HEADER PEPTIDE BINDING PROTEIN 31-DEC-19 6VEE TITLE SOLUTION STRUCTURE OF THE TTD AND LINKER REGION OF MOUSE UHRF1 (NP95) COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE UHRF1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NUCLEAR PROTEIN 95,NUCLEAR ZINC FINGER PROTEIN NP95,RING- COMPND 5 TYPE E3 UBIQUITIN TRANSFERASE UHRF1,UBIQUITIN-LIKE PHD AND RING COMPND 6 FINGER DOMAIN-CONTAINING PROTEIN 1,MUHRF1,UBIQUITIN-LIKE-CONTAINING COMPND 7 PHD AND RING FINGER DOMAINS PROTEIN 1; COMPND 8 EC: 2.3.2.27; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: UHRF1, NP95; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HISTONE, TANDEM TUDOR DOMAIN, NP95, UHRF1, H3K9ME3, PEPTIDE BINDING KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.LEMAK,S.HOULISTON,S.DUAN,C.H.ARROWSMITH REVDAT 5 15-MAY-24 6VEE 1 REMARK REVDAT 4 14-JUN-23 6VEE 1 REMARK REVDAT 3 26-AUG-20 6VEE 1 JRNL REVDAT 2 15-JUL-20 6VEE 1 JRNL REVDAT 1 17-JUN-20 6VEE 0 JRNL AUTH M.TAUBER,S.KREUZ,A.LEMAK,P.MANDAL,Z.YERKESH,A.VELUCHAMY, JRNL AUTH 2 B.AL-GASHGARI,A.ALJAHANI,L.V.CORTES-MEDINA,D.AZHIBEK,L.FAN, JRNL AUTH 3 M.S.ONG,S.DUAN,S.HOULISTON,C.H.ARROWSMITH,W.FISCHLE JRNL TITL ALTERNATIVE SPLICING AND ALLOSTERIC REGULATION MODULATE THE JRNL TITL 2 CHROMATIN BINDING OF UHRF1. JRNL REF NUCLEIC ACIDS RES. V. 48 7728 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32609811 JRNL DOI 10.1093/NAR/GKAA520 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VEE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246277. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 250 UM [U-99% 13C; U-99% 15N] REMARK 210 TTD-LINKER, 50 MM SODIUM REMARK 210 PHOSPHATE, 5 MM DTT, 5 MM TCEP, REMARK 210 2 MM BETA-MERCAPTOETHANOL, 150 REMARK 210 MM SODIUM CHLORIDE, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D CBCA(CO)NH; 3D HNCA; REMARK 210 3D HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE II; AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, ABACUS, SPARKY REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 119 REMARK 465 HIS A 120 REMARK 465 MET A 121 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-20 REMARK 470 RES CSSEQI ATOMS REMARK 470 PRO A 305 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 162 44.18 -90.29 REMARK 500 1 ASP A 163 95.64 70.23 REMARK 500 1 PRO A 165 61.45 -7.78 REMARK 500 1 SER A 167 -50.13 -152.14 REMARK 500 1 SER A 169 94.63 68.63 REMARK 500 1 SER A 174 170.32 -59.49 REMARK 500 1 ASP A 260 68.19 62.07 REMARK 500 1 ARG A 283 82.29 58.74 REMARK 500 1 PRO A 285 40.56 -108.45 REMARK 500 2 SER A 167 -86.27 -93.28 REMARK 500 2 SER A 168 3.65 -168.72 REMARK 500 2 SER A 174 177.15 -55.18 REMARK 500 2 GLU A 175 41.90 -87.27 REMARK 500 2 ASP A 176 -74.92 -118.82 REMARK 500 2 MET A 269 -70.68 -48.44 REMARK 500 2 GLU A 282 -77.69 -119.42 REMARK 500 2 ARG A 283 -55.05 174.75 REMARK 500 2 THR A 300 -58.56 -133.10 REMARK 500 3 SER A 169 72.80 -103.37 REMARK 500 3 SER A 174 -178.60 -59.11 REMARK 500 3 ASP A 177 35.42 -93.65 REMARK 500 3 ARG A 205 -59.22 -121.75 REMARK 500 3 PRO A 228 5.06 -68.52 REMARK 500 3 ASN A 259 36.75 -84.28 REMARK 500 3 LYS A 302 93.42 -65.85 REMARK 500 4 PRO A 165 109.14 -51.71 REMARK 500 4 SER A 169 -71.83 -106.20 REMARK 500 4 ALA A 170 132.82 -178.19 REMARK 500 4 ARG A 203 101.86 -57.14 REMARK 500 4 ARG A 205 -40.08 -135.13 REMARK 500 4 ASN A 259 41.15 -91.58 REMARK 500 4 ASP A 260 -17.74 73.38 REMARK 500 4 PHE A 270 -177.99 -172.74 REMARK 500 4 SER A 303 -161.32 65.49 REMARK 500 5 PRO A 165 176.81 -55.12 REMARK 500 5 SER A 167 44.31 -82.91 REMARK 500 5 ASP A 176 56.42 -119.29 REMARK 500 5 ASP A 177 -34.58 -157.38 REMARK 500 5 TYR A 187 54.75 -140.21 REMARK 500 5 ARG A 205 -46.11 -167.41 REMARK 500 5 TYR A 227 104.83 -162.04 REMARK 500 5 LEU A 258 -88.58 -59.33 REMARK 500 5 ASP A 260 -86.66 -83.29 REMARK 500 5 PRO A 280 76.34 -67.95 REMARK 500 5 LYS A 281 -41.02 178.64 REMARK 500 5 PRO A 293 -179.74 -69.46 REMARK 500 6 SER A 174 174.28 -59.71 REMARK 500 6 ARG A 205 -35.10 -142.24 REMARK 500 6 ARG A 283 149.55 71.19 REMARK 500 6 THR A 300 107.14 -48.84 REMARK 500 REMARK 500 THIS ENTRY HAS 157 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30704 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE TTD AND LINKER REGION OF MOUSE UHRF1 REMARK 900 (NP95) DBREF 6VEE A 122 305 UNP Q8VDF2 UHRF1_MOUSE 122 305 SEQADV 6VEE GLY A 119 UNP Q8VDF2 EXPRESSION TAG SEQADV 6VEE HIS A 120 UNP Q8VDF2 EXPRESSION TAG SEQADV 6VEE MET A 121 UNP Q8VDF2 EXPRESSION TAG SEQRES 1 A 187 GLY HIS MET VAL TRP GLU ASP THR ASP LEU GLY LEU TYR SEQRES 2 A 187 LYS VAL ASN GLU TYR VAL ASP VAL ARG ASP ASN ILE PHE SEQRES 3 A 187 GLY ALA TRP PHE GLU ALA GLN VAL VAL GLN VAL GLN LYS SEQRES 4 A 187 ARG ALA LEU SER GLU ASP GLU PRO CYS SER SER SER ALA SEQRES 5 A 187 VAL LYS THR SER GLU ASP ASP ILE MET TYR HIS VAL LYS SEQRES 6 A 187 TYR ASP ASP TYR PRO GLU HIS GLY VAL ASP ILE VAL LYS SEQRES 7 A 187 ALA LYS ASN VAL ARG ALA ARG ALA ARG THR VAL ILE PRO SEQRES 8 A 187 TRP GLU ASN LEU GLU VAL GLY GLN VAL VAL MET ALA ASN SEQRES 9 A 187 TYR ASN VAL ASP TYR PRO ARG LYS ARG GLY PHE TRP TYR SEQRES 10 A 187 ASP VAL GLU ILE CYS ARG LYS ARG GLN THR ARG THR ALA SEQRES 11 A 187 ARG GLU LEU TYR GLY ASN ILE ARG LEU LEU ASN ASP SER SEQRES 12 A 187 GLN LEU ASN ASN CYS ARG ILE MET PHE VAL ASP GLU VAL SEQRES 13 A 187 LEU MET ILE GLU LEU PRO LYS GLU ARG ARG PRO LEU ILE SEQRES 14 A 187 ALA SER PRO SER GLN PRO PRO PRO ALA LEU ARG ASN THR SEQRES 15 A 187 GLY LYS SER GLY PRO HELIX 1 AA1 TYR A 187 GLY A 191 5 5 HELIX 2 AA2 PRO A 209 LEU A 213 5 5 SHEET 1 AA1 5 ASP A 193 LYS A 196 0 SHEET 2 AA1 5 MET A 179 TYR A 184 -1 N VAL A 182 O ASP A 193 SHEET 3 AA1 5 TRP A 147 GLN A 156 -1 N GLN A 154 O HIS A 181 SHEET 4 AA1 5 TYR A 136 ARG A 140 -1 N VAL A 137 O ALA A 150 SHEET 5 AA1 5 VAL A 200 ALA A 202 -1 O ARG A 201 N ASP A 138 SHEET 1 AA2 5 SER A 261 ARG A 267 0 SHEET 2 AA2 5 ALA A 248 LEU A 257 -1 N LEU A 257 O SER A 261 SHEET 3 AA2 5 PHE A 233 THR A 245 -1 N GLU A 238 O ASN A 254 SHEET 4 AA2 5 VAL A 218 TYR A 223 -1 N VAL A 219 O VAL A 237 SHEET 5 AA2 5 VAL A 274 MET A 276 -1 O LEU A 275 N MET A 220 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1