VAL ALA ALA ILE GLU THR THR LEU TRP SER ILE GLU SEQRES 25 A 507 TRP GLY ILE ALA GLU LEU VAL ASN HIS PRO ALA ILE GLN SEQRES 26 A 507 SER LYS LEU ARG GLU GLU MET ASP SER VAL LEU GLY ALA SEQRES 27 A 507 GLY VAL PRO VAL THR GLU PRO ASP LEU GLU ARG LEU PRO SEQRES 28 A 507 TYR LEU GLN ALA ILE VAL LYS GLU THR LEU ARG LEU ARG SEQRES 29 A 507 MET ALA ILE PRO LEU LEU VAL PRO HIS MET ASN LEU ASN SEQRES 30 A 507 ASP GLY LYS LEU ALA GLY TYR ASP ILE PRO ALA GLU SER SEQRES 31 A 507 LYS ILE LEU VAL ASN ALA TRP PHE LEU ALA ASN ASP PRO SEQRES 32 A 507 LYS ARG TRP VAL ARG PRO ASP GLU PHE ARG PRO GLU ARG SEQRES 33 A 507 PHE LEU GLU GLU GLU LYS THR VAL GLU ALA HIS GLY ASN SEQRES 34 A 507 ASP PHE ARG PHE VAL PRO PHE GLY VAL GLY ARG ARG SER SEQRES 35 A 507 CYS PRO GLY ILE ILE LEU ALA LEU PRO ILE ILE GLY ILE SEQRES 36 A 507 THR LEU GLY ARG LEU VAL GLN ASN PHE GLN LEU LEU PRO SEQRES 37 A 507 PRO PRO GLY GLN ASP LYS ILE ASP THR THR GLU LYS PRO SEQRES 38 A 507 GLY GLN PHE SER ASN GLN ILE ALA LYS HIS ALA THR ILE SEQRES 39 A 507 VAL CYS LYS PRO LEU GLU ALA HIS HIS HIS HIS HIS HIS HET EPE A 601 32 HET HEM A 602 73 HET GOL A 603 14 HET GOL A 604 13 HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM GOL GLYCEROL HETSYN EPE HEPES HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 EPE C8 H18 N2 O4 S FORMUL 3 HEM C34 H32 FE N4 O4 FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 HOH *736(H2 O) HELIX 1 AA1 ASN A 45 GLY A 50 1 6 HELIX 2 AA2 ASN A 54 GLY A 66 1 13 HELIX 3 AA3 THR A 83 HIS A 92 1 10 HELIX 4 AA4 ASN A 104 GLY A 112 1 9 HELIX 5 AA5 GLY A 123 PHE A 138 1 16 HELIX 6 AA6 THR A 139 ASP A 164 1 26 HELIX 7 AA7 PRO A 165 ALA A 169 5 5 HELIX 8 AA8 ILE A 174 ASP A 192 1 19 HELIX 9 AA9 ASP A 200 SER A 219 1 20 HELIX 10 AB1 TYR A 222 ILE A 228 1 7 HELIX 11 AB2 PRO A 229 PHE A 234 5 6 HELIX 12 AB3 LEU A 235 PHE A 257 1 23 HELIX 13 AB4 PHE A 257 GLY A 269 1 13 HELIX 14 AB5 CYS A 273 LYS A 284 1 12 HELIX 15 AB6 ASN A 288 ALA A 303 1 16 HELIX 16 AB7 ALA A 303 HIS A 321 1 19 HELIX 17 AB8 HIS A 321 GLY A 337 1 17 HELIX 18 AB9 THR A 343 ARG A 349 5 7 HELIX 19 AC1 LEU A 350 ARG A 364 1 15 HELIX 20 AC2 ASN A 395 ASP A 402 1 8 HELIX 21 AC3 ARG A 413 GLU A 419 5 7 HELIX 22 AC4 GLY A 445 ASN A 463 1 19 SHEET 1 AA1 4 ILE A 68 MET A 73 0 SHEET 2 AA1 4 ARG A 76 VAL A 81 -1 O LEU A 78 N LEU A 71 SHEET 3 AA1 4 LYS A 391 VAL A 394 1 O LYS A 391 N VAL A 79 SHEET 4 AA1 4 HIS A 373 MET A 374 -1 N HIS A 373 O ILE A 392 SHEET 1 AA2 3 VAL A 172 VAL A 173 0 SHEET 2 AA2 3 THR A 493 PRO A 498 -1 O ILE A 494 N VAL A 172 SHEET 3 AA2 3 PHE A 464 LEU A 467 -1 N LEU A 467 O VAL A 495 SHEET 1 AA3 2 GLY A 379 LEU A 381 0 SHEET 2 AA3 2 TYR A 384 ILE A 386 -1 O ILE A 386 N GLY A 379 SHEET 1 AA4 2 GLU A 479 PRO A 481 0 SHEET 2 AA4 2 ASN A 486 ILE A 488 -1 O GLN A 487 N LYS A 480 LINK SG CYS A 443 FE HEM A 602 1555 1555 2.49 LINK O8 EPE A 601 FE HEM A 602 1555 1555 2.28 SITE 1 AC1 11 PHE A 107 ARG A 213 SER A 214 SER A 217 SITE 2 AC1 11 GLN A 218 VAL A 301 ALA A 302 ILE A 367 SITE 3 AC1 11 HEM A 602 HOH A 938 HOH A1085 SITE 1 AC2 22 ARG A 101 VAL A 118 TRP A 126 ARG A 130 SITE 2 AC2 22 PHE A 138 MET A 186 ALA A 302 ALA A 303 SITE 3 AC2 22 THR A 307 LEU A 370 VAL A 371 HIS A 373 SITE 4 AC2 22 PRO A 435 PHE A 436 ARG A 441 CYS A 443 SITE 5 AC2 22 PRO A 444 GLY A 445 LEU A 448 ALA A 449 SITE 6 AC2 22 EPE A 601 HOH A 765 SITE 1 AC3 5 LEU A 47 GLN A 48 VAL A 49 HOH A 705 SITE 2 AC3 5 HOH A 962 SITE 1 AC4 8 THR A 102 ARG A 103 PHE A 107 PHE A 119 SITE 2 AC4 8 LYS A 391 HOH A 750 HOH A 872 HOH A 909 CRYST1 132.278 132.278 79.431 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007560 0.004365 0.000000 0.00000 SCALE2 0.000000 0.008729 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012590 0.00000