data_6VC1 # _entry.id 6VC1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.342 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6VC1 WWPDB D_1000246043 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6VC1 _pdbx_database_status.recvd_initial_deposition_date 2019-12-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Spiliopoulou, M.' 1 0000-0002-4537-9769 'Karavassili, F.' 2 0000-0003-4505-6131 'Triandafillidis, D.' 3 0000-0003-4242-7785 'Valmas, A.' 4 0000-0003-1696-0551 'Kosinas, C.' 5 0000-0002-5479-7858 'Fili, S.' 6 0000-0002-4982-5025 'Barlos, K.' 7 ? 'Barlos, K.K.' 8 ? 'Morin, M.' 9 0000-0002-9693-358X 'Reinle-Schmitt, M.' 10 0000-0003-3382-3751 'Gozzo, F.' 11 0000-0002-3697-3491 'Margiolaki, I.' 12 0000-0003-4455-6054 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acta Crystallogr.,Sect.A' _citation.journal_id_ASTM ACSAD7 _citation.journal_id_CSD ? _citation.journal_id_ISSN 2053-2733 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 77 _citation.language ? _citation.page_first 186 _citation.page_last 195 _citation.title ;New perspectives in macromolecular powder diffraction using single-photon-counting strip detectors: high-resolution structure of the pharmaceutical peptide octreotide. ; _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1107/S2053273321001698 _citation.pdbx_database_id_PubMed 33944797 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Spiliopoulou, M.' 1 0000-0002-4537-9769 primary 'Karavassili, F.' 2 0000-0003-4505-6131 primary 'Triandafillidis, D.P.' 3 0000-0003-4242-7785 primary 'Valmas, A.' 4 0000-0003-1696-0551 primary 'Fili, S.' 5 ? primary 'Kosinas, C.' 6 0000-0002-5479-7858 primary 'Barlos, K.' 7 ? primary 'Barlos, K.K.' 8 ? primary 'Morin, M.' 9 0000-0002-9693-358X primary 'Reinle-Schmitt, M.L.' 10 0000-0003-3382-3751 primary 'Gozzo, F.' 11 0000-0002-3697-3491 primary 'Margiolaki, I.' 12 0000-0003-4455-6054 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6VC1 _cell.details ? _cell.formula_units_Z ? _cell.length_a 18.529 _cell.length_a_esd ? _cell.length_b 30.288 _cell.length_b_esd ? _cell.length_c 39.731 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VC1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn Octreotide 1036.246 3 ? ? ? ? 2 non-polymer syn 'OXALATE ION' 88.019 1 ? ? ? ? 3 water nat water 18.015 31 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DPN)CF(DTR)KTCT' _entity_poly.pdbx_seq_one_letter_code_can FCFWKTCT _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DPN n 1 2 CYS n 1 3 PHE n 1 4 DTR n 1 5 LYS n 1 6 THR n 1 7 CYS n 1 8 THR n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 8 _pdbx_entity_src_syn.organism_scientific unidentified _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32644 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6VC1 _struct_ref.pdbx_db_accession 6VC1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6VC1 A 1 ? 8 ? 6VC1 1 ? 8 ? 1 8 2 1 6VC1 B 1 ? 8 ? 6VC1 1 ? 8 ? 1 8 3 1 6VC1 C 1 ? 8 ? 6VC1 1 ? 8 ? 1 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DPN 'D-peptide linking' . D-PHENYLALANINE ? 'C9 H11 N O2' 165.189 DTR 'D-peptide linking' . D-TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 HOH non-polymer . WATER ? 'H2 O' 18.015 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 OXL non-polymer . 'OXALATE ION' ? 'C2 O4 -2' 88.019 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6VC1 _exptl.crystals_number 2 _exptl.details ? _exptl.method 'POWDER DIFFRACTION' _exptl.method_details ? # loop_ _exptl_crystal.colour _exptl_crystal.density_diffrn _exptl_crystal.density_Matthews _exptl_crystal.density_method _exptl_crystal.density_percent_sol _exptl_crystal.description _exptl_crystal.F_000 _exptl_crystal.id _exptl_crystal.preparation _exptl_crystal.size_max _exptl_crystal.size_mid _exptl_crystal.size_min _exptl_crystal.size_rad _exptl_crystal.colour_lustre _exptl_crystal.colour_modifier _exptl_crystal.colour_primary _exptl_crystal.density_meas _exptl_crystal.density_meas_esd _exptl_crystal.density_meas_gt _exptl_crystal.density_meas_lt _exptl_crystal.density_meas_temp _exptl_crystal.density_meas_temp_esd _exptl_crystal.density_meas_temp_gt _exptl_crystal.density_meas_temp_lt _exptl_crystal.pdbx_crystal_image_url _exptl_crystal.pdbx_crystal_image_format _exptl_crystal.pdbx_mosaicity _exptl_crystal.pdbx_mosaicity_esd ? ? 1.82 ? 32.5 ? ? 1 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? 32.5 ? ? 2 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _exptl_crystal_grow.apparatus _exptl_crystal_grow.atmosphere _exptl_crystal_grow.crystal_id _exptl_crystal_grow.details _exptl_crystal_grow.method _exptl_crystal_grow.method_ref _exptl_crystal_grow.pH _exptl_crystal_grow.pressure _exptl_crystal_grow.pressure_esd _exptl_crystal_grow.seeding _exptl_crystal_grow.seeding_ref _exptl_crystal_grow.temp _exptl_crystal_grow.temp_details _exptl_crystal_grow.temp_esd _exptl_crystal_grow.time _exptl_crystal_grow.pdbx_details _exptl_crystal_grow.pdbx_pH_range ? ? 1 ? 'EVAPORATION, RECRYSTALLIZATION' ? ? ? ? ? ? 298 ? ? ? ;0.2 M oxalic acid 434 mg mL-1 octreotide acetate 322.8 K until almost complete evaporation Redesolution in ddH2O 298 K until almost complete evaporation Repeat until crystal formation ; ? ? ? 2 ? 'EVAPORATION, RECRYSTALLIZATION' ? ? ? ? ? ? 298 ? ? ? ;0.2 M oxalic acid 500 mg mL-1 octreotide acetate 322.8 K until almost complete evaporation Redesolution in ddH2O 298 K until almost complete evaporation Repeat until crystal formation ; ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 293 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MYTHEN II Silicon Solid State 1D detector system' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-09-12 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.3004392 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SLS BEAMLINE X04SA' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.3004392 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6VC1 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high ? _reflns.d_resolution_low ? _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs ? _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs ? _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI ? _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high . _reflns_shell.d_res_low ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _struct.entry_id 6VC1 _struct.title 'Octreotide oxalate' _struct.pdbx_descriptor Octreotide _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6VC1 _struct_keywords.text 'octreotide, de novo protein; somatostatin-14 analogue, DE NOVO PROTEIN' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LYS B 5 ? CYS B 7 ? LYS B 5 CYS B 7 5 ? 3 HELX_P HELX_P2 AA2 PHE C 3 ? THR C 8 ? PHE C 3 THR C 8 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 2 SG ? ? ? 1_555 A CYS 7 SG ? ? A CYS 2 A CYS 7 1_555 ? ? ? ? ? ? ? 1.992 ? ? disulf2 disulf ? ? B CYS 2 SG ? ? ? 1_555 B CYS 7 SG ? ? B CYS 2 B CYS 7 1_555 ? ? ? ? ? ? ? 2.050 ? ? disulf3 disulf ? ? C CYS 2 SG ? ? ? 1_555 C CYS 7 SG ? ? C CYS 2 C CYS 7 1_555 ? ? ? ? ? ? ? 2.029 ? ? covale1 covale both ? A DPN 1 C ? ? ? 1_555 A CYS 2 N ? ? A DPN 1 A CYS 2 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale both ? A PHE 3 C ? ? ? 1_555 A DTR 4 N ? ? A PHE 3 A DTR 4 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale3 covale both ? A DTR 4 C ? ? ? 1_555 A LYS 5 N ? ? A DTR 4 A LYS 5 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale4 covale both ? B DPN 1 C ? ? ? 1_555 B CYS 2 N ? ? B DPN 1 B CYS 2 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale5 covale both ? B PHE 3 C ? ? ? 1_555 B DTR 4 N ? ? B PHE 3 B DTR 4 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale6 covale both ? B DTR 4 C ? ? ? 1_555 B LYS 5 N ? ? B DTR 4 B LYS 5 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale7 covale both ? C DPN 1 C ? ? ? 1_555 C CYS 2 N ? ? C DPN 1 C CYS 2 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale8 covale both ? C PHE 3 C ? ? ? 1_555 C DTR 4 N ? ? C PHE 3 C DTR 4 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale9 covale both ? C DTR 4 C ? ? ? 1_555 C LYS 5 N ? ? C DTR 4 C LYS 5 1_555 ? ? ? ? ? ? ? 1.326 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 CYS A 2 ? PHE A 3 ? CYS A 2 PHE A 3 AA1 2 THR A 6 ? CYS A 7 ? THR A 6 CYS A 7 AA1 3 CYS B 2 ? PHE B 3 ? CYS B 2 PHE B 3 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N PHE A 3 ? N PHE A 3 O THR A 6 ? O THR A 6 AA1 2 3 N CYS A 7 ? N CYS A 7 O CYS B 2 ? O CYS B 2 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A OXL 101 ? 6 'binding site for residue OXL A 101' AC2 Software B DPN 1 ? 7 'binding site for Di-peptide DPN B 1 and CYS B 2' AC3 Software B PHE 3 ? 9 'binding site for Di-peptide PHE B 3 and DTR B 4' AC4 Software B DTR 4 ? 8 'binding site for Di-peptide DTR B 4 and LYS B 5' AC5 Software C DPN 1 ? 8 'binding site for Di-peptide DPN C 1 and CYS C 2' AC6 Software C PHE 3 ? 7 'binding site for Di-peptide PHE C 3 and DTR C 4' AC7 Software C DTR 4 ? 9 'binding site for Di-peptide DTR C 4 and LYS C 5' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 PHE A 3 ? PHE A 3 . ? 1_555 ? 2 AC1 6 THR A 8 ? THR A 8 . ? 1_555 ? 3 AC1 6 HOH E . ? HOH A 202 . ? 1_555 ? 4 AC1 6 HOH E . ? HOH A 203 . ? 1_555 ? 5 AC1 6 HOH E . ? HOH A 205 . ? 1_555 ? 6 AC1 6 HOH E . ? HOH A 206 . ? 1_555 ? 7 AC2 7 THR A 6 ? THR A 6 . ? 1_555 ? 8 AC2 7 CYS A 7 ? CYS A 7 . ? 1_555 ? 9 AC2 7 THR A 8 ? THR A 8 . ? 1_555 ? 10 AC2 7 PHE B 3 ? PHE B 3 . ? 1_555 ? 11 AC2 7 THR B 6 ? THR B 6 . ? 1_555 ? 12 AC2 7 CYS B 7 ? CYS B 7 . ? 1_555 ? 13 AC2 7 HOH F . ? HOH B 102 . ? 1_555 ? 14 AC3 9 LYS A 5 ? LYS A 5 . ? 1_555 ? 15 AC3 9 THR A 6 ? THR A 6 . ? 1_555 ? 16 AC3 9 CYS B 2 ? CYS B 2 . ? 1_555 ? 17 AC3 9 LYS B 5 ? LYS B 5 . ? 1_555 ? 18 AC3 9 THR B 6 ? THR B 6 . ? 1_555 ? 19 AC3 9 CYS B 7 ? CYS B 7 . ? 1_555 ? 20 AC3 9 HOH F . ? HOH B 104 . ? 1_555 ? 21 AC3 9 PHE C 3 ? PHE C 3 . ? 1_555 ? 22 AC3 9 DTR C 4 ? DTR C 4 . ? 1_555 ? 23 AC4 8 LYS A 5 ? LYS A 5 . ? 1_555 ? 24 AC4 8 PHE B 3 ? PHE B 3 . ? 1_555 ? 25 AC4 8 THR B 6 ? THR B 6 . ? 1_555 ? 26 AC4 8 CYS B 7 ? CYS B 7 . ? 1_555 ? 27 AC4 8 THR B 8 ? THR B 8 . ? 1_555 ? 28 AC4 8 HOH F . ? HOH B 104 . ? 1_555 ? 29 AC4 8 PHE C 3 ? PHE C 3 . ? 1_555 ? 30 AC4 8 DTR C 4 ? DTR C 4 . ? 1_555 ? 31 AC5 8 CYS A 2 ? CYS A 2 . ? 1_555 ? 32 AC5 8 PHE A 3 ? PHE A 3 . ? 1_555 ? 33 AC5 8 DTR A 4 ? DTR A 4 . ? 1_555 ? 34 AC5 8 HOH E . ? HOH A 203 . ? 1_555 ? 35 AC5 8 PHE C 3 ? PHE C 3 . ? 1_555 ? 36 AC5 8 CYS C 7 ? CYS C 7 . ? 1_555 ? 37 AC5 8 HOH G . ? HOH C 105 . ? 1_555 ? 38 AC5 8 HOH G . ? HOH C 107 . ? 1_555 ? 39 AC6 7 DTR A 4 ? DTR A 4 . ? 1_555 ? 40 AC6 7 LYS A 5 ? LYS A 5 . ? 1_555 ? 41 AC6 7 DTR B 4 ? DTR B 4 . ? 1_555 ? 42 AC6 7 CYS C 2 ? CYS C 2 . ? 1_555 ? 43 AC6 7 LYS C 5 ? LYS C 5 . ? 1_555 ? 44 AC6 7 THR C 6 ? THR C 6 . ? 1_555 ? 45 AC6 7 CYS C 7 ? CYS C 7 . ? 1_555 ? 46 AC7 9 DTR A 4 ? DTR A 4 . ? 1_555 ? 47 AC7 9 LYS A 5 ? LYS A 5 . ? 1_555 ? 48 AC7 9 DTR B 4 ? DTR B 4 . ? 1_555 ? 49 AC7 9 PHE C 3 ? PHE C 3 . ? 1_555 ? 50 AC7 9 THR C 6 ? THR C 6 . ? 1_555 ? 51 AC7 9 CYS C 7 ? CYS C 7 . ? 1_555 ? 52 AC7 9 THR C 8 ? THR C 8 . ? 1_555 ? 53 AC7 9 HOH G . ? HOH C 101 . ? 1_555 ? 54 AC7 9 HOH G . ? HOH C 104 . ? 1_555 ? # _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[3] 0.00000 _database_PDB_matrix.entry_id 6VC1 # _atom_sites.entry_id 6VC1 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.053970 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.033016 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025169 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DPN 1 1 1 DPN DPN A . n A 1 2 CYS 2 2 2 CYS CYS A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 DTR 4 4 4 DTR DTR A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 THR 6 6 6 THR THR A . n A 1 7 CYS 7 7 7 CYS CYS A . n A 1 8 THR 8 8 8 THR THR A . n B 1 1 DPN 1 1 1 DPN DPN B . n B 1 2 CYS 2 2 2 CYS CYS B . n B 1 3 PHE 3 3 3 PHE PHE B . n B 1 4 DTR 4 4 4 DTR DTR B . n B 1 5 LYS 5 5 5 LYS LYS B . n B 1 6 THR 6 6 6 THR THR B . n B 1 7 CYS 7 7 7 CYS CYS B . n B 1 8 THR 8 8 8 THR THR B . n C 1 1 DPN 1 1 1 DPN DPN C . n C 1 2 CYS 2 2 2 CYS CYS C . n C 1 3 PHE 3 3 3 PHE PHE C . n C 1 4 DTR 4 4 4 DTR DTR C . n C 1 5 LYS 5 5 5 LYS LYS C . n C 1 6 THR 6 6 6 THR THR C . n C 1 7 CYS 7 7 7 CYS CYS C . n C 1 8 THR 8 8 8 THR THR C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 OXL 1 101 51 OXL OXL A . E 3 HOH 1 201 47 HOH HOH A . E 3 HOH 2 202 19 HOH HOH A . E 3 HOH 3 203 46 HOH HOH A . E 3 HOH 4 204 8 HOH HOH A . E 3 HOH 5 205 10 HOH HOH A . E 3 HOH 6 206 48 HOH HOH A . E 3 HOH 7 207 33 HOH HOH A . E 3 HOH 8 208 38 HOH HOH A . E 3 HOH 9 209 24 HOH HOH A . E 3 HOH 10 210 27 HOH HOH A . F 3 HOH 1 101 4 HOH HOH B . F 3 HOH 2 102 42 HOH HOH B . F 3 HOH 3 103 29 HOH HOH B . F 3 HOH 4 104 18 HOH HOH B . F 3 HOH 5 105 49 HOH HOH B . G 3 HOH 1 101 1 HOH HOH C . G 3 HOH 2 102 39 HOH HOH C . G 3 HOH 3 103 14 HOH HOH C . G 3 HOH 4 104 37 HOH HOH C . G 3 HOH 5 105 12 HOH HOH C . G 3 HOH 6 106 16 HOH HOH C . G 3 HOH 7 107 45 HOH HOH C . G 3 HOH 8 108 43 HOH HOH C . G 3 HOH 9 109 40 HOH HOH C . G 3 HOH 10 110 2 HOH HOH C . G 3 HOH 11 111 36 HOH HOH C . G 3 HOH 12 112 44 HOH HOH C . G 3 HOH 13 113 41 HOH HOH C . G 3 HOH 14 114 22 HOH HOH C . G 3 HOH 15 115 35 HOH HOH C . G 3 HOH 16 116 15 HOH HOH C . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D,E 2 1 B,F 3 1 C,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-12-23 2 'Structure model' 1 1 2021-05-19 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' 13 2 'Structure model' '_citation_author.identifier_ORCID' 14 2 'Structure model' '_citation_author.name' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author 'A.C. Larson, R.B. Von Dreele' _software.contact_author_email ? _software.date 2014 _software.description 'General Structure Analysis System' _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name GSAS _software.os ? _software.os_version ? _software.type ? _software.version . _software.pdbx_ordinal 1 # _pdbx_database_remark.id 250 _pdbx_database_remark.text ; REFINEMENT. PROGRAM : GSAS AUTHORS : LARSON & VON DREELE DATA USED IN REFINEMENT RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 RESOLUTION RANGE LOW (ANGSTROMS) : 74.45 POWDER DIFFRACTION DATA. FIT TO DATA USED IN REFINEMENT NUMBER OF POWDER PATTERNS : 2 PROFILE R VALUES (%) : 6.29 5.61 WEIGHTED PROFILE R VALUES (%) : 8.44 7.40 F**2 R VALUES (%) : 45.95 43.29 NUMBERS OF POWDER PATTERN POINTS : 30815 29392 NUMBERS OF REFLECTIONS : 4926 4876 TOTAL NUMBER OF POWDER POINTS : 60207 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. PROTEIN ATOMS : NUCLEIC ACID ATOMS : HETEROGEN ATOMS : SOLVENT ATOMS : MODEL REFINEMENT. NUMBER OF LEAST-SQUARES PARAMETERS : 48 NUMBER OF RESTRAINTS : 968 LEAST-SQUARES MATRIX BAND WIDTH : 48 MARQUARDT COEFFICIENT : 8.49 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. NUMBER. INTERATOMIC DISTANCES (A) :0.014 300 BOND ANGLES (DEG) : 1.61 375 DISTANCES FROM RESTRAINT PLANES (A) :0.015 108 TORSION ANGLE RESTRAINTS (E) : 0.53 45 CHIRAL VOLUMES (A**3) :0.106 30 TORSION PSEUDOPOTENTIAL RESTRAINTS (E) : 4.22 23 ANTI-BUMPING DISTANCE RESTRAINTS (A) :0.029 50 HYDROGEN BOND DISTANCE RESTRAINTS (A) :0.345 37 ; # _pdbx_entry_details.entry_id 6VC1 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Hellenic Foundation for Research and Innovation (HFRI)' Greece 3051 1 'General Secretariat for Research and Technology (GSRT)' Greece ? 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'OXALATE ION' OXL 3 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -x+1/2,-y,z+1/2 3 x+1/2,-y+1/2,-z 4 -x,y+1/2,-z+1/2 #