HEADER TRANSFERASE 23-DEC-19 6VCZ TITLE CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA S-ADENOSYLMETHIONINE TITLE 2 SYNTHASE 2 (ATMAT2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: S-ADENOSYLMETHIONINE SYNTHASE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ADOMET SYNTHASE 2,METHIONINE ADENOSYLTRANSFERASE 2,MAT 2; COMPND 5 EC: 2.5.1.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 TISSUE: LEAVES; SOURCE 6 GENE: SAM2, AT4G01850, T7B11.11; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG68 KEYWDS METHIONINE ADENOSYLTRANSFERASE, SAM SYNTHASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.SEKULA,M.RUSZKOWSKI,Z.DAUTER REVDAT 3 11-OCT-23 6VCZ 1 LINK REVDAT 2 11-MAR-20 6VCZ 1 JRNL REVDAT 1 26-FEB-20 6VCZ 0 JRNL AUTH B.SEKULA,M.RUSZKOWSKI,Z.DAUTER JRNL TITL S-ADENOSYLMETHIONINE SYNTHASES IN PLANTS: STRUCTURAL JRNL TITL 2 CHARACTERIZATION OF TYPE I AND II ISOENZYMES FROM JRNL TITL 3 ARABIDOPSIS THALIANA AND MEDICAGO TRUNCATULA. JRNL REF INT.J.BIOL.MACROMOL. V. 151 554 2020 JRNL REFN ISSN 0141-8130 JRNL PMID 32057875 JRNL DOI 10.1016/J.IJBIOMAC.2020.02.100 REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 152562 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1542 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.52 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 11122 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 113 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5868 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 95 REMARK 3 SOLVENT ATOMS : 1014 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.32000 REMARK 3 B22 (A**2) : -0.31000 REMARK 3 B33 (A**2) : 0.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.35000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.058 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.460 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6215 ; 0.020 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5830 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8433 ; 2.003 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13588 ; 1.552 ; 1.586 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 830 ;18.989 ; 5.398 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 302 ;32.563 ;22.517 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1061 ;13.370 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;15.124 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 826 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7523 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1247 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 34 REMARK 3 ORIGIN FOR THE GROUP (A): 23.741 7.305 9.929 REMARK 3 T TENSOR REMARK 3 T11: 0.0587 T22: 0.0545 REMARK 3 T33: 0.0422 T12: 0.0128 REMARK 3 T13: -0.0100 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.3631 L22: 0.2427 REMARK 3 L33: 0.3619 L12: -0.1502 REMARK 3 L13: 0.0782 L23: -0.2275 REMARK 3 S TENSOR REMARK 3 S11: 0.0308 S12: 0.0994 S13: -0.0563 REMARK 3 S21: -0.0102 S22: -0.0159 S23: 0.0169 REMARK 3 S31: 0.0445 S32: 0.0228 S33: -0.0149 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 90 REMARK 3 ORIGIN FOR THE GROUP (A): 9.375 12.249 2.046 REMARK 3 T TENSOR REMARK 3 T11: 0.0414 T22: 0.1072 REMARK 3 T33: 0.0404 T12: 0.0328 REMARK 3 T13: -0.0226 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 0.4489 L22: 1.2941 REMARK 3 L33: 0.3479 L12: 0.3004 REMARK 3 L13: 0.0591 L23: -0.2847 REMARK 3 S TENSOR REMARK 3 S11: 0.0834 S12: 0.1198 S13: 0.0329 REMARK 3 S21: -0.0159 S22: -0.0420 S23: 0.1183 REMARK 3 S31: 0.0134 S32: -0.0684 S33: -0.0414 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): 15.528 28.154 5.884 REMARK 3 T TENSOR REMARK 3 T11: 0.0552 T22: 0.0673 REMARK 3 T33: 0.0992 T12: 0.0192 REMARK 3 T13: 0.0203 T23: 0.0257 REMARK 3 L TENSOR REMARK 3 L11: 0.3443 L22: 0.1447 REMARK 3 L33: 0.3161 L12: 0.0172 REMARK 3 L13: -0.0893 L23: 0.1745 REMARK 3 S TENSOR REMARK 3 S11: 0.0958 S12: 0.0075 S13: 0.1159 REMARK 3 S21: -0.0319 S22: -0.0689 S23: 0.0407 REMARK 3 S31: -0.0886 S32: -0.1029 S33: -0.0269 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 124 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): 32.961 3.707 9.221 REMARK 3 T TENSOR REMARK 3 T11: 0.0503 T22: 0.0616 REMARK 3 T33: 0.0645 T12: 0.0231 REMARK 3 T13: 0.0123 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.1183 L22: 0.2473 REMARK 3 L33: 0.2920 L12: 0.1416 REMARK 3 L13: 0.0526 L23: 0.0734 REMARK 3 S TENSOR REMARK 3 S11: 0.0156 S12: 0.0263 S13: -0.0107 REMARK 3 S21: -0.0197 S22: -0.0155 S23: -0.0460 REMARK 3 S31: 0.0376 S32: 0.0335 S33: -0.0001 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 158 A 179 REMARK 3 ORIGIN FOR THE GROUP (A): 27.938 -5.569 10.282 REMARK 3 T TENSOR REMARK 3 T11: 0.0744 T22: 0.0272 REMARK 3 T33: 0.1009 T12: 0.0136 REMARK 3 T13: -0.0002 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.0679 L22: 0.2242 REMARK 3 L33: 0.3474 L12: -0.0222 REMARK 3 L13: 0.0627 L23: 0.1754 REMARK 3 S TENSOR REMARK 3 S11: 0.0423 S12: -0.0008 S13: -0.0555 REMARK 3 S21: -0.0170 S22: -0.0217 S23: -0.0244 REMARK 3 S31: 0.1021 S32: -0.0234 S33: -0.0206 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 180 A 232 REMARK 3 ORIGIN FOR THE GROUP (A): 31.640 -11.056 11.508 REMARK 3 T TENSOR REMARK 3 T11: 0.0699 T22: 0.0114 REMARK 3 T33: 0.0803 T12: 0.0204 REMARK 3 T13: -0.0005 T23: -0.0192 REMARK 3 L TENSOR REMARK 3 L11: 0.8774 L22: 0.4865 REMARK 3 L33: 0.8123 L12: 0.4110 REMARK 3 L13: 0.3998 L23: 0.3549 REMARK 3 S TENSOR REMARK 3 S11: -0.0072 S12: 0.0390 S13: -0.1413 REMARK 3 S21: 0.0229 S22: 0.0269 S23: -0.0824 REMARK 3 S31: 0.1727 S32: 0.0491 S33: -0.0197 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 233 A 329 REMARK 3 ORIGIN FOR THE GROUP (A): 30.696 14.862 14.537 REMARK 3 T TENSOR REMARK 3 T11: 0.0394 T22: 0.0579 REMARK 3 T33: 0.0634 T12: 0.0022 REMARK 3 T13: 0.0091 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.1421 L22: 0.1032 REMARK 3 L33: 0.1424 L12: -0.0106 REMARK 3 L13: 0.0502 L23: 0.0469 REMARK 3 S TENSOR REMARK 3 S11: 0.0150 S12: 0.0398 S13: 0.0079 REMARK 3 S21: -0.0126 S22: 0.0026 S23: -0.0215 REMARK 3 S31: 0.0057 S32: 0.0095 S33: -0.0176 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 330 A 366 REMARK 3 ORIGIN FOR THE GROUP (A): 35.379 24.291 6.934 REMARK 3 T TENSOR REMARK 3 T11: 0.0483 T22: 0.0601 REMARK 3 T33: 0.0699 T12: -0.0052 REMARK 3 T13: 0.0190 T23: 0.0411 REMARK 3 L TENSOR REMARK 3 L11: 0.5427 L22: 0.2263 REMARK 3 L33: 0.2462 L12: -0.2430 REMARK 3 L13: -0.1641 L23: 0.2228 REMARK 3 S TENSOR REMARK 3 S11: 0.0725 S12: 0.0927 S13: 0.0684 REMARK 3 S21: -0.0563 S22: -0.0133 S23: -0.0727 REMARK 3 S31: -0.0428 S32: 0.0143 S33: -0.0592 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 367 A 389 REMARK 3 ORIGIN FOR THE GROUP (A): 38.250 15.713 4.319 REMARK 3 T TENSOR REMARK 3 T11: 0.0500 T22: 0.0952 REMARK 3 T33: 0.0376 T12: 0.0006 REMARK 3 T13: 0.0317 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 0.7416 L22: 0.0950 REMARK 3 L33: 0.0578 L12: -0.1929 REMARK 3 L13: 0.0758 L23: 0.0266 REMARK 3 S TENSOR REMARK 3 S11: 0.0335 S12: 0.1485 S13: 0.0060 REMARK 3 S21: -0.0363 S22: -0.0385 S23: -0.0015 REMARK 3 S31: -0.0232 S32: 0.0275 S33: 0.0050 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 64 REMARK 3 ORIGIN FOR THE GROUP (A): 10.768 13.323 26.409 REMARK 3 T TENSOR REMARK 3 T11: 0.0304 T22: 0.0738 REMARK 3 T33: 0.0656 T12: -0.0130 REMARK 3 T13: 0.0116 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.3003 L22: 0.0753 REMARK 3 L33: 0.1819 L12: -0.0979 REMARK 3 L13: -0.0285 L23: -0.0377 REMARK 3 S TENSOR REMARK 3 S11: 0.0053 S12: -0.0590 S13: 0.0330 REMARK 3 S21: 0.0044 S22: 0.0050 S23: 0.0255 REMARK 3 S31: 0.0052 S32: -0.0451 S33: -0.0104 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 65 B 123 REMARK 3 ORIGIN FOR THE GROUP (A): 2.831 11.671 26.034 REMARK 3 T TENSOR REMARK 3 T11: 0.0074 T22: 0.1010 REMARK 3 T33: 0.0674 T12: -0.0187 REMARK 3 T13: 0.0093 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 0.3951 L22: 0.2804 REMARK 3 L33: 0.3934 L12: -0.1261 REMARK 3 L13: 0.1248 L23: -0.2785 REMARK 3 S TENSOR REMARK 3 S11: 0.0093 S12: -0.0930 S13: -0.0117 REMARK 3 S21: -0.0205 S22: 0.0179 S23: 0.0713 REMARK 3 S31: 0.0449 S32: -0.1107 S33: -0.0272 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 124 B 232 REMARK 3 ORIGIN FOR THE GROUP (A): 24.964 30.239 33.214 REMARK 3 T TENSOR REMARK 3 T11: 0.0423 T22: 0.0497 REMARK 3 T33: 0.0707 T12: -0.0070 REMARK 3 T13: -0.0019 T23: -0.0332 REMARK 3 L TENSOR REMARK 3 L11: 0.3332 L22: 0.1549 REMARK 3 L33: 0.3350 L12: -0.1062 REMARK 3 L13: -0.0278 L23: 0.0538 REMARK 3 S TENSOR REMARK 3 S11: 0.0122 S12: -0.0800 S13: 0.0910 REMARK 3 S21: 0.0402 S22: -0.0170 S23: -0.0268 REMARK 3 S31: -0.0359 S32: 0.0128 S33: 0.0048 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 233 B 329 REMARK 3 ORIGIN FOR THE GROUP (A): 25.218 9.962 29.063 REMARK 3 T TENSOR REMARK 3 T11: 0.0547 T22: 0.0576 REMARK 3 T33: 0.0496 T12: -0.0002 REMARK 3 T13: -0.0061 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.1866 L22: 0.1280 REMARK 3 L33: 0.0892 L12: 0.0073 REMARK 3 L13: -0.0601 L23: 0.0545 REMARK 3 S TENSOR REMARK 3 S11: 0.0149 S12: -0.0496 S13: 0.0087 REMARK 3 S21: 0.0182 S22: -0.0067 S23: -0.0075 REMARK 3 S31: 0.0357 S32: -0.0038 S33: -0.0082 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 330 B 366 REMARK 3 ORIGIN FOR THE GROUP (A): 23.108 0.438 37.653 REMARK 3 T TENSOR REMARK 3 T11: 0.0624 T22: 0.1026 REMARK 3 T33: 0.0495 T12: -0.0355 REMARK 3 T13: 0.0005 T23: 0.0469 REMARK 3 L TENSOR REMARK 3 L11: 0.6936 L22: 0.4269 REMARK 3 L33: 0.6014 L12: -0.1714 REMARK 3 L13: -0.1113 L23: 0.4997 REMARK 3 S TENSOR REMARK 3 S11: 0.0502 S12: -0.1854 S13: -0.0065 REMARK 3 S21: 0.1229 S22: -0.0391 S23: -0.0180 REMARK 3 S31: 0.1585 S32: -0.0628 S33: -0.0111 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 367 B 391 REMARK 3 ORIGIN FOR THE GROUP (A): 26.367 8.519 42.210 REMARK 3 T TENSOR REMARK 3 T11: 0.0622 T22: 0.1429 REMARK 3 T33: 0.0135 T12: -0.0337 REMARK 3 T13: 0.0014 T23: 0.0265 REMARK 3 L TENSOR REMARK 3 L11: 0.6470 L22: 0.1518 REMARK 3 L33: 0.3410 L12: 0.0867 REMARK 3 L13: 0.3323 L23: 0.1842 REMARK 3 S TENSOR REMARK 3 S11: 0.0656 S12: -0.1315 S13: -0.0483 REMARK 3 S21: 0.0243 S22: -0.0678 S23: 0.0147 REMARK 3 S31: 0.0330 S32: -0.0580 S33: 0.0022 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6VCZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246070. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 154106 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 42.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.120 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.2600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.96 REMARK 200 R MERGE FOR SHELL (I) : 0.60900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6VCW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.12 M ALCOHOLS (1,6-HEXANEDIOL; 1 REMARK 280 -BUTANOL; 1,2-PROPANEDIOL; 2-PROPANOL; 1,4-BUTANEDIOL; 1,3- REMARK 280 PROPANEDIOL), 0.1 M HEPES AND MOPS BUFFER AT PH 7.5, 20% REMARK 280 MMPEG500, 10% PEG 20000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.63800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -122.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 ASP A 102 REMARK 465 ILE A 103 REMARK 465 ALA A 104 REMARK 465 GLN A 105 REMARK 465 GLY A 106 REMARK 465 VAL A 107 REMARK 465 HIS A 108 REMARK 465 GLY A 109 REMARK 465 HIS A 110 REMARK 465 PHE A 111 REMARK 465 THR A 112 REMARK 465 LYS A 390 REMARK 465 PRO A 391 REMARK 465 GLN A 392 REMARK 465 LEU A 393 REMARK 465 ASN A 394 REMARK 465 ASN A 395 REMARK 465 ILE A 396 REMARK 465 GLY A 397 REMARK 465 SER A 398 REMARK 465 GLY A 399 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 ASP B 102 REMARK 465 ILE B 103 REMARK 465 ALA B 104 REMARK 465 GLN B 105 REMARK 465 GLY B 106 REMARK 465 VAL B 107 REMARK 465 HIS B 108 REMARK 465 GLY B 109 REMARK 465 HIS B 110 REMARK 465 PHE B 111 REMARK 465 THR B 112 REMARK 465 GLN B 392 REMARK 465 LEU B 393 REMARK 465 ASN B 394 REMARK 465 ASN B 395 REMARK 465 ILE B 396 REMARK 465 GLY B 397 REMARK 465 SER B 398 REMARK 465 GLY B 399 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 85 128.61 -174.32 REMARK 500 THR A 258 -94.55 -120.41 REMARK 500 ARG A 280 -63.37 -96.04 REMARK 500 TRP A 388 42.96 -161.78 REMARK 500 THR B 258 -95.29 -118.75 REMARK 500 TYR B 368 33.46 70.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 986 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 987 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 988 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A 989 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A 990 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH A 991 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH A 992 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A 993 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A 994 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A 995 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH A 996 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A 997 DISTANCE = 7.29 ANGSTROMS REMARK 525 HOH A 998 DISTANCE = 8.38 ANGSTROMS REMARK 525 HOH B 996 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH B 997 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B 998 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH B 999 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B1000 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH B1001 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH B1002 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH B1003 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH B1004 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH B1005 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH B1006 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH B1007 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH B1008 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH B1009 DISTANCE = 7.11 ANGSTROMS REMARK 525 HOH B1010 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH B1011 DISTANCE = 7.60 ANGSTROMS REMARK 525 HOH B1012 DISTANCE = 7.64 ANGSTROMS REMARK 525 HOH B1013 DISTANCE = 7.77 ANGSTROMS REMARK 525 HOH B1014 DISTANCE = 8.02 ANGSTROMS REMARK 525 HOH B1015 DISTANCE = 8.39 ANGSTROMS REMARK 525 HOH B1016 DISTANCE = 9.73 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 17 OD2 REMARK 620 2 PO4 A 401 O3 88.7 REMARK 620 3 PO4 A 402 O1 93.7 95.0 REMARK 620 4 HOH A 579 O 88.3 172.0 92.6 REMARK 620 5 HOH A 687 O 85.9 85.5 179.3 86.9 REMARK 620 6 HOH A 699 O 176.5 94.7 87.0 88.3 93.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 407 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 279 OD2 REMARK 620 2 HOH A 608 O 86.8 REMARK 620 3 HOH A 725 O 81.1 82.9 REMARK 620 4 PO4 B 401 O1 168.6 88.8 88.0 REMARK 620 5 PO4 B 402 O1 97.6 173.4 92.9 86.0 REMARK 620 6 HOH B 510 O 98.2 91.0 173.9 92.4 93.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 406 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PO4 A 401 O1 REMARK 620 2 HOH A 522 O 93.5 REMARK 620 3 HOH A 534 O 178.0 87.0 REMARK 620 4 HOH A 538 O 90.7 87.7 87.3 REMARK 620 5 HOH A 574 O 88.0 178.5 91.5 92.3 REMARK 620 6 HOH A 805 O 92.8 86.8 89.2 173.6 93.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 408 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PO4 A 401 O2 REMARK 620 2 PO4 A 402 O2 87.1 REMARK 620 3 HOH A 508 O 91.1 92.1 REMARK 620 4 ASP B 279 OD2 172.0 96.6 95.9 REMARK 620 5 HOH B 601 O 90.7 177.4 89.3 85.4 REMARK 620 6 HOH B 763 O 90.8 94.5 173.2 81.9 84.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 407 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 592 O REMARK 620 2 HOH A 609 O 90.0 REMARK 620 3 HOH A 718 O 87.9 93.9 REMARK 620 4 PO4 B 404 O1 86.8 174.6 90.3 REMARK 620 5 HOH B 535 O 173.1 91.9 85.4 91.8 REMARK 620 6 HOH B 556 O 92.7 86.6 179.2 89.3 94.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 17 OD2 REMARK 620 2 PO4 B 401 O4 89.4 REMARK 620 3 PO4 B 402 O4 91.4 93.1 REMARK 620 4 HOH B 603 O 87.8 174.2 92.1 REMARK 620 5 HOH B 689 O 88.3 86.5 179.5 88.3 REMARK 620 6 HOH B 722 O 174.7 95.2 85.7 87.8 94.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 406 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PO4 B 401 O3 REMARK 620 2 HOH B 536 O 176.1 REMARK 620 3 HOH B 538 O 95.2 86.0 REMARK 620 4 HOH B 606 O 91.4 84.8 94.8 REMARK 620 5 HOH B 639 O 87.6 91.4 175.5 88.6 REMARK 620 6 HOH B 818 O 93.2 90.6 86.1 175.2 90.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGR A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPO B 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MXE B 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGR B 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE B 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE B 413 DBREF 6VCZ A 1 392 UNP P17562 METK2_ARATH 1 392 DBREF 6VCZ B 1 392 UNP P17562 METK2_ARATH 1 392 SEQADV 6VCZ SER A -2 UNP P17562 EXPRESSION TAG SEQADV 6VCZ ASN A -1 UNP P17562 EXPRESSION TAG SEQADV 6VCZ ALA A 0 UNP P17562 EXPRESSION TAG SEQADV 6VCZ LEU A 393 UNP P17562 EXPRESSION TAG SEQADV 6VCZ ASN A 394 UNP P17562 EXPRESSION TAG SEQADV 6VCZ ASN A 395 UNP P17562 EXPRESSION TAG SEQADV 6VCZ ILE A 396 UNP P17562 EXPRESSION TAG SEQADV 6VCZ GLY A 397 UNP P17562 EXPRESSION TAG SEQADV 6VCZ SER A 398 UNP P17562 EXPRESSION TAG SEQADV 6VCZ GLY A 399 UNP P17562 EXPRESSION TAG SEQADV 6VCZ SER B -2 UNP P17562 EXPRESSION TAG SEQADV 6VCZ ASN B -1 UNP P17562 EXPRESSION TAG SEQADV 6VCZ ALA B 0 UNP P17562 EXPRESSION TAG SEQADV 6VCZ LEU B 393 UNP P17562 EXPRESSION TAG SEQADV 6VCZ ASN B 394 UNP P17562 EXPRESSION TAG SEQADV 6VCZ ASN B 395 UNP P17562 EXPRESSION TAG SEQADV 6VCZ ILE B 396 UNP P17562 EXPRESSION TAG SEQADV 6VCZ GLY B 397 UNP P17562 EXPRESSION TAG SEQADV 6VCZ SER B 398 UNP P17562 EXPRESSION TAG SEQADV 6VCZ GLY B 399 UNP P17562 EXPRESSION TAG SEQRES 1 A 402 SER ASN ALA MET GLU THR PHE LEU PHE THR SER GLU SER SEQRES 2 A 402 VAL ASN GLU GLY HIS PRO ASP LYS LEU CYS ASP GLN ILE SEQRES 3 A 402 SER ASP ALA VAL LEU ASP ALA CYS LEU GLU GLN ASP PRO SEQRES 4 A 402 ASP SER LYS VAL ALA CYS GLU THR CYS THR LYS THR ASN SEQRES 5 A 402 MET VAL MET VAL PHE GLY GLU ILE THR THR LYS ALA THR SEQRES 6 A 402 ILE ASP TYR GLU LYS ILE VAL ARG ASP THR CYS ARG SER SEQRES 7 A 402 ILE GLY PHE ILE SER ASP ASP VAL GLY LEU ASP ALA ASP SEQRES 8 A 402 LYS CYS LYS VAL LEU VAL ASN ILE GLU GLN GLN SER PRO SEQRES 9 A 402 ASP ILE ALA GLN GLY VAL HIS GLY HIS PHE THR LYS ARG SEQRES 10 A 402 PRO GLU ASP ILE GLY ALA GLY ASP GLN GLY HIS MET PHE SEQRES 11 A 402 GLY TYR ALA THR ASP GLU THR PRO GLU LEU MET PRO LEU SEQRES 12 A 402 SER HIS VAL LEU ALA THR LYS ILE GLY ALA ARG LEU THR SEQRES 13 A 402 GLU VAL ARG LYS ASN GLY THR CYS ARG TRP LEU ARG PRO SEQRES 14 A 402 ASP GLY LYS THR GLN VAL THR VAL GLU TYR TYR ASN ASP SEQRES 15 A 402 ASN GLY ALA MET VAL PRO VAL ARG VAL HIS THR VAL LEU SEQRES 16 A 402 ILE SER THR GLN HIS ASP GLU THR VAL THR ASN ASP GLU SEQRES 17 A 402 ILE ALA ARG ASP LEU LYS GLU HIS VAL ILE LYS PRO ILE SEQRES 18 A 402 ILE PRO GLU LYS TYR LEU ASP ASP LYS THR ILE PHE HIS SEQRES 19 A 402 LEU ASN PRO SER GLY ARG PHE VAL ILE GLY GLY PRO HIS SEQRES 20 A 402 GLY ASP ALA GLY LEU THR GLY ARG LYS ILE ILE ILE ASP SEQRES 21 A 402 THR TYR GLY GLY TRP GLY ALA HIS GLY GLY GLY ALA PHE SEQRES 22 A 402 SER GLY LYS ASP PRO THR LYS VAL ASP ARG SER GLY ALA SEQRES 23 A 402 TYR ILE VAL ARG GLN ALA ALA LYS SER VAL VAL ALA ASN SEQRES 24 A 402 GLY MET ALA ARG ARG ALA LEU VAL GLN VAL SER TYR ALA SEQRES 25 A 402 ILE GLY VAL PRO GLU PRO LEU SER VAL PHE VAL ASP THR SEQRES 26 A 402 TYR GLY THR GLY LEU ILE PRO ASP LYS GLU ILE LEU LYS SEQRES 27 A 402 ILE VAL LYS GLU THR PHE ASP PHE ARG PRO GLY MET MET SEQRES 28 A 402 THR ILE ASN LEU ASP LEU LYS ARG GLY GLY ASN GLY ARG SEQRES 29 A 402 PHE GLN LYS THR ALA ALA TYR GLY HIS PHE GLY ARG ASP SEQRES 30 A 402 ASP PRO ASP PHE THR TRP GLU VAL VAL LYS PRO LEU LYS SEQRES 31 A 402 TRP ASP LYS PRO GLN LEU ASN ASN ILE GLY SER GLY SEQRES 1 B 402 SER ASN ALA MET GLU THR PHE LEU PHE THR SER GLU SER SEQRES 2 B 402 VAL ASN GLU GLY HIS PRO ASP LYS LEU CYS ASP GLN ILE SEQRES 3 B 402 SER ASP ALA VAL LEU ASP ALA CYS LEU GLU GLN ASP PRO SEQRES 4 B 402 ASP SER LYS VAL ALA CYS GLU THR CYS THR LYS THR ASN SEQRES 5 B 402 MET VAL MET VAL PHE GLY GLU ILE THR THR LYS ALA THR SEQRES 6 B 402 ILE ASP TYR GLU LYS ILE VAL ARG ASP THR CYS ARG SER SEQRES 7 B 402 ILE GLY PHE ILE SER ASP ASP VAL GLY LEU ASP ALA ASP SEQRES 8 B 402 LYS CYS LYS VAL LEU VAL ASN ILE GLU GLN GLN SER PRO SEQRES 9 B 402 ASP ILE ALA GLN GLY VAL HIS GLY HIS PHE THR LYS ARG SEQRES 10 B 402 PRO GLU ASP ILE GLY ALA GLY ASP GLN GLY HIS MET PHE SEQRES 11 B 402 GLY TYR ALA THR ASP GLU THR PRO GLU LEU MET PRO LEU SEQRES 12 B 402 SER HIS VAL LEU ALA THR LYS ILE GLY ALA ARG LEU THR SEQRES 13 B 402 GLU VAL ARG LYS ASN GLY THR CYS ARG TRP LEU ARG PRO SEQRES 14 B 402 ASP GLY LYS THR GLN VAL THR VAL GLU TYR TYR ASN ASP SEQRES 15 B 402 ASN GLY ALA MET VAL PRO VAL ARG VAL HIS THR VAL LEU SEQRES 16 B 402 ILE SER THR GLN HIS ASP GLU THR VAL THR ASN ASP GLU SEQRES 17 B 402 ILE ALA ARG ASP LEU LYS GLU HIS VAL ILE LYS PRO ILE SEQRES 18 B 402 ILE PRO GLU LYS TYR LEU ASP ASP LYS THR ILE PHE HIS SEQRES 19 B 402 LEU ASN PRO SER GLY ARG PHE VAL ILE GLY GLY PRO HIS SEQRES 20 B 402 GLY ASP ALA GLY LEU THR GLY ARG LYS ILE ILE ILE ASP SEQRES 21 B 402 THR TYR GLY GLY TRP GLY ALA HIS GLY GLY GLY ALA PHE SEQRES 22 B 402 SER GLY LYS ASP PRO THR LYS VAL ASP ARG SER GLY ALA SEQRES 23 B 402 TYR ILE VAL ARG GLN ALA ALA LYS SER VAL VAL ALA ASN SEQRES 24 B 402 GLY MET ALA ARG ARG ALA LEU VAL GLN VAL SER TYR ALA SEQRES 25 B 402 ILE GLY VAL PRO GLU PRO LEU SER VAL PHE VAL ASP THR SEQRES 26 B 402 TYR GLY THR GLY LEU ILE PRO ASP LYS GLU ILE LEU LYS SEQRES 27 B 402 ILE VAL LYS GLU THR PHE ASP PHE ARG PRO GLY MET MET SEQRES 28 B 402 THR ILE ASN LEU ASP LEU LYS ARG GLY GLY ASN GLY ARG SEQRES 29 B 402 PHE GLN LYS THR ALA ALA TYR GLY HIS PHE GLY ARG ASP SEQRES 30 B 402 ASP PRO ASP PHE THR TRP GLU VAL VAL LYS PRO LEU LYS SEQRES 31 B 402 TRP ASP LYS PRO GLN LEU ASN ASN ILE GLY SER GLY HET PO4 A 401 5 HET PO4 A 402 5 HET PO4 A 403 5 HET PO4 A 404 5 HET MG A 405 1 HET MG A 406 1 HET MG A 407 1 HET PGR A 408 5 HET PO4 B 401 5 HET PO4 B 402 5 HET PO4 B 403 5 HET PO4 B 404 5 HET MG B 405 1 HET MG B 406 1 HET MG B 407 1 HET MG B 408 1 HET MPO B 409 13 HET MXE B 410 5 HET PGR B 411 5 HET PGE B 412 10 HET PGE B 413 10 HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION HETNAM PGR R-1,2-PROPANEDIOL HETNAM MPO 3[N-MORPHOLINO]PROPANE SULFONIC ACID HETNAM MXE 2-METHOXYETHANOL HETNAM PGE TRIETHYLENE GLYCOL FORMUL 3 PO4 8(O4 P 3-) FORMUL 7 MG 7(MG 2+) FORMUL 10 PGR 2(C3 H8 O2) FORMUL 19 MPO C7 H15 N O4 S FORMUL 20 MXE C3 H8 O2 FORMUL 22 PGE 2(C6 H14 O4) FORMUL 24 HOH *1014(H2 O) HELIX 1 AA1 HIS A 15 ASP A 35 1 21 HELIX 2 AA2 ASP A 64 GLY A 77 1 14 HELIX 3 AA3 ARG A 114 ILE A 118 5 5 HELIX 4 AA4 PRO A 139 ASN A 158 1 20 HELIX 5 AA5 THR A 202 VAL A 214 1 13 HELIX 6 AA6 VAL A 214 ILE A 219 1 6 HELIX 7 AA7 PRO A 220 LEU A 224 5 5 HELIX 8 AA8 LYS A 277 ASN A 296 1 20 HELIX 9 AA9 PRO A 329 PHE A 341 1 13 HELIX 10 AB1 ARG A 344 LEU A 352 1 9 HELIX 11 AB2 PHE A 362 ALA A 367 5 6 HELIX 12 AB3 PHE A 378 VAL A 382 5 5 HELIX 13 AB4 HIS B 15 ASP B 35 1 21 HELIX 14 AB5 ASP B 64 GLY B 77 1 14 HELIX 15 AB6 ARG B 114 ILE B 118 5 5 HELIX 16 AB7 PRO B 139 ASN B 158 1 20 HELIX 17 AB8 THR B 202 VAL B 214 1 13 HELIX 18 AB9 PRO B 220 LEU B 224 5 5 HELIX 19 AC1 LYS B 277 ASN B 296 1 20 HELIX 20 AC2 PRO B 329 PHE B 341 1 13 HELIX 21 AC3 ARG B 344 LEU B 352 1 9 HELIX 22 AC4 PHE B 362 ALA B 367 5 6 HELIX 23 AC5 PHE B 378 VAL B 382 5 5 SHEET 1 AA1 4 PHE A 4 VAL A 11 0 SHEET 2 AA1 4 LEU A 164 ASP A 179 -1 O TYR A 176 N PHE A 4 SHEET 3 AA1 4 ALA A 182 HIS A 197 -1 O VAL A 186 N GLU A 175 SHEET 4 AA1 4 ILE A 229 LEU A 232 1 O ILE A 229 N VAL A 191 SHEET 1 AA2 4 LYS A 91 GLN A 99 0 SHEET 2 AA2 4 MET A 50 THR A 58 1 N VAL A 53 O ASN A 95 SHEET 3 AA2 4 LYS A 39 LYS A 47 -1 N CYS A 45 O MET A 52 SHEET 4 AA2 4 ALA A 247 LEU A 249 -1 O GLY A 248 N THR A 46 SHEET 1 AA3 2 ILE A 79 SER A 80 0 SHEET 2 AA3 2 LEU A 85 ASP A 86 -1 O LEU A 85 N SER A 80 SHEET 1 AA4 3 GLY A 124 THR A 131 0 SHEET 2 AA4 3 ARG A 301 TYR A 308 -1 O VAL A 304 N GLY A 128 SHEET 3 AA4 3 SER A 317 ASP A 321 -1 O ASP A 321 N LEU A 303 SHEET 1 AA5 4 PHE B 4 VAL B 11 0 SHEET 2 AA5 4 LEU B 164 ASP B 179 -1 O VAL B 174 N PHE B 6 SHEET 3 AA5 4 ALA B 182 HIS B 197 -1 O VAL B 186 N GLU B 175 SHEET 4 AA5 4 ILE B 229 LEU B 232 1 O ILE B 229 N HIS B 189 SHEET 1 AA6 4 LYS B 91 GLN B 99 0 SHEET 2 AA6 4 MET B 50 THR B 58 1 N VAL B 53 O ASN B 95 SHEET 3 AA6 4 LYS B 39 LYS B 47 -1 N LYS B 39 O THR B 58 SHEET 4 AA6 4 ALA B 247 LEU B 249 -1 O GLY B 248 N THR B 46 SHEET 1 AA7 2 ILE B 79 SER B 80 0 SHEET 2 AA7 2 LEU B 85 ASP B 86 -1 O LEU B 85 N SER B 80 SHEET 1 AA8 3 GLY B 124 THR B 131 0 SHEET 2 AA8 3 ARG B 301 TYR B 308 -1 O VAL B 304 N GLY B 128 SHEET 3 AA8 3 SER B 317 ASP B 321 -1 O ASP B 321 N LEU B 303 LINK OD2 ASP A 17 MG MG A 405 1555 1555 2.05 LINK OD2 ASP A 279 MG MG A 407 1555 1555 2.11 LINK O3 PO4 A 401 MG MG A 405 1555 1555 2.06 LINK O1 PO4 A 401 MG MG A 406 1555 1555 2.14 LINK O2 PO4 A 401 MG MG B 408 1555 1555 2.18 LINK O1 PO4 A 402 MG MG A 405 1555 1555 1.99 LINK O2 PO4 A 402 MG MG B 408 1555 1555 2.03 LINK MG MG A 405 O HOH A 579 1555 1555 2.13 LINK MG MG A 405 O HOH A 687 1555 1555 2.15 LINK MG MG A 405 O HOH A 699 1555 1555 2.12 LINK MG MG A 406 O HOH A 522 1555 1555 2.17 LINK MG MG A 406 O HOH A 534 1555 1555 2.09 LINK MG MG A 406 O HOH A 538 1555 1555 2.12 LINK MG MG A 406 O HOH A 574 1555 1555 1.96 LINK MG MG A 406 O HOH A 805 1555 1555 2.14 LINK MG MG A 407 O HOH A 608 1555 1555 2.00 LINK MG MG A 407 O HOH A 725 1555 1555 2.30 LINK MG MG A 407 O1 PO4 B 401 1555 1555 2.11 LINK MG MG A 407 O1 PO4 B 402 1555 1555 2.02 LINK MG MG A 407 O HOH B 510 1555 1555 2.42 LINK O HOH A 508 MG MG B 408 1555 1555 2.56 LINK O HOH A 592 MG MG B 407 1455 1555 2.03 LINK O HOH A 609 MG MG B 407 1455 1555 2.10 LINK O HOH A 718 MG MG B 407 1455 1555 2.12 LINK OD2 ASP B 17 MG MG B 405 1555 1555 2.06 LINK OD2 ASP B 279 MG MG B 408 1555 1555 2.13 LINK O4 PO4 B 401 MG MG B 405 1555 1555 2.03 LINK O3 PO4 B 401 MG MG B 406 1555 1555 2.06 LINK O4 PO4 B 402 MG MG B 405 1555 1555 2.05 LINK O1 PO4 B 404 MG MG B 407 1555 1555 2.13 LINK MG MG B 405 O HOH B 603 1555 1555 2.13 LINK MG MG B 405 O HOH B 689 1555 1555 2.14 LINK MG MG B 405 O HOH B 722 1555 1555 2.12 LINK MG MG B 406 O HOH B 536 1555 1555 2.12 LINK MG MG B 406 O HOH B 538 1555 1555 2.12 LINK MG MG B 406 O HOH B 606 1555 1555 2.08 LINK MG MG B 406 O HOH B 639 1555 1555 1.97 LINK MG MG B 406 O HOH B 818 1555 1555 2.20 LINK MG MG B 407 O HOH B 535 1555 1555 1.97 LINK MG MG B 407 O HOH B 556 1555 1555 2.07 LINK MG MG B 408 O HOH B 601 1555 1555 2.04 LINK MG MG B 408 O HOH B 763 1555 1555 2.31 SITE 1 AC1 15 HIS A 15 ASP A 17 LYS A 169 LYS A 253 SITE 2 AC1 15 PO4 A 402 MG A 405 MG A 406 HOH A 508 SITE 3 AC1 15 HOH A 538 HOH A 574 HOH A 687 HOH A 699 SITE 4 AC1 15 ASP B 122 MG B 408 HOH B 601 SITE 1 AC2 15 ASP A 17 ARG A 252 LYS A 253 PO4 A 401 SITE 2 AC2 15 MG A 405 HOH A 508 HOH A 518 HOH A 579 SITE 3 AC2 15 HOH A 699 HOH A 765 GLY B 268 ALA B 269 SITE 4 AC2 15 LYS B 273 ASP B 279 MG B 408 SITE 1 AC3 9 LYS A 169 PHE A 238 HOH A 543 HOH A 574 SITE 2 AC3 9 HOH A 578 HOH A 597 ASP B 122 ILE B 310 SITE 3 AC3 9 HOH B 698 SITE 1 AC4 6 PRO A 135 GLU A 136 LYS A 291 GLU A 381 SITE 2 AC4 6 HOH A 507 HOH A 693 SITE 1 AC5 7 ASP A 17 LYS A 253 PO4 A 401 PO4 A 402 SITE 2 AC5 7 HOH A 579 HOH A 687 HOH A 699 SITE 1 AC6 6 PO4 A 401 HOH A 522 HOH A 534 HOH A 538 SITE 2 AC6 6 HOH A 574 HOH A 805 SITE 1 AC7 7 LYS A 273 ASP A 279 HOH A 608 HOH A 725 SITE 2 AC7 7 PO4 B 401 PO4 B 402 HOH B 510 SITE 1 AC8 5 PRO A 135 GLU A 136 VAL A 143 LYS A 147 SITE 2 AC8 5 HOH A 546 SITE 1 AC9 18 ASP A 122 MG A 407 HOH A 608 HOH A 725 SITE 2 AC9 18 HIS B 15 ASP B 17 LYS B 169 LYS B 253 SITE 3 AC9 18 PO4 B 402 MG B 405 MG B 406 HOH B 510 SITE 4 AC9 18 HOH B 538 HOH B 606 HOH B 639 HOH B 689 SITE 5 AC9 18 HOH B 722 HOH B 818 SITE 1 AD1 15 GLY A 268 ALA A 269 LYS A 273 ASP A 279 SITE 2 AD1 15 MG A 407 ASP B 17 ARG B 252 LYS B 253 SITE 3 AD1 15 PO4 B 401 MG B 405 HOH B 510 HOH B 541 SITE 4 AD1 15 HOH B 603 HOH B 722 HOH B 790 SITE 1 AD2 9 ASP A 122 HOH A 691 LYS B 169 PHE B 238 SITE 2 AD2 9 HOH B 518 HOH B 521 HOH B 558 HOH B 639 SITE 3 AD2 9 HOH B 641 SITE 1 AD3 12 PRO A 329 ASP A 330 HOH A 592 HOH A 718 SITE 2 AD3 12 MG B 407 HOH B 501 HOH B 507 HOH B 535 SITE 3 AD3 12 HOH B 556 HOH B 727 HOH B 742 HOH B 750 SITE 1 AD4 7 ASP B 17 LYS B 253 PO4 B 401 PO4 B 402 SITE 2 AD4 7 HOH B 603 HOH B 689 HOH B 722 SITE 1 AD5 6 PO4 B 401 HOH B 536 HOH B 538 HOH B 606 SITE 2 AD5 6 HOH B 639 HOH B 818 SITE 1 AD6 6 HOH A 592 HOH A 609 HOH A 718 PO4 B 404 SITE 2 AD6 6 HOH B 535 HOH B 556 SITE 1 AD7 7 PO4 A 401 PO4 A 402 HOH A 508 LYS B 273 SITE 2 AD7 7 ASP B 279 HOH B 601 HOH B 763 SITE 1 AD8 8 ASP B 64 GLU B 66 LYS B 67 ARG B 70 SITE 2 AD8 8 HOH B 507 HOH B 563 HOH B 690 HOH B 738 SITE 1 AD9 4 GLU B 199 HOH B 577 HOH B 717 HOH B 780 SITE 1 AE1 6 GLU B 136 VAL B 143 LYS B 147 PRO B 220 SITE 2 AE1 6 HOH B 591 HOH B 619 SITE 1 AE2 11 TYR A 129 ASN A 178 TRP A 262 GLY A 263 SITE 2 AE2 11 ARG A 301 TYR A 323 HOH A 552 PHE B 319 SITE 3 AE2 11 ASP B 321 HOH B 516 HOH B 524 SITE 1 AE3 13 ALA A 264 PHE A 319 HOH A 737 HOH A 815 SITE 2 AE3 13 GLY B 261 TRP B 262 GLY B 263 ARG B 301 SITE 3 AE3 13 HOH B 509 HOH B 513 HOH B 752 HOH B 804 SITE 4 AE3 13 HOH B 875 CRYST1 62.798 99.276 86.930 90.00 109.74 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015924 0.000000 0.005715 0.00000 SCALE2 0.000000 0.010073 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012222 0.00000