HEADER OXIDOREDUCTASE 23-DEC-19 6VD5 TITLE CRYSTAL STRUCTURE OF DEHALOPEROXIDASE B IN COMPLEX WITH COFACTOR TITLE 2 IRON(III) MESOPORPHYRIN IX AND SUBSTRATE TRICHLOROPHENOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEHALOPEROXIDASE B; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMPHITRITE ORNATA; SOURCE 3 ORGANISM_TAXID: 129555; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: GOLD(DE3)PLYSS KEYWDS HEME PEROXIDASE, PEROXYGENASE, HEME COFACTOR, OXYGEN BINDING, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.A.GHILADI,V.S.DE SERRANO,T.MALEWSCHIK REVDAT 2 11-OCT-23 6VD5 1 REMARK REVDAT 1 23-DEC-20 6VD5 0 JRNL AUTH A.H.MCGUIRE,A.R.PETIT,J.KANG,T.MALEWSCHIK,V.DE SERRANO, JRNL AUTH 2 L.M.CAREY,R.A.GHILADI JRNL TITL NONNATIVE HEME INCORPORATION INTO MULTIFUNCTIONAL GLOBIN JRNL TITL 2 INCREASES PEROXYGENASE ACTIVITY AN ORDER AND MAGNITUDE JRNL TITL 3 COMPARED TO NATIVE ENZYME JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3699 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 33758 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1671 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.0000 - 3.7600 1.00 2882 143 0.1799 0.1976 REMARK 3 2 3.7600 - 2.9900 1.00 2784 109 0.1764 0.2071 REMARK 3 3 2.9800 - 2.6100 1.00 2724 132 0.1723 0.1866 REMARK 3 4 2.6100 - 2.3700 1.00 2675 166 0.1616 0.2350 REMARK 3 5 2.3700 - 2.2000 1.00 2668 145 0.1786 0.2070 REMARK 3 6 2.2000 - 2.0700 0.99 2689 128 0.1642 0.2049 REMARK 3 7 2.0700 - 1.9700 0.99 2641 145 0.1723 0.2503 REMARK 3 8 1.9700 - 1.8800 0.99 2620 159 0.1868 0.2123 REMARK 3 9 1.8800 - 1.8100 0.99 2646 135 0.1957 0.2644 REMARK 3 10 1.8100 - 1.7500 0.99 2618 129 0.2123 0.2869 REMARK 3 11 1.7500 - 1.6900 0.98 2596 149 0.2294 0.2428 REMARK 3 12 1.6900 - 1.6400 0.95 2544 131 0.2471 0.2619 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.163 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2688 REMARK 3 ANGLE : 0.848 3705 REMARK 3 CHIRALITY : 0.056 364 REMARK 3 PLANARITY : 0.004 492 REMARK 3 DIHEDRAL : 19.038 416 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:26) REMARK 3 ORIGIN FOR THE GROUP (A): -15.2047 -7.0958 18.5266 REMARK 3 T TENSOR REMARK 3 T11: 0.1296 T22: 0.1795 REMARK 3 T33: 0.1592 T12: -0.0065 REMARK 3 T13: 0.0130 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 2.1422 L22: 4.2897 REMARK 3 L33: 2.0671 L12: 0.9112 REMARK 3 L13: 0.4968 L23: 1.4484 REMARK 3 S TENSOR REMARK 3 S11: -0.0303 S12: -0.1935 S13: 0.1220 REMARK 3 S21: 0.1191 S22: 0.0243 S23: 0.2972 REMARK 3 S31: 0.0440 S32: -0.1323 S33: 0.0202 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 27:33) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5114 0.9955 22.1319 REMARK 3 T TENSOR REMARK 3 T11: 0.2436 T22: 0.3970 REMARK 3 T33: 0.4267 T12: -0.0556 REMARK 3 T13: 0.0110 T23: -0.0483 REMARK 3 L TENSOR REMARK 3 L11: 3.5890 L22: 3.3297 REMARK 3 L33: 2.2863 L12: -3.4259 REMARK 3 L13: -1.5960 L23: 1.8360 REMARK 3 S TENSOR REMARK 3 S11: -0.0059 S12: 0.8369 S13: 0.7380 REMARK 3 S21: -0.2415 S22: 0.2801 S23: -1.1182 REMARK 3 S31: -0.4419 S32: 0.4428 S33: -0.2022 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 34:37) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8445 10.0930 18.9403 REMARK 3 T TENSOR REMARK 3 T11: 0.6832 T22: 0.4986 REMARK 3 T33: 0.5148 T12: -0.0856 REMARK 3 T13: 0.1108 T23: 0.1217 REMARK 3 L TENSOR REMARK 3 L11: 6.2696 L22: 5.8244 REMARK 3 L33: 2.4716 L12: 5.7077 REMARK 3 L13: -3.5401 L23: -3.7680 REMARK 3 S TENSOR REMARK 3 S11: 0.2926 S12: 0.6914 S13: 0.6298 REMARK 3 S21: -1.4708 S22: 0.1445 S23: -1.5805 REMARK 3 S31: -1.0691 S32: -0.1060 S33: -0.3309 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 38:60) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1477 6.0803 22.9035 REMARK 3 T TENSOR REMARK 3 T11: 0.2196 T22: 0.2180 REMARK 3 T33: 0.2089 T12: 0.0581 REMARK 3 T13: -0.0053 T23: -0.0196 REMARK 3 L TENSOR REMARK 3 L11: 3.4501 L22: 2.4586 REMARK 3 L33: 8.9072 L12: 0.1605 REMARK 3 L13: 3.0004 L23: 1.8086 REMARK 3 S TENSOR REMARK 3 S11: -0.3739 S12: -0.2695 S13: 0.3951 REMARK 3 S21: -0.0914 S22: 0.1198 S23: 0.0368 REMARK 3 S31: -1.0074 S32: -0.5402 S33: 0.2484 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 61:83) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4088 -8.8688 4.3513 REMARK 3 T TENSOR REMARK 3 T11: 0.2684 T22: 0.1854 REMARK 3 T33: 0.1610 T12: -0.0326 REMARK 3 T13: 0.0349 T23: 0.0219 REMARK 3 L TENSOR REMARK 3 L11: 2.9145 L22: 1.6934 REMARK 3 L33: 3.4685 L12: -2.1908 REMARK 3 L13: -0.6229 L23: 0.9183 REMARK 3 S TENSOR REMARK 3 S11: 0.2846 S12: 0.1262 S13: 0.1827 REMARK 3 S21: -0.5871 S22: -0.0517 S23: -0.2591 REMARK 3 S31: -0.4631 S32: -0.2209 S33: -0.2141 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 84:90) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8388 3.5182 1.0689 REMARK 3 T TENSOR REMARK 3 T11: 0.6886 T22: 0.2179 REMARK 3 T33: 0.8261 T12: -0.1222 REMARK 3 T13: 0.4437 T23: 0.1118 REMARK 3 L TENSOR REMARK 3 L11: 4.0891 L22: 5.4134 REMARK 3 L33: 1.4513 L12: 1.6349 REMARK 3 L13: -2.4359 L23: -0.9677 REMARK 3 S TENSOR REMARK 3 S11: 0.3679 S12: -0.2221 S13: 0.6575 REMARK 3 S21: 0.7682 S22: 0.1441 S23: 0.8977 REMARK 3 S31: -0.5969 S32: -0.2652 S33: -0.4204 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 91:99) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1197 -3.5485 11.7728 REMARK 3 T TENSOR REMARK 3 T11: 0.4545 T22: 0.4006 REMARK 3 T33: 0.3023 T12: -0.1287 REMARK 3 T13: 0.0601 T23: -0.0906 REMARK 3 L TENSOR REMARK 3 L11: 4.9748 L22: 5.7416 REMARK 3 L33: 5.1528 L12: 5.3193 REMARK 3 L13: -4.8313 L23: -5.3195 REMARK 3 S TENSOR REMARK 3 S11: -0.3372 S12: 0.5914 S13: 0.4296 REMARK 3 S21: -1.0821 S22: 0.6435 S23: -0.5158 REMARK 3 S31: -0.5173 S32: 0.5022 S33: -0.2662 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 100:111) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5939 -12.3317 21.5597 REMARK 3 T TENSOR REMARK 3 T11: 0.1859 T22: 0.2184 REMARK 3 T33: 0.1646 T12: 0.0242 REMARK 3 T13: -0.0397 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 7.0035 L22: 7.6125 REMARK 3 L33: 8.0354 L12: 2.4184 REMARK 3 L13: -1.2998 L23: -3.2383 REMARK 3 S TENSOR REMARK 3 S11: 0.0033 S12: -0.4686 S13: -0.2870 REMARK 3 S21: 0.4217 S22: 0.1183 S23: -0.3586 REMARK 3 S31: -0.1966 S32: -0.0755 S33: -0.1135 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 112:128) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8248 -16.0747 14.4718 REMARK 3 T TENSOR REMARK 3 T11: 0.1461 T22: 0.2193 REMARK 3 T33: 0.1655 T12: -0.0342 REMARK 3 T13: -0.0237 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 7.6512 L22: 5.1272 REMARK 3 L33: 8.5311 L12: 1.9650 REMARK 3 L13: -4.5772 L23: -2.8733 REMARK 3 S TENSOR REMARK 3 S11: -0.0050 S12: -0.4069 S13: -0.4925 REMARK 3 S21: -0.0953 S22: -0.0235 S23: -0.2518 REMARK 3 S31: 0.1442 S32: 0.3585 S33: 0.0097 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 129:137) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5211 -5.4462 1.9252 REMARK 3 T TENSOR REMARK 3 T11: 0.5610 T22: 0.5167 REMARK 3 T33: 0.2875 T12: -0.1488 REMARK 3 T13: 0.1466 T23: -0.0173 REMARK 3 L TENSOR REMARK 3 L11: 4.2920 L22: 6.4867 REMARK 3 L33: 6.5684 L12: 0.1508 REMARK 3 L13: -1.2251 L23: -1.7931 REMARK 3 S TENSOR REMARK 3 S11: 0.5406 S12: -0.5221 S13: 0.4717 REMARK 3 S21: 0.4194 S22: -0.4811 S23: -0.0401 REMARK 3 S31: -1.3935 S32: 1.5299 S33: -0.0280 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 1:30) REMARK 3 ORIGIN FOR THE GROUP (A): -31.6409 2.1177 10.6394 REMARK 3 T TENSOR REMARK 3 T11: 0.1276 T22: 0.1357 REMARK 3 T33: 0.1695 T12: -0.0204 REMARK 3 T13: 0.0042 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 2.2282 L22: 2.8974 REMARK 3 L33: 4.1824 L12: -1.2554 REMARK 3 L13: -1.0209 L23: 1.5638 REMARK 3 S TENSOR REMARK 3 S11: -0.0748 S12: -0.1517 S13: 0.1055 REMARK 3 S21: 0.0007 S22: 0.0061 S23: -0.0239 REMARK 3 S31: -0.0686 S32: 0.1768 S33: 0.0687 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 31:39) REMARK 3 ORIGIN FOR THE GROUP (A): -41.6222 3.8606 25.2784 REMARK 3 T TENSOR REMARK 3 T11: 0.2869 T22: 0.4412 REMARK 3 T33: 0.3582 T12: -0.0663 REMARK 3 T13: 0.0133 T23: 0.0409 REMARK 3 L TENSOR REMARK 3 L11: 5.3216 L22: 6.5258 REMARK 3 L33: 4.4468 L12: 0.8740 REMARK 3 L13: 3.8316 L23: 3.2333 REMARK 3 S TENSOR REMARK 3 S11: 0.2724 S12: -0.1290 S13: -0.9322 REMARK 3 S21: 0.8244 S22: 0.0153 S23: 0.3643 REMARK 3 S31: 0.7264 S32: -1.7006 S33: -0.2443 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN B AND RESID 40:50) REMARK 3 ORIGIN FOR THE GROUP (A): -33.0465 11.6997 24.0684 REMARK 3 T TENSOR REMARK 3 T11: 0.2405 T22: 0.2051 REMARK 3 T33: 0.2796 T12: 0.0143 REMARK 3 T13: -0.0981 T23: -0.0572 REMARK 3 L TENSOR REMARK 3 L11: 9.3627 L22: 8.5566 REMARK 3 L33: 1.1052 L12: -4.7274 REMARK 3 L13: 2.7026 L23: -1.1480 REMARK 3 S TENSOR REMARK 3 S11: -0.1240 S12: -0.4928 S13: 0.0462 REMARK 3 S21: 0.9422 S22: 0.2117 S23: -0.7555 REMARK 3 S31: 0.1496 S32: 0.0774 S33: -0.0933 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN B AND RESID 51:60) REMARK 3 ORIGIN FOR THE GROUP (A): -29.3925 -0.7454 20.3278 REMARK 3 T TENSOR REMARK 3 T11: 0.2153 T22: 0.1980 REMARK 3 T33: 0.2091 T12: 0.0203 REMARK 3 T13: -0.0182 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 8.2389 L22: 4.4522 REMARK 3 L33: 4.3022 L12: 0.0506 REMARK 3 L13: 1.7439 L23: 3.9804 REMARK 3 S TENSOR REMARK 3 S11: -0.2197 S12: -0.3541 S13: 0.0266 REMARK 3 S21: 0.4951 S22: 0.1879 S23: -0.4459 REMARK 3 S31: 0.2226 S32: 0.2675 S33: 0.0475 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN B AND RESID 61:77) REMARK 3 ORIGIN FOR THE GROUP (A): -31.3464 -11.2659 6.3117 REMARK 3 T TENSOR REMARK 3 T11: 0.2304 T22: 0.1288 REMARK 3 T33: 0.1962 T12: -0.0062 REMARK 3 T13: 0.0405 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 2.5123 L22: 3.4089 REMARK 3 L33: 5.1566 L12: 1.1489 REMARK 3 L13: 2.4952 L23: 3.0962 REMARK 3 S TENSOR REMARK 3 S11: 0.1943 S12: -0.0009 S13: -0.0300 REMARK 3 S21: 0.0871 S22: -0.1389 S23: -0.2368 REMARK 3 S31: 0.4666 S32: -0.0242 S33: -0.0395 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN B AND RESID 78:86) REMARK 3 ORIGIN FOR THE GROUP (A): -36.7225 -17.3211 16.0814 REMARK 3 T TENSOR REMARK 3 T11: 0.8038 T22: 0.4550 REMARK 3 T33: 0.3164 T12: -0.3182 REMARK 3 T13: 0.0078 T23: 0.0288 REMARK 3 L TENSOR REMARK 3 L11: 5.2786 L22: 1.7926 REMARK 3 L33: 2.7478 L12: -0.4142 REMARK 3 L13: -3.7805 L23: 0.0167 REMARK 3 S TENSOR REMARK 3 S11: 0.9823 S12: -1.3675 S13: 0.5378 REMARK 3 S21: 1.9044 S22: -0.6225 S23: 0.1301 REMARK 3 S31: 0.0387 S32: 0.4458 S33: -0.2795 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN B AND RESID 87:94) REMARK 3 ORIGIN FOR THE GROUP (A): -45.5783 -8.4794 16.7685 REMARK 3 T TENSOR REMARK 3 T11: 0.6657 T22: 0.5641 REMARK 3 T33: 0.5329 T12: -0.0797 REMARK 3 T13: 0.2434 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 3.2049 L22: 9.2780 REMARK 3 L33: 5.4788 L12: 5.4516 REMARK 3 L13: 4.1902 L23: 7.1300 REMARK 3 S TENSOR REMARK 3 S11: 0.2523 S12: -1.6903 S13: -1.0600 REMARK 3 S21: 1.4866 S22: -0.3887 S23: 0.1838 REMARK 3 S31: 1.0749 S32: -0.8148 S33: -0.0269 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN B AND RESID 95:111) REMARK 3 ORIGIN FOR THE GROUP (A): -39.9953 1.5446 7.4415 REMARK 3 T TENSOR REMARK 3 T11: 0.2288 T22: 0.1821 REMARK 3 T33: 0.2401 T12: 0.0168 REMARK 3 T13: 0.0127 T23: -0.0472 REMARK 3 L TENSOR REMARK 3 L11: 9.2331 L22: 3.0978 REMARK 3 L33: 3.2658 L12: 5.2341 REMARK 3 L13: -4.8069 L23: -2.6454 REMARK 3 S TENSOR REMARK 3 S11: -0.0805 S12: 0.1140 S13: 0.1363 REMARK 3 S21: 0.2930 S22: -0.2075 S23: 0.2198 REMARK 3 S31: 0.0455 S32: -0.3614 S33: 0.2313 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN B AND RESID 112:128) REMARK 3 ORIGIN FOR THE GROUP (A): -36.9448 -2.9986 0.6641 REMARK 3 T TENSOR REMARK 3 T11: 0.1749 T22: 0.1848 REMARK 3 T33: 0.2318 T12: 0.0159 REMARK 3 T13: 0.0378 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 7.9010 L22: 2.6834 REMARK 3 L33: 6.5189 L12: 3.5897 REMARK 3 L13: -2.1285 L23: -2.6446 REMARK 3 S TENSOR REMARK 3 S11: -0.0785 S12: 0.5657 S13: 0.3121 REMARK 3 S21: -0.1426 S22: -0.0125 S23: 0.3268 REMARK 3 S31: 0.0737 S32: -0.2080 S33: 0.1049 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN B AND RESID 129:137) REMARK 3 ORIGIN FOR THE GROUP (A): -44.9531 -15.1860 11.5397 REMARK 3 T TENSOR REMARK 3 T11: 0.5445 T22: 0.3025 REMARK 3 T33: 0.4611 T12: -0.1857 REMARK 3 T13: 0.1363 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 5.5615 L22: 4.3077 REMARK 3 L33: 5.8181 L12: 1.0387 REMARK 3 L13: 0.1322 L23: -3.5973 REMARK 3 S TENSOR REMARK 3 S11: 0.5539 S12: -0.5401 S13: 0.5547 REMARK 3 S21: 1.2990 S22: 0.0352 S23: 1.7055 REMARK 3 S31: -0.3217 S32: -0.1966 S33: -0.4712 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VD5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246192. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33758 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 34.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3IXF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULPHATE MPEG 2000, 29 REMARK 280 -33%, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.63000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.99650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.99800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.99650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.63000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.99800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 88 REMARK 465 HIS A 89 REMARK 465 SER A 90 REMARK 465 GLY A 91 REMARK 465 LYS B 87 REMARK 465 GLN B 88 REMARK 465 HIS B 89 REMARK 465 SER B 90 REMARK 465 GLY B 91 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 33 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 85 CD OE1 NE2 REMARK 470 LYS A 87 CG CD CE NZ REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 ARG B 33 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 36 CE NZ REMARK 470 LYS B 137 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 65 O HOH B 402 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 12 49.61 -148.37 REMARK 500 ASP B 12 49.60 -147.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MH0 A 201 REMARK 610 MH0 B 303 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MH0 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue T6C A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue T6C B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MH0 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 304 DBREF 6VD5 A 1 137 UNP Q9NAV7 Q9NAV7_9ANNE 2 138 DBREF 6VD5 B 1 137 UNP Q9NAV7 Q9NAV7_9ANNE 2 138 SEQRES 1 A 137 GLY PHE LYS GLN ASP ILE ALA THR LEU ARG GLY ASP LEU SEQRES 2 A 137 ARG THR TYR ALA GLN ASP ILE PHE LEU ALA PHE LEU ASN SEQRES 3 A 137 LYS TYR PRO ASP GLU LYS ARG ASN PHE LYS ASN TYR VAL SEQRES 4 A 137 GLY LYS SER ASP GLN GLU LEU LYS SER MET ALA LYS PHE SEQRES 5 A 137 GLY ASP HIS THR GLU LYS VAL PHE ASN LEU MET MET GLU SEQRES 6 A 137 VAL ALA ASP ARG ALA THR ASP CYS VAL PRO LEU ALA SER SEQRES 7 A 137 ASP ALA SER THR LEU VAL GLN MET LYS GLN HIS SER GLY SEQRES 8 A 137 LEU THR THR GLY ASN PHE GLU LYS LEU PHE VAL ALA LEU SEQRES 9 A 137 VAL GLU TYR MET ARG ALA SER GLY GLN SER PHE ASP SER SEQRES 10 A 137 GLN SER TRP ASP ARG PHE GLY LYS ASN LEU VAL SER ALA SEQRES 11 A 137 LEU SER SER ALA GLY MET LYS SEQRES 1 B 137 GLY PHE LYS GLN ASP ILE ALA THR LEU ARG GLY ASP LEU SEQRES 2 B 137 ARG THR TYR ALA GLN ASP ILE PHE LEU ALA PHE LEU ASN SEQRES 3 B 137 LYS TYR PRO ASP GLU LYS ARG ASN PHE LYS ASN TYR VAL SEQRES 4 B 137 GLY LYS SER ASP GLN GLU LEU LYS SER MET ALA LYS PHE SEQRES 5 B 137 GLY ASP HIS THR GLU LYS VAL PHE ASN LEU MET MET GLU SEQRES 6 B 137 VAL ALA ASP ARG ALA THR ASP CYS VAL PRO LEU ALA SER SEQRES 7 B 137 ASP ALA SER THR LEU VAL GLN MET LYS GLN HIS SER GLY SEQRES 8 B 137 LEU THR THR GLY ASN PHE GLU LYS LEU PHE VAL ALA LEU SEQRES 9 B 137 VAL GLU TYR MET ARG ALA SER GLY GLN SER PHE ASP SER SEQRES 10 B 137 GLN SER TRP ASP ARG PHE GLY LYS ASN LEU VAL SER ALA SEQRES 11 B 137 LEU SER SER ALA GLY MET LYS HET MH0 A 201 39 HET EDO A 202 4 HET EDO A 203 4 HET T6C A 204 10 HET EDO A 205 4 HET SO4 A 206 5 HET SO4 A 207 5 HET SO4 A 208 5 HET EDO B 301 4 HET T6C B 302 10 HET MH0 B 303 39 HET SO4 B 304 5 HETNAM MH0 MESOHEME HETNAM EDO 1,2-ETHANEDIOL HETNAM T6C 2,4,6-TRICHLOROPHENOL HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 MH0 2(C34 H36 FE N4 O4) FORMUL 4 EDO 4(C2 H6 O2) FORMUL 6 T6C 2(C6 H3 CL3 O) FORMUL 8 SO4 4(O4 S 2-) FORMUL 15 HOH *166(H2 O) HELIX 1 AA1 GLY A 1 GLY A 11 1 11 HELIX 2 AA2 ASP A 12 TYR A 28 1 17 HELIX 3 AA3 TYR A 28 ARG A 33 1 6 HELIX 4 AA4 SER A 42 LYS A 47 1 6 HELIX 5 AA5 MET A 49 ALA A 70 1 22 HELIX 6 AA6 LEU A 76 MET A 86 1 11 HELIX 7 AA7 THR A 93 SER A 111 1 19 HELIX 8 AA8 ASP A 116 ALA A 134 1 19 HELIX 9 AA9 PHE B 2 GLY B 11 1 10 HELIX 10 AB1 ASP B 12 TYR B 28 1 17 HELIX 11 AB2 PRO B 29 PHE B 35 5 7 HELIX 12 AB3 SER B 42 LYS B 47 1 6 HELIX 13 AB4 MET B 49 ALA B 70 1 22 HELIX 14 AB5 LEU B 76 GLN B 85 1 10 HELIX 15 AB6 THR B 93 SER B 111 1 19 HELIX 16 AB7 ASP B 116 ALA B 134 1 19 LINK CE1BPHE A 97 CMC MH0 A 201 1555 1555 1.50 SITE 1 AC1 10 PHE A 35 HIS A 55 VAL A 59 LEU A 62 SITE 2 AC1 10 LEU A 83 MET A 86 LEU A 92 PHE A 97 SITE 3 AC1 10 LEU A 100 T6C A 204 SITE 1 AC2 4 ASP A 5 THR A 8 SER A 114 HOH B 417 SITE 1 AC3 8 VAL A 74 PRO A 75 ASN A 126 SER A 129 SITE 2 AC3 8 ALA A 130 HOH A 315 HOH A 337 THR B 71 SITE 1 AC4 8 PHE A 21 PHE A 35 TYR A 38 PHE A 52 SITE 2 AC4 8 HIS A 55 THR A 56 VAL A 59 MH0 A 201 SITE 1 AC5 3 TYR A 107 SER A 111 GLN A 113 SITE 1 AC6 7 GLY A 1 PHE A 2 LYS A 3 HOH A 313 SITE 2 AC6 7 LYS B 32 GLY B 40 LYS B 41 SITE 1 AC7 8 LYS A 32 GLY A 40 LYS A 41 HOH A 310 SITE 2 AC7 8 GLY B 1 PHE B 2 LYS B 3 HOH B 461 SITE 1 AC8 7 GLN A 44 LEU A 62 GLU A 65 ARG A 69 SITE 2 AC8 7 HOH A 301 HOH A 307 ALA B 7 SITE 1 AC9 5 HOH A 317 ASP B 5 THR B 8 SER B 114 SITE 2 AC9 5 HOH B 438 SITE 1 AD1 9 PHE B 21 PHE B 35 TYR B 38 PHE B 52 SITE 2 AD1 9 HIS B 55 THR B 56 VAL B 59 MH0 B 303 SITE 3 AD1 9 HOH B 458 SITE 1 AD2 11 PHE B 24 PHE B 35 VAL B 59 LEU B 62 SITE 2 AD2 11 MET B 63 LEU B 83 LEU B 92 ASN B 96 SITE 3 AD2 11 PHE B 97 LEU B 100 T6C B 302 SITE 1 AD3 6 ALA A 7 GLN B 44 LEU B 62 GLU B 65 SITE 2 AD3 6 ARG B 69 HOH B 402 CRYST1 59.260 67.996 67.993 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016875 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014707 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014707 0.00000