HEADER OXIDOREDUCTASE 27-DEC-19 6VDW TITLE CRYSTAL STRUCTURE OF DEHALOPEROXIDASE B IN COMPLEX WITH COFACTOR TITLE 2 MANGANESE(III) PORPHYRIN AND SUBSTRATE 4-NITROPHENOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEHALOPEROXIDASE B; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMPHITRITE ORNATA; SOURCE 3 ORGANISM_TAXID: 129555; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: GOLD(DDE3)PLYSS KEYWDS HEME PEROXIDASE, PEROXYGENASE, HEME COFACTOR, OXYGEN BINDING, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.A.GHILADI,V.S.DE SERRANO,A.MCGUIRE,T.MALEWSCHIK REVDAT 2 11-OCT-23 6VDW 1 REMARK REVDAT 1 30-DEC-20 6VDW 0 JRNL AUTH A.H.MCGUIRE,A.R.PETIT,J.KANG,T.MALEWSCHIK,V.DE SERRANO, JRNL AUTH 2 L.M.CAREY,R.A.GHILADI JRNL TITL NONNATIVE HEME INCORPORATION INTO MULTIFUNCTIONAL GLOBIN JRNL TITL 2 INCREASES PEROXYGENASE ACTIVITY AN ORDER AND MAGNITUDE JRNL TITL 3 COMPARED TO NATIVE ENZYME JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3714 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 44226 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2223 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.5800 - 3.7800 0.99 2794 150 0.1732 0.2049 REMARK 3 2 3.7800 - 3.0000 1.00 2680 156 0.1688 0.2173 REMARK 3 3 3.0000 - 2.6200 1.00 2677 127 0.1677 0.1908 REMARK 3 4 2.6200 - 2.3800 1.00 2650 131 0.1585 0.1890 REMARK 3 5 2.3800 - 2.2100 1.00 2631 147 0.1596 0.1893 REMARK 3 6 2.2100 - 2.0800 1.00 2649 117 0.1443 0.1808 REMARK 3 7 2.0800 - 1.9800 1.00 2622 123 0.1462 0.1596 REMARK 3 8 1.9800 - 1.8900 1.00 2631 135 0.1492 0.2095 REMARK 3 9 1.8900 - 1.8200 1.00 2567 181 0.1577 0.1977 REMARK 3 10 1.8200 - 1.7500 1.00 2594 145 0.1575 0.1867 REMARK 3 11 1.7500 - 1.7000 1.00 2575 133 0.1634 0.2071 REMARK 3 12 1.7000 - 1.6500 1.00 2605 159 0.1602 0.1971 REMARK 3 13 1.6500 - 1.6100 1.00 2569 125 0.1618 0.2196 REMARK 3 14 1.6100 - 1.5700 1.00 2648 112 0.1649 0.1961 REMARK 3 15 1.5700 - 1.5300 1.00 2608 129 0.1767 0.2023 REMARK 3 16 1.5300 - 1.5000 0.98 2503 153 0.2001 0.2390 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.121 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 2762 REMARK 3 ANGLE : 2.035 3793 REMARK 3 CHIRALITY : 0.086 373 REMARK 3 PLANARITY : 0.018 505 REMARK 3 DIHEDRAL : 27.373 438 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VDW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246207. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44226 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 44.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3IXF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULPHATE MPEG 2000, 29 REMARK 280 -33%, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.65050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.80450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.88350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.80450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.65050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.88350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 36 CD CE NZ REMARK 470 LYS A 137 CD CE NZ REMARK 470 LYS B 87 CD CE NZ REMARK 470 LYS B 137 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C GLU B 31 N ARG B 33 1.70 REMARK 500 OE1 GLU B 45 O HOH B 302 2.10 REMARK 500 NZ LYS A 32 O HOH A 305 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 69 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 10 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP B 19 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 LYS B 32 CD - CE - NZ ANGL. DEV. = 15.5 DEGREES REMARK 500 LYS B 32 N - CA - C ANGL. DEV. = -22.4 DEGREES REMARK 500 LYS B 32 N - CA - C ANGL. DEV. = -20.0 DEGREES REMARK 500 GLY B 91 C - N - CA ANGL. DEV. = -15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 12 51.43 -147.97 REMARK 500 PHE A 35 58.48 -140.21 REMARK 500 PHE A 35 58.48 -140.41 REMARK 500 LYS B 32 0.25 -50.92 REMARK 500 LYS B 32 2.42 -52.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 31 11.60 REMARK 500 GLU A 31 11.09 REMARK 500 GLU B 31 24.87 REMARK 500 GLU B 31 25.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MNR A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 89 NE2 REMARK 620 2 MNR A 201 NA 96.3 REMARK 620 3 MNR A 201 NB 96.1 90.9 REMARK 620 4 MNR A 201 NC 98.9 164.8 89.0 REMARK 620 5 MNR A 201 ND 96.3 91.6 167.0 85.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MNR B 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 89 NE2 REMARK 620 2 MNR B 201 NA 99.4 REMARK 620 3 MNR B 201 NB 96.6 91.0 REMARK 620 4 MNR B 201 NC 98.2 162.3 88.8 REMARK 620 5 MNR B 201 ND 98.5 90.0 164.6 85.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MNR A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NPO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MNR B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NPO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 207 DBREF 6VDW A 1 137 UNP Q9NAV7 Q9NAV7_9ANNE 2 138 DBREF 6VDW B 1 137 UNP Q9NAV7 Q9NAV7_9ANNE 2 138 SEQRES 1 A 137 GLY PHE LYS GLN ASP ILE ALA THR LEU ARG GLY ASP LEU SEQRES 2 A 137 ARG THR TYR ALA GLN ASP ILE PHE LEU ALA PHE LEU ASN SEQRES 3 A 137 LYS TYR PRO ASP GLU LYS ARG ASN PHE LYS ASN TYR VAL SEQRES 4 A 137 GLY LYS SER ASP GLN GLU LEU LYS SER MET ALA LYS PHE SEQRES 5 A 137 GLY ASP HIS THR GLU LYS VAL PHE ASN LEU MET MET GLU SEQRES 6 A 137 VAL ALA ASP ARG ALA THR ASP CYS VAL PRO LEU ALA SER SEQRES 7 A 137 ASP ALA SER THR LEU VAL GLN MET LYS GLN HIS SER GLY SEQRES 8 A 137 LEU THR THR GLY ASN PHE GLU LYS LEU PHE VAL ALA LEU SEQRES 9 A 137 VAL GLU TYR MET ARG ALA SER GLY GLN SER PHE ASP SER SEQRES 10 A 137 GLN SER TRP ASP ARG PHE GLY LYS ASN LEU VAL SER ALA SEQRES 11 A 137 LEU SER SER ALA GLY MET LYS SEQRES 1 B 137 GLY PHE LYS GLN ASP ILE ALA THR LEU ARG GLY ASP LEU SEQRES 2 B 137 ARG THR TYR ALA GLN ASP ILE PHE LEU ALA PHE LEU ASN SEQRES 3 B 137 LYS TYR PRO ASP GLU LYS ARG ASN PHE LYS ASN TYR VAL SEQRES 4 B 137 GLY LYS SER ASP GLN GLU LEU LYS SER MET ALA LYS PHE SEQRES 5 B 137 GLY ASP HIS THR GLU LYS VAL PHE ASN LEU MET MET GLU SEQRES 6 B 137 VAL ALA ASP ARG ALA THR ASP CYS VAL PRO LEU ALA SER SEQRES 7 B 137 ASP ALA SER THR LEU VAL GLN MET LYS GLN HIS SER GLY SEQRES 8 B 137 LEU THR THR GLY ASN PHE GLU LYS LEU PHE VAL ALA LEU SEQRES 9 B 137 VAL GLU TYR MET ARG ALA SER GLY GLN SER PHE ASP SER SEQRES 10 B 137 GLN SER TRP ASP ARG PHE GLY LYS ASN LEU VAL SER ALA SEQRES 11 B 137 LEU SER SER ALA GLY MET LYS HET MNR A 201 43 HET NPO A 202 10 HET EDO A 203 4 HET EDO A 204 4 HET EDO A 205 4 HET PEG A 206 7 HET EDO A 207 4 HET EDO A 208 4 HET PEG A 209 7 HET PEG A 210 7 HET MNR B 201 43 HET NPO B 202 10 HET EDO B 203 4 HET EDO B 204 4 HET PEG B 205 7 HET SO4 B 206 5 HET SO4 B 207 5 HETNAM MNR PROTOPORPHYRIN IX CONTAINING MN HETNAM NPO P-NITROPHENOL HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 MNR 2(C34 H32 MN N4 O4 5+) FORMUL 4 NPO 2(C6 H5 N O3) FORMUL 5 EDO 7(C2 H6 O2) FORMUL 8 PEG 4(C4 H10 O3) FORMUL 18 SO4 2(O4 S 2-) FORMUL 20 HOH *231(H2 O) HELIX 1 AA1 GLY A 1 GLY A 11 1 11 HELIX 2 AA2 ASP A 12 TYR A 28 1 17 HELIX 3 AA3 PRO A 29 VAL A 39 5 11 HELIX 4 AA4 SER A 42 LYS A 47 1 6 HELIX 5 AA5 MET A 49 ALA A 70 1 22 HELIX 6 AA6 LEU A 76 MET A 86 1 11 HELIX 7 AA7 LYS A 87 SER A 90 5 4 HELIX 8 AA8 THR A 93 SER A 111 1 19 HELIX 9 AA9 ASP A 116 ALA A 134 1 19 HELIX 10 AB1 PHE B 2 ASP B 12 1 11 HELIX 11 AB2 ASP B 12 TYR B 28 1 17 HELIX 12 AB3 PRO B 29 VAL B 39 5 11 HELIX 13 AB4 SER B 42 SER B 48 1 7 HELIX 14 AB5 MET B 49 ALA B 70 1 22 HELIX 15 AB6 LEU B 76 MET B 86 1 11 HELIX 16 AB7 LYS B 87 SER B 90 5 4 HELIX 17 AB8 THR B 93 SER B 111 1 19 HELIX 18 AB9 ASP B 116 ALA B 134 1 19 LINK NE2 HIS A 89 MN MNR A 201 1555 1555 2.27 LINK NE2 HIS B 89 MN MNR B 201 1555 1555 2.25 SITE 1 AC1 16 PHE A 24 GLU A 31 ASN A 34 HIS A 55 SITE 2 AC1 16 LYS A 58 VAL A 59 MET A 63 MET A 86 SITE 3 AC1 16 GLN A 88 HIS A 89 LEU A 92 ASN A 96 SITE 4 AC1 16 PHE A 97 LEU A 127 NPO A 202 HOH A 314 SITE 1 AC2 8 PHE A 21 PHE A 35 TYR A 38 HIS A 55 SITE 2 AC2 8 THR A 56 VAL A 59 PHE A 60 MNR A 201 SITE 1 AC3 10 ARG A 10 GLY A 11 ASP A 12 LEU A 13 SITE 2 AC3 10 ARG A 14 GLU A 57 HOH A 340 ARG B 14 SITE 3 AC3 10 GLU B 57 LYS B 58 SITE 1 AC4 6 LYS A 41 GLU A 45 SER A 48 MET A 49 SITE 2 AC4 6 HOH A 369 SER B 133 SITE 1 AC5 5 ASP A 5 THR A 8 SER A 114 HOH A 310 SITE 2 AC5 5 HOH B 313 SITE 1 AC6 5 GLU A 31 ASN A 34 GLY A 91 THR A 93 SITE 2 AC6 5 ASN A 96 SITE 1 AC7 6 GLU A 45 ASP A 68 ARG A 69 HOH A 354 SITE 2 AC7 6 HOH A 373 ASP B 68 SITE 1 AC8 5 LYS A 51 HIS A 55 PEG A 209 HOH A 314 SITE 2 AC8 5 GLN B 85 SITE 1 AC9 5 ASN A 37 LYS A 51 HIS A 55 EDO A 208 SITE 2 AC9 5 HOH A 397 SITE 1 AD1 10 THR A 93 GLY A 95 LYS A 99 HOH A 317 SITE 2 AD1 10 HOH A 320 THR B 93 THR B 94 GLY B 95 SITE 3 AD1 10 LYS B 99 HOH B 308 SITE 1 AD2 18 PHE B 24 GLU B 31 ASN B 34 PHE B 35 SITE 2 AD2 18 HIS B 55 LYS B 58 VAL B 59 LEU B 62 SITE 3 AD2 18 MET B 63 MET B 86 GLN B 88 HIS B 89 SITE 4 AD2 18 LEU B 92 ASN B 96 PHE B 97 LEU B 127 SITE 5 AD2 18 NPO B 202 HOH B 303 SITE 1 AD3 8 PHE B 21 PHE B 35 TYR B 38 HIS B 55 SITE 2 AD3 8 THR B 56 VAL B 59 PHE B 60 MNR B 201 SITE 1 AD4 6 HOH A 315 GLN B 4 ASP B 5 THR B 8 SITE 2 AD4 6 SER B 114 HOH B 317 SITE 1 AD5 5 ASN B 34 GLY B 91 THR B 93 ASN B 96 SITE 2 AD5 5 HOH B 310 SITE 1 AD6 7 GLN A 85 HOH A 349 ALA B 50 LYS B 51 SITE 2 AD6 7 ASP B 54 HIS B 55 HOH B 303 SITE 1 AD7 11 LYS A 32 VAL A 39 GLY A 40 HOH A 302 SITE 2 AD7 11 GLY B 1 PHE B 2 LYS B 3 HOH B 318 SITE 3 AD7 11 HOH B 335 HOH B 358 HOH B 385 SITE 1 AD8 10 GLY A 1 PHE A 2 LYS A 3 ASP A 116 SITE 2 AD8 10 HOH A 331 HOH A 339 LYS B 32 GLY B 40 SITE 3 AD8 10 HOH B 357 HOH B 373 CRYST1 59.301 67.767 67.609 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016863 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014756 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014791 0.00000