HEADER TRANSFERASE 19-DEC-19 6VBZ TITLE CRYSTAL STRUCTURE OF THE RAT MLKL PSEUDOKINASE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MIXED LINEAGE KINASE DOMAIN-LIKE PSEUDOKINASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PSEUDOKINASE DOMAIN; COMPND 5 SYNONYM: RCG51567; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: MLKL, RCG_51567; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS CELL DEATH, NECROPTOSIS, PSEUDOKINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.A.DAVIES,P.E.CZABOTAR REVDAT 2 11-OCT-23 6VBZ 1 LINK REVDAT 1 08-JUL-20 6VBZ 0 JRNL AUTH K.A.DAVIES,C.FITZGIBBON,S.N.YOUNG,S.E.GARNISH,W.YEUNG, JRNL AUTH 2 D.COURSIER,R.W.BIRKINSHAW,J.J.SANDOW,W.I.L.LEHMANN, JRNL AUTH 3 L.Y.LIANG,I.S.LUCET,J.D.CHALMERS,W.M.PATRICK,N.KANNAN, JRNL AUTH 4 E.J.PETRIE,P.E.CZABOTAR,J.M.MURPHY JRNL TITL DISTINCT PSEUDOKINASE DOMAIN CONFORMATIONS UNDERLIE JRNL TITL 2 DIVERGENT ACTIVATION MECHANISMS AMONG VERTEBRATE MLKL JRNL TITL 3 ORTHOLOGUES. JRNL REF NAT COMMUN V. 11 3060 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32561735 JRNL DOI 10.1038/S41467-020-16823-3 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 42668 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4265 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5770 - 6.8064 1.00 1439 161 0.1779 0.2121 REMARK 3 2 6.8064 - 5.4047 1.00 1346 150 0.1940 0.1913 REMARK 3 3 5.4047 - 4.7222 1.00 1327 147 0.1602 0.1794 REMARK 3 4 4.7222 - 4.2907 1.00 1311 145 0.1343 0.1630 REMARK 3 5 4.2907 - 3.9833 1.00 1304 145 0.1495 0.1687 REMARK 3 6 3.9833 - 3.7486 1.00 1296 144 0.1608 0.2079 REMARK 3 7 3.7486 - 3.5609 1.00 1291 144 0.1618 0.2069 REMARK 3 8 3.5609 - 3.4059 1.00 1289 143 0.1833 0.1894 REMARK 3 9 3.4059 - 3.2748 1.00 1283 142 0.1892 0.2313 REMARK 3 10 3.2748 - 3.1619 1.00 1278 143 0.2111 0.2537 REMARK 3 11 3.1619 - 3.0630 1.00 1283 143 0.2007 0.2530 REMARK 3 12 3.0630 - 2.9755 1.00 1272 141 0.2023 0.2597 REMARK 3 13 2.9755 - 2.8971 1.00 1273 142 0.1953 0.2454 REMARK 3 14 2.8971 - 2.8265 1.00 1286 143 0.1888 0.2078 REMARK 3 15 2.8265 - 2.7622 1.00 1264 140 0.2048 0.2441 REMARK 3 16 2.7622 - 2.7034 1.00 1267 141 0.1913 0.2557 REMARK 3 17 2.7034 - 2.6494 1.00 1286 143 0.2014 0.2341 REMARK 3 18 2.6494 - 2.5994 1.00 1255 139 0.1972 0.2152 REMARK 3 19 2.5994 - 2.5530 1.00 1285 142 0.2051 0.2408 REMARK 3 20 2.5530 - 2.5097 1.00 1243 139 0.2122 0.2861 REMARK 3 21 2.5097 - 2.4692 1.00 1271 142 0.1969 0.2236 REMARK 3 22 2.4692 - 2.4312 1.00 1256 139 0.2008 0.2552 REMARK 3 23 2.4312 - 2.3955 1.00 1285 142 0.1966 0.2315 REMARK 3 24 2.3955 - 2.3617 1.00 1246 138 0.2013 0.2680 REMARK 3 25 2.3617 - 2.3298 1.00 1270 140 0.2009 0.2466 REMARK 3 26 2.3298 - 2.2995 1.00 1263 141 0.2111 0.2628 REMARK 3 27 2.2995 - 2.2708 1.00 1260 140 0.2167 0.2483 REMARK 3 28 2.2708 - 2.2434 1.00 1264 141 0.2213 0.2757 REMARK 3 29 2.2434 - 2.2174 1.00 1253 138 0.2279 0.2988 REMARK 3 30 2.2174 - 2.1924 0.92 1157 127 0.2406 0.2825 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4200 REMARK 3 ANGLE : 1.137 5674 REMARK 3 CHIRALITY : 0.060 628 REMARK 3 PLANARITY : 0.007 728 REMARK 3 DIHEDRAL : 17.957 2578 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -68.2933 24.6757 12.8966 REMARK 3 T TENSOR REMARK 3 T11: 0.2441 T22: 0.1618 REMARK 3 T33: 0.2073 T12: -0.0369 REMARK 3 T13: 0.0176 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 0.2131 L22: 1.2794 REMARK 3 L33: 0.6481 L12: -0.2473 REMARK 3 L13: 0.1140 L23: 0.5546 REMARK 3 S TENSOR REMARK 3 S11: -0.0044 S12: -0.0120 S13: 0.0148 REMARK 3 S21: 0.0666 S22: 0.0212 S23: -0.0430 REMARK 3 S31: 0.0188 S32: -0.0143 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VBZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246160. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 293.15 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42719 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 48.577 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.20 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.32800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4MWI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MANGANESE CHLORIDE, POLYETHYLENE REMARK 280 GLYCOL 400, SODIUM MES, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.91967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.83933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.87950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 64.79917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 12.95983 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 25.91967 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 51.83933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 64.79917 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 38.87950 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 12.95983 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 609 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 170 REMARK 465 ALA A 171 REMARK 465 MET A 172 REMARK 465 GLY A 173 REMARK 465 SER A 174 REMARK 465 GLN A 175 REMARK 465 GLU A 176 REMARK 465 VAL A 177 REMARK 465 PRO A 178 REMARK 465 GLN A 179 REMARK 465 ASP A 180 REMARK 465 PHE A 181 REMARK 465 GLN A 182 REMARK 465 LYS A 341 REMARK 465 THR A 342 REMARK 465 GLN A 343 REMARK 465 THR A 344 REMARK 465 SER A 345 REMARK 465 ILE A 346 REMARK 465 SER A 347 REMARK 465 ARG A 348 REMARK 465 ALA A 349 REMARK 465 THR A 350 REMARK 465 LYS A 351 REMARK 465 SER A 352 REMARK 465 THR A 353 REMARK 465 LYS A 354 REMARK 465 ALA A 355 REMARK 465 GLU A 356 REMARK 465 ALA A 455 REMARK 465 ILE A 456 REMARK 465 GLU A 457 REMARK 465 ASP A 458 REMARK 465 SER A 459 REMARK 465 MET A 460 REMARK 465 ASP A 461 REMARK 465 LYS A 462 REMARK 465 LYS A 463 REMARK 465 LEU A 464 REMARK 465 GLY B 170 REMARK 465 ALA B 171 REMARK 465 MET B 172 REMARK 465 GLY B 173 REMARK 465 SER B 174 REMARK 465 GLN B 175 REMARK 465 GLU B 176 REMARK 465 VAL B 177 REMARK 465 PRO B 178 REMARK 465 GLN B 179 REMARK 465 ASP B 180 REMARK 465 PHE B 181 REMARK 465 SER B 340 REMARK 465 LYS B 341 REMARK 465 THR B 342 REMARK 465 GLN B 343 REMARK 465 THR B 344 REMARK 465 SER B 345 REMARK 465 ILE B 346 REMARK 465 SER B 347 REMARK 465 ARG B 348 REMARK 465 ALA B 349 REMARK 465 THR B 350 REMARK 465 LYS B 351 REMARK 465 SER B 352 REMARK 465 THR B 353 REMARK 465 LYS B 354 REMARK 465 ALA B 355 REMARK 465 GLU B 356 REMARK 465 ALA B 455 REMARK 465 ILE B 456 REMARK 465 GLU B 457 REMARK 465 ASP B 458 REMARK 465 SER B 459 REMARK 465 MET B 460 REMARK 465 ASP B 461 REMARK 465 LYS B 462 REMARK 465 LYS B 463 REMARK 465 LEU B 464 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 191 79.85 -101.31 REMARK 500 LYS A 213 18.26 59.77 REMARK 500 ASN A 318 68.67 -157.63 REMARK 500 ALA A 335 -150.16 -127.94 REMARK 500 ASN B 201 -162.10 -110.44 REMARK 500 ASN B 318 63.20 -152.43 REMARK 500 LEU B 453 -61.27 -99.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 371 OD1 REMARK 620 2 HOH A 698 O 157.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 503 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 426 OE2 REMARK 620 2 GLU A 430 OE2 98.8 REMARK 620 3 HOH A 601 O 103.4 54.3 REMARK 620 4 HOH A 651 O 178.2 79.5 76.2 REMARK 620 5 HOH A 686 O 85.8 118.1 168.6 94.4 REMARK 620 6 HIS B 438 NE2 29.3 70.6 80.6 149.3 105.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 503 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 371 OD2 REMARK 620 2 HOH B 639 O 66.6 REMARK 620 3 HOH B 669 O 85.4 53.2 REMARK 620 4 HOH B 679 O 86.2 152.5 131.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 405 OE2 REMARK 620 2 GLU B 409 OE2 100.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 503 DBREF 6VBZ A 175 464 UNP D3ZKP6 D3ZKP6_RAT 175 464 DBREF 6VBZ B 175 464 UNP D3ZKP6 D3ZKP6_RAT 175 464 SEQADV 6VBZ GLY A 170 UNP D3ZKP6 EXPRESSION TAG SEQADV 6VBZ ALA A 171 UNP D3ZKP6 EXPRESSION TAG SEQADV 6VBZ MET A 172 UNP D3ZKP6 EXPRESSION TAG SEQADV 6VBZ GLY A 173 UNP D3ZKP6 EXPRESSION TAG SEQADV 6VBZ SER A 174 UNP D3ZKP6 EXPRESSION TAG SEQADV 6VBZ GLY B 170 UNP D3ZKP6 EXPRESSION TAG SEQADV 6VBZ ALA B 171 UNP D3ZKP6 EXPRESSION TAG SEQADV 6VBZ MET B 172 UNP D3ZKP6 EXPRESSION TAG SEQADV 6VBZ GLY B 173 UNP D3ZKP6 EXPRESSION TAG SEQADV 6VBZ SER B 174 UNP D3ZKP6 EXPRESSION TAG SEQRES 1 A 295 GLY ALA MET GLY SER GLN GLU VAL PRO GLN ASP PHE GLN SEQRES 2 A 295 VAL LYS GLU ILE PRO LYS GLU ASP LEU GLY TYR PRO TRP SEQRES 3 A 295 THR LYS LEU LYS THR ASN LYS LEU SER THR ILE TYR ARG SEQRES 4 A 295 GLY GLU TYR TYR LYS SER PRO VAL THR ILE LYS VAL PHE SEQRES 5 A 295 ASN ASN PRO LYS ALA GLU SER VAL GLY ILE VAL ARG LEU SEQRES 6 A 295 THR PHE ASN GLU GLU ILE LYS THR MET LYS LYS PHE ASP SEQRES 7 A 295 SER PRO ASN ILE LEU ARG ILE PHE GLY ILE CYS ILE ASP SEQRES 8 A 295 GLN THR VAL LYS PRO PRO GLU PHE SER ILE VAL MET GLU SEQRES 9 A 295 TYR CYS GLU LEU GLY THR LEU ARG GLU LEU LEU ASP ARG SEQRES 10 A 295 ASP LYS ASP LEU THR MET SER VAL ARG SER LEU LEU VAL SEQRES 11 A 295 LEU ARG ALA ALA ARG GLY LEU TYR ARG LEU HIS HIS SER SEQRES 12 A 295 GLY THR LEU HIS GLY ASN ILE SER SER SER SER PHE LEU SEQRES 13 A 295 VAL ALA GLY GLY TYR GLN VAL LYS LEU ALA GLY PHE GLU SEQRES 14 A 295 LEU SER LYS THR GLN THR SER ILE SER ARG ALA THR LYS SEQRES 15 A 295 SER THR LYS ALA GLU ARG PHE SER SER THR ALA TYR VAL SEQRES 16 A 295 SER PRO GLU ARG LEU GLN ASP PRO PHE CYS LYS TYR ASP SEQRES 17 A 295 THR LYS ALA GLU ILE TYR SER PHE GLY ILE VAL LEU TRP SEQRES 18 A 295 GLU ILE ALA THR GLY LYS ILE PRO PHE GLU GLY CYS ASP SEQRES 19 A 295 SER GLU LYS ILE TYR GLU LEU VAL ALA GLU ASN LYS LYS SEQRES 20 A 295 GLN GLU PRO VAL GLY GLN ASP CYS PRO GLU LEU LEU GLN SEQRES 21 A 295 GLU ILE ILE ASN GLU CYS ARG ALA HIS GLU PRO SER ASN SEQRES 22 A 295 ARG PRO SER ALA ASP GLY ILE LEU GLU ARG LEU PRO ALA SEQRES 23 A 295 ILE GLU ASP SER MET ASP LYS LYS LEU SEQRES 1 B 295 GLY ALA MET GLY SER GLN GLU VAL PRO GLN ASP PHE GLN SEQRES 2 B 295 VAL LYS GLU ILE PRO LYS GLU ASP LEU GLY TYR PRO TRP SEQRES 3 B 295 THR LYS LEU LYS THR ASN LYS LEU SER THR ILE TYR ARG SEQRES 4 B 295 GLY GLU TYR TYR LYS SER PRO VAL THR ILE LYS VAL PHE SEQRES 5 B 295 ASN ASN PRO LYS ALA GLU SER VAL GLY ILE VAL ARG LEU SEQRES 6 B 295 THR PHE ASN GLU GLU ILE LYS THR MET LYS LYS PHE ASP SEQRES 7 B 295 SER PRO ASN ILE LEU ARG ILE PHE GLY ILE CYS ILE ASP SEQRES 8 B 295 GLN THR VAL LYS PRO PRO GLU PHE SER ILE VAL MET GLU SEQRES 9 B 295 TYR CYS GLU LEU GLY THR LEU ARG GLU LEU LEU ASP ARG SEQRES 10 B 295 ASP LYS ASP LEU THR MET SER VAL ARG SER LEU LEU VAL SEQRES 11 B 295 LEU ARG ALA ALA ARG GLY LEU TYR ARG LEU HIS HIS SER SEQRES 12 B 295 GLY THR LEU HIS GLY ASN ILE SER SER SER SER PHE LEU SEQRES 13 B 295 VAL ALA GLY GLY TYR GLN VAL LYS LEU ALA GLY PHE GLU SEQRES 14 B 295 LEU SER LYS THR GLN THR SER ILE SER ARG ALA THR LYS SEQRES 15 B 295 SER THR LYS ALA GLU ARG PHE SER SER THR ALA TYR VAL SEQRES 16 B 295 SER PRO GLU ARG LEU GLN ASP PRO PHE CYS LYS TYR ASP SEQRES 17 B 295 THR LYS ALA GLU ILE TYR SER PHE GLY ILE VAL LEU TRP SEQRES 18 B 295 GLU ILE ALA THR GLY LYS ILE PRO PHE GLU GLY CYS ASP SEQRES 19 B 295 SER GLU LYS ILE TYR GLU LEU VAL ALA GLU ASN LYS LYS SEQRES 20 B 295 GLN GLU PRO VAL GLY GLN ASP CYS PRO GLU LEU LEU GLN SEQRES 21 B 295 GLU ILE ILE ASN GLU CYS ARG ALA HIS GLU PRO SER ASN SEQRES 22 B 295 ARG PRO SER ALA ASP GLY ILE LEU GLU ARG LEU PRO ALA SEQRES 23 B 295 ILE GLU ASP SER MET ASP LYS LYS LEU HET MN A 501 1 HET MN A 502 1 HET MN A 503 1 HET MN B 501 1 HET MN B 502 1 HET MN B 503 1 HETNAM MN MANGANESE (II) ION FORMUL 3 MN 6(MN 2+) FORMUL 9 HOH *184(H2 O) HELIX 1 AA1 PRO A 187 LEU A 191 5 5 HELIX 2 AA2 SER A 228 PHE A 246 1 19 HELIX 3 AA3 THR A 279 ASP A 287 1 9 HELIX 4 AA4 THR A 291 SER A 312 1 22 HELIX 5 AA5 SER A 359 VAL A 364 5 6 HELIX 6 AA6 SER A 365 ASP A 371 1 7 HELIX 7 AA7 ASP A 377 GLY A 395 1 19 HELIX 8 AA8 ASP A 403 GLU A 413 1 11 HELIX 9 AA9 PRO A 425 ARG A 436 1 12 HELIX 10 AB1 GLU A 439 ARG A 443 5 5 HELIX 11 AB2 SER A 445 ARG A 452 1 8 HELIX 12 AB3 PRO B 187 LEU B 191 5 5 HELIX 13 AB4 SER B 228 PHE B 246 1 19 HELIX 14 AB5 THR B 279 ASP B 287 1 9 HELIX 15 AB6 THR B 291 HIS B 311 1 21 HELIX 16 AB7 GLY B 328 TYR B 330 5 3 HELIX 17 AB8 SER B 359 VAL B 364 5 6 HELIX 18 AB9 SER B 365 ASP B 371 1 7 HELIX 19 AC1 ASP B 377 GLY B 395 1 19 HELIX 20 AC2 ASP B 403 ALA B 412 1 10 HELIX 21 AC3 PRO B 425 ARG B 436 1 12 HELIX 22 AC4 GLU B 439 ARG B 443 5 5 HELIX 23 AC5 SER B 445 ARG B 452 1 8 SHEET 1 AA1 5 THR A 196 THR A 200 0 SHEET 2 AA1 5 THR A 205 TYR A 211 -1 O ILE A 206 N LEU A 198 SHEET 3 AA1 5 SER A 214 VAL A 220 -1 O VAL A 216 N GLY A 209 SHEET 4 AA1 5 GLU A 267 GLU A 273 -1 O MET A 272 N THR A 217 SHEET 5 AA1 5 ILE A 254 ASP A 260 -1 N ASP A 260 O GLU A 267 SHEET 1 AA2 2 PHE A 324 ALA A 327 0 SHEET 2 AA2 2 GLN A 331 LEU A 334 -1 O LYS A 333 N LEU A 325 SHEET 1 AA3 5 THR B 196 THR B 200 0 SHEET 2 AA3 5 THR B 205 TYR B 211 -1 O ILE B 206 N LYS B 199 SHEET 3 AA3 5 SER B 214 VAL B 220 -1 O VAL B 220 N THR B 205 SHEET 4 AA3 5 GLU B 267 GLU B 273 -1 O MET B 272 N THR B 217 SHEET 5 AA3 5 ILE B 254 ASP B 260 -1 N ASP B 260 O GLU B 267 SHEET 1 AA4 2 PHE B 324 ALA B 327 0 SHEET 2 AA4 2 GLN B 331 LEU B 334 -1 O LYS B 333 N LEU B 325 LINK OD1 ASP A 371 MN MN A 502 1555 1555 2.54 LINK OD2 ASP A 377 MN MN A 501 1555 1555 2.25 LINK OE2 GLU A 426 MN MN A 503 1555 1555 2.15 LINK OE2 GLU A 430 MN MN A 503 1555 1555 2.21 LINK MN MN A 502 O HOH A 698 1555 1555 2.65 LINK MN MN A 503 O HOH A 601 1555 1555 2.60 LINK MN MN A 503 O HOH A 651 1555 1555 2.14 LINK MN MN A 503 O HOH A 686 1555 1555 2.46 LINK MN MN A 503 NE2 HIS B 438 6555 1555 2.20 LINK NE2 HIS B 311 MN MN B 501 1555 1555 2.49 LINK OD2 ASP B 371 MN MN B 503 1555 1555 2.29 LINK OE2 GLU B 405 MN MN B 502 1555 1555 2.23 LINK OE2 GLU B 409 MN MN B 502 1555 1555 2.16 LINK MN MN B 503 O HOH B 639 1555 1555 2.69 LINK MN MN B 503 O HOH B 669 1555 1555 2.28 LINK MN MN B 503 O HOH B 679 1555 1555 2.45 CISPEP 1 TYR A 193 PRO A 194 0 -2.99 CISPEP 2 LYS A 264 PRO A 265 0 0.43 CISPEP 3 TYR B 193 PRO B 194 0 2.76 CISPEP 4 LYS B 264 PRO B 265 0 -7.00 SITE 1 AC1 1 ASP A 377 SITE 1 AC2 3 ASP A 371 HOH A 606 HOH A 698 SITE 1 AC3 6 GLU A 426 GLU A 430 HOH A 601 HOH A 651 SITE 2 AC3 6 HOH A 686 HIS B 438 SITE 1 AC4 2 ASP A 190 HIS B 311 SITE 1 AC5 2 GLU B 405 GLU B 409 SITE 1 AC6 5 GLU B 185 ASP B 371 HOH B 639 HOH B 669 SITE 2 AC6 5 HOH B 679 CRYST1 190.057 190.057 77.759 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005262 0.003038 0.000000 0.00000 SCALE2 0.000000 0.006076 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012860 0.00000