HEADER PEPTIDE BINDING PROTEIN 31-DEC-19 6VED TITLE SOLUTION STRUCTURE OF THE TTD AND LINKER REGION OF UHRF1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE UHRF1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: INVERTED CCAAT BOX-BINDING PROTEIN OF 90 KDA,NUCLEAR PROTEIN COMPND 5 95,NUCLEAR ZINC FINGER PROTEIN NP95,HNP95,RING FINGER PROTEIN 106, COMPND 6 RING-TYPE E3 UBIQUITIN TRANSFERASE UHRF1,TRANSCRIPTION FACTOR ICBP90, COMPND 7 UBIQUITIN-LIKE PHD AND RING FINGER DOMAIN-CONTAINING PROTEIN 1, COMPND 8 HUHRF1,UBIQUITIN-LIKE-CONTAINING PHD AND RING FINGER DOMAINS PROTEIN COMPND 9 1; COMPND 10 EC: 2.3.2.27; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UHRF1, ICBP90, NP95, RNF106; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HISTONE, TANDEM TUDOR DOMAIN, UHRF1, H3K9ME3, PEPTIDE BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.LEMAK,S.HOULISTON,S.DUAN,M.S.ONG,C.H.ARROWSMITH REVDAT 5 15-MAY-24 6VED 1 REMARK REVDAT 4 14-JUN-23 6VED 1 REMARK REVDAT 3 26-AUG-20 6VED 1 JRNL REVDAT 2 15-JUL-20 6VED 1 JRNL REVDAT 1 17-JUN-20 6VED 0 JRNL AUTH M.TAUBER,S.KREUZ,A.LEMAK,P.MANDAL,Z.YERKESH,A.VELUCHAMY, JRNL AUTH 2 B.AL-GASHGARI,A.ALJAHANI,L.V.CORTES-MEDINA,D.AZHIBEK,L.FAN, JRNL AUTH 3 M.S.ONG,S.DUAN,S.HOULISTON,C.H.ARROWSMITH,W.FISCHLE JRNL TITL ALTERNATIVE SPLICING AND ALLOSTERIC REGULATION MODULATE THE JRNL TITL 2 CHROMATIN BINDING OF UHRF1. JRNL REF NUCLEIC ACIDS RES. V. 48 7728 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32609811 JRNL DOI 10.1093/NAR/GKAA520 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VED COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246204. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 250 UM [U-99% 13C; U-99% 15N] REMARK 210 TTD-LINKER, 150 MM SODIUM REMARK 210 CHLORIDE, 25 MM SODIUM PHOSPHATE, REMARK 210 5 MM DTT, 2 MM BETA- REMARK 210 MERCAPTOETHANOL, 2 MM TCEP, 95% REMARK 210 H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCA; 3D HBHA(CO)NH; REMARK 210 3D HCCH-TOCSY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, ABACUS, SPARKY REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-20 REMARK 470 RES CSSEQI ATOMS REMARK 470 PRO A 300 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 153 98.58 -59.21 REMARK 500 1 PRO A 164 91.82 -51.63 REMARK 500 1 ASP A 167 -165.94 -103.74 REMARK 500 1 SER A 172 77.02 55.40 REMARK 500 1 SER A 174 97.13 -62.29 REMARK 500 1 ALA A 208 99.36 -68.60 REMARK 500 1 ALA A 252 145.97 -171.27 REMARK 500 1 LEU A 261 -152.56 -83.23 REMARK 500 1 ASP A 268 68.58 60.35 REMARK 500 1 PHE A 273 32.00 -93.21 REMARK 500 1 PRO A 283 94.38 -55.25 REMARK 500 2 GLU A 153 96.78 -67.35 REMARK 500 2 ARG A 158 146.44 -171.28 REMARK 500 2 CYS A 170 -171.48 73.03 REMARK 500 2 ALA A 177 -71.43 -80.82 REMARK 500 2 LEU A 178 -74.83 -147.88 REMARK 500 2 ASP A 181 44.74 -82.89 REMARK 500 2 ARG A 245 149.95 -172.02 REMARK 500 2 ASP A 268 75.70 60.08 REMARK 500 2 PHE A 273 45.13 -86.44 REMARK 500 2 GLU A 276 44.26 -89.00 REMARK 500 2 ASP A 291 -153.84 -99.52 REMARK 500 3 VAL A 137 2.47 -68.22 REMARK 500 3 GLU A 153 93.94 -65.78 REMARK 500 3 PRO A 164 105.66 -48.21 REMARK 500 3 ASP A 167 -48.99 75.00 REMARK 500 3 PRO A 169 -162.92 -67.20 REMARK 500 3 CYS A 170 136.38 71.93 REMARK 500 3 SER A 174 86.09 52.78 REMARK 500 3 ALA A 177 17.69 59.47 REMARK 500 3 LEU A 178 -58.46 -141.44 REMARK 500 3 TYR A 188 105.60 -57.43 REMARK 500 3 ALA A 208 107.47 -58.61 REMARK 500 3 ASP A 263 -51.76 -123.20 REMARK 500 3 PHE A 273 36.71 -96.15 REMARK 500 3 PRO A 283 131.91 -37.36 REMARK 500 3 PRO A 293 109.25 -49.11 REMARK 500 3 ARG A 296 -71.34 -74.88 REMARK 500 3 LYS A 297 115.62 57.26 REMARK 500 4 ARG A 158 146.30 -171.51 REMARK 500 4 PRO A 164 89.66 -57.77 REMARK 500 4 PRO A 176 97.54 -52.01 REMARK 500 4 GLU A 179 80.61 56.71 REMARK 500 4 ALA A 208 96.59 -59.75 REMARK 500 4 ARG A 235 170.19 -55.39 REMARK 500 4 ALA A 252 130.20 -170.84 REMARK 500 4 PRO A 283 88.74 -11.26 REMARK 500 4 PRO A 288 -154.34 -86.62 REMARK 500 4 ARG A 295 144.74 66.60 REMARK 500 5 ASN A 138 -38.13 175.20 REMARK 500 REMARK 500 THIS ENTRY HAS 236 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30703 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE TTD AND LINKER REGION OF UHRF1 DBREF 6VED A 133 300 UNP Q96T88 UHRF1_HUMAN 146 313 SEQRES 1 A 168 GLY LEU TYR LYS VAL ASN GLU TYR VAL ASP ALA ARG ASP SEQRES 2 A 168 THR ASN MET GLY ALA TRP PHE GLU ALA GLN VAL VAL ARG SEQRES 3 A 168 VAL THR ARG LYS ALA PRO SER ARG ASP GLU PRO CYS SER SEQRES 4 A 168 SER THR SER ARG PRO ALA LEU GLU GLU ASP VAL ILE TYR SEQRES 5 A 168 HIS VAL LYS TYR ASP ASP TYR PRO GLU ASN GLY VAL VAL SEQRES 6 A 168 GLN MET ASN SER ARG ASP VAL ARG ALA ARG ALA ARG THR SEQRES 7 A 168 ILE ILE LYS TRP GLN ASP LEU GLU VAL GLY GLN VAL VAL SEQRES 8 A 168 MET LEU ASN TYR ASN PRO ASP ASN PRO LYS GLU ARG GLY SEQRES 9 A 168 PHE TRP TYR ASP ALA GLU ILE SER ARG LYS ARG GLU THR SEQRES 10 A 168 ARG THR ALA ARG GLU LEU TYR ALA ASN VAL VAL LEU GLY SEQRES 11 A 168 ASP ASP SER LEU ASN ASP CYS ARG ILE ILE PHE VAL ASP SEQRES 12 A 168 GLU VAL PHE LYS ILE GLU ARG PRO GLY GLU GLY SER PRO SEQRES 13 A 168 MET VAL ASP ASN PRO MET ARG ARG LYS SER GLY PRO HELIX 1 AA1 TYR A 191 ASN A 194 5 4 HELIX 2 AA2 LYS A 213 LEU A 217 5 5 SHEET 1 AA1 5 VAL A 196 MET A 199 0 SHEET 2 AA1 5 ILE A 183 TYR A 188 -1 N VAL A 186 O VAL A 197 SHEET 3 AA1 5 TRP A 151 THR A 160 -1 N GLN A 155 O LYS A 187 SHEET 4 AA1 5 GLU A 139 ARG A 144 -1 N ALA A 143 O PHE A 152 SHEET 5 AA1 5 VAL A 204 ARG A 205 -1 O ARG A 205 N ASP A 142 SHEET 1 AA2 5 SER A 265 ARG A 270 0 SHEET 2 AA2 5 ARG A 253 VAL A 260 -1 N ALA A 257 O CYS A 269 SHEET 3 AA2 5 PHE A 237 GLU A 248 -1 N ARG A 245 O TYR A 256 SHEET 4 AA2 5 VAL A 222 TYR A 227 -1 N LEU A 225 O TYR A 239 SHEET 5 AA2 5 PHE A 278 LYS A 279 -1 O PHE A 278 N MET A 224 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1