HEADER LYASE 03-JAN-20 6VFD TITLE TRYPTOPHAN SYNTHASE MUTANT Q114A IN COMPLEX WITH CESIUM ION AT THE TITLE 2 METAL COORDINATION SITE AND 2-AMINOPHENOL QUINONOID AT THE ENZYME TITLE 3 BETA SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRYPTOPHAN SYNTHASE ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 EC: 4.2.1.20; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TRYPTOPHAN SYNTHASE BETA CHAIN; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: TRYPTOPHAN SYNTHASE BETA CHAIN (EC),TRYPTOPHAN SYNTHASE COMPND 10 SUBUNIT BETA; COMPND 11 EC: 4.2.1.20; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_COMMON: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 4 TYPHIMURIUM; SOURCE 5 ORGANISM_TAXID: 90371; SOURCE 6 GENE: TRPA, DD95_04145; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: CB149; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PBR322; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PEBA-10; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 14 ORGANISM_TAXID: 90371; SOURCE 15 GENE: TRPB, AAP89_02045, ABO94_19170, AF480_03975, AF488_06015, SOURCE 16 AF489_02660, AIC76_02215, AU613_22485, AXR84_21850, AXU58_18720, SOURCE 17 C2253_17845, CD48_01255, CE87_00490, CET98_00490, CQG18_02715, SOURCE 18 CVR97_02985, D4369_03495, D4380_02480, D4401_03780, D4E62_00155, SOURCE 19 D6360_05135, D7F20_01770, D7H43_22440, DD95_04150, DJ388_09100, SOURCE 20 DKJ11_03255, DKU57_01740, DLM31_00170, DNV30_02640, DO698_02865, SOURCE 21 DOJ90_01720, DOQ88_05395, DQ848_22185, DRM14_00170, DSF69_00170, SOURCE 22 DSR36_00155, DUW48_00170, E2F01_02625, EBO41_01950, EBP31_03920, SOURCE 23 EGU67_04975, EHB24_02705, EHC98_05585, EIW53_01745, F0A00_14785, SOURCE 24 F0A01_15745, F0A02_08960, F0A03_20195, F0A04_22070, F0A05_01740, SOURCE 25 F0A06_01905, F0A07_12870, F0A08_01425, F0U66_12100, FKA80_16460, SOURCE 26 FKA81_16995, FKA82_17080, FKA83_17705, FKA84_18900, FKA85_16755, SOURCE 27 FKA86_15095, FKA87_20420, FKA88_00465, FKA89_17495, FKA90_04050, SOURCE 28 FKA91_03380, FKA92_00475, FKA93_04425, FKA94_02440, FKA95_00475, SOURCE 29 FKA96_03185, FKA97_05420, FKA98_04655, FKA99_00465, FKB00_08210, SOURCE 30 FKB01_00475, FKB02_00470, FKB03_06095, FKB12_08200, FKB15_09545, SOURCE 31 FKB19_17260, FYL57_17810, FYL66_01025, FYL68_08225, FYL69_04355, SOURCE 32 FYL71_20365, FYL73_06975, FYL74_10415, FYL75_12085, FYL77_17200, SOURCE 33 FYL81_18315, FYL84_11395, FYL90_05690, FYL92_04810, FYL93_03130, SOURCE 34 FYL94_11585, FYL96_18520, FYM06_17485, FYM08_08630, FYM09_19335, SOURCE 35 FYM12_03600, FYM54_08665, FZ992_19115, FZ993_02220, FZ994_08290, SOURCE 36 FZ995_12310, FZ996_09230, FZ997_15170, FZ998_14625, FZ999_17455, SOURCE 37 GW08_03175, JO10_00490, LZ63_02660, NG18_14010, NU83_02660, SOURCE 38 QA89_14465, QB40_00170, QD15_05225, RJ78_16500, SAMEA4398682_02247, SOURCE 39 UPM260_1493, Y934_00965, YG50_13195, YI33_00155, YR17_00170, SOURCE 40 YT65_03520, ZA53_18735, ZB89_05455, ZC54_00170; SOURCE 41 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 42 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 43 EXPRESSION_SYSTEM_STRAIN: CB149; SOURCE 44 EXPRESSION_SYSTEM_VECTOR_TYPE: PBR322; SOURCE 45 EXPRESSION_SYSTEM_PLASMID: PEBA-10 KEYWDS PROTEIN COMPLEX, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR E.HILARIO,L.FAN,M.F.DUNN,L.J.MUELLER REVDAT 2 11-OCT-23 6VFD 1 REMARK REVDAT 1 05-AUG-20 6VFD 0 JRNL AUTH E.HILARIO,L.FAN,M.F.DUNN,L.J.MUELLER JRNL TITL TRYPTOPHAN SYNTHASE MUTANT Q114A IN COMPLEX WITH CESIUM ION JRNL TITL 2 AT THE METAL COORDINATION SITE AND 2-AMINOPHENOL QUINONOID JRNL TITL 3 AT THE ENZYME BETA SITE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 75065 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3952 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5423 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 350 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4903 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 118 REMARK 3 SOLVENT ATOMS : 700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.25000 REMARK 3 B22 (A**2) : -0.31000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.114 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.475 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5254 ; 0.005 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7116 ; 1.285 ; 1.632 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 682 ; 6.313 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 261 ;32.541 ;22.031 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 873 ;14.441 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;16.052 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 678 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4059 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 29 REMARK 3 ORIGIN FOR THE GROUP (A): 51.8750 12.0767 11.9259 REMARK 3 T TENSOR REMARK 3 T11: 0.2245 T22: 0.1734 REMARK 3 T33: 0.2899 T12: -0.0877 REMARK 3 T13: -0.0199 T23: 0.0338 REMARK 3 L TENSOR REMARK 3 L11: 5.4314 L22: 2.1670 REMARK 3 L33: 2.0359 L12: -1.0227 REMARK 3 L13: -0.3187 L23: 0.0218 REMARK 3 S TENSOR REMARK 3 S11: 0.1115 S12: -0.2665 S13: 0.1652 REMARK 3 S21: 0.2553 S22: -0.0723 S23: -0.3153 REMARK 3 S31: 0.1199 S32: 0.4026 S33: -0.0393 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 159 REMARK 3 ORIGIN FOR THE GROUP (A): 37.7836 9.9818 8.6885 REMARK 3 T TENSOR REMARK 3 T11: 0.0965 T22: 0.0909 REMARK 3 T33: 0.1564 T12: -0.0340 REMARK 3 T13: 0.0384 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 2.2063 L22: 3.2863 REMARK 3 L33: 0.8715 L12: 1.1621 REMARK 3 L13: -0.5296 L23: -0.1241 REMARK 3 S TENSOR REMARK 3 S11: 0.2411 S12: -0.1494 S13: 0.2772 REMARK 3 S21: 0.2300 S22: -0.1764 S23: 0.0913 REMARK 3 S31: -0.2100 S32: 0.0464 S33: -0.0647 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 160 A 177 REMARK 3 ORIGIN FOR THE GROUP (A): 46.4692 -4.8291 16.0060 REMARK 3 T TENSOR REMARK 3 T11: 0.1105 T22: 0.2169 REMARK 3 T33: 0.2390 T12: -0.0423 REMARK 3 T13: -0.0857 T23: 0.0486 REMARK 3 L TENSOR REMARK 3 L11: 1.5990 L22: 6.4578 REMARK 3 L33: 5.7879 L12: -0.1399 REMARK 3 L13: -1.5926 L23: -1.1807 REMARK 3 S TENSOR REMARK 3 S11: -0.0079 S12: -0.2686 S13: -0.2080 REMARK 3 S21: 0.1497 S22: -0.2819 S23: -0.1276 REMARK 3 S31: 0.2592 S32: 0.1715 S33: 0.2898 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 193 A 234 REMARK 3 ORIGIN FOR THE GROUP (A): 52.2478 3.0390 23.4314 REMARK 3 T TENSOR REMARK 3 T11: 0.3343 T22: 0.3976 REMARK 3 T33: 0.3426 T12: -0.0166 REMARK 3 T13: -0.0803 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 1.4221 L22: 4.6785 REMARK 3 L33: 1.6616 L12: 0.0410 REMARK 3 L13: 0.6921 L23: 0.7942 REMARK 3 S TENSOR REMARK 3 S11: -0.0882 S12: -0.3707 S13: -0.2050 REMARK 3 S21: 0.9064 S22: 0.0196 S23: 0.1399 REMARK 3 S31: 0.1706 S32: 0.2654 S33: 0.0686 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 235 A 247 REMARK 3 ORIGIN FOR THE GROUP (A): 37.4076 24.1144 22.7378 REMARK 3 T TENSOR REMARK 3 T11: 0.3566 T22: 0.2240 REMARK 3 T33: 0.3053 T12: 0.0007 REMARK 3 T13: 0.0121 T23: -0.0283 REMARK 3 L TENSOR REMARK 3 L11: 4.2399 L22: 7.2547 REMARK 3 L33: 0.4706 L12: -3.2535 REMARK 3 L13: 0.1954 L23: 1.3139 REMARK 3 S TENSOR REMARK 3 S11: -0.0367 S12: -0.1797 S13: -0.0875 REMARK 3 S21: 0.3690 S22: 0.0398 S23: 0.1073 REMARK 3 S31: 0.0445 S32: -0.0503 S33: -0.0031 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 248 A 268 REMARK 3 ORIGIN FOR THE GROUP (A): 49.3209 24.3667 20.9129 REMARK 3 T TENSOR REMARK 3 T11: 0.3376 T22: 0.2549 REMARK 3 T33: 0.3922 T12: -0.0662 REMARK 3 T13: -0.0221 T23: -0.0430 REMARK 3 L TENSOR REMARK 3 L11: 6.4247 L22: 5.9447 REMARK 3 L33: 2.5994 L12: -6.0492 REMARK 3 L13: 3.6025 L23: -3.3692 REMARK 3 S TENSOR REMARK 3 S11: 0.0282 S12: -0.0354 S13: 0.4801 REMARK 3 S21: 0.1134 S22: -0.0291 S23: -0.3784 REMARK 3 S31: -0.1800 S32: 0.1588 S33: 0.0009 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 37 REMARK 3 ORIGIN FOR THE GROUP (A): 27.6658 -12.8750 19.6785 REMARK 3 T TENSOR REMARK 3 T11: 0.0530 T22: 0.1013 REMARK 3 T33: 0.0810 T12: 0.0203 REMARK 3 T13: -0.0276 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 2.1492 L22: 0.9899 REMARK 3 L33: 2.6133 L12: 0.8303 REMARK 3 L13: -0.8796 L23: -0.8778 REMARK 3 S TENSOR REMARK 3 S11: 0.0135 S12: -0.1189 S13: -0.2515 REMARK 3 S21: 0.0864 S22: -0.0896 S23: -0.2462 REMARK 3 S31: -0.0207 S32: 0.3999 S33: 0.0761 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 38 B 70 REMARK 3 ORIGIN FOR THE GROUP (A): 1.2029 -17.4610 27.9035 REMARK 3 T TENSOR REMARK 3 T11: 0.0389 T22: 0.1184 REMARK 3 T33: 0.0255 T12: -0.0415 REMARK 3 T13: -0.0077 T23: 0.0504 REMARK 3 L TENSOR REMARK 3 L11: 0.7812 L22: 0.9065 REMARK 3 L33: 2.3031 L12: -0.0435 REMARK 3 L13: -0.1480 L23: -0.3316 REMARK 3 S TENSOR REMARK 3 S11: 0.0442 S12: -0.2596 S13: -0.1308 REMARK 3 S21: -0.0033 S22: -0.0396 S23: -0.0275 REMARK 3 S31: 0.2207 S32: -0.1807 S33: -0.0046 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 71 B 126 REMARK 3 ORIGIN FOR THE GROUP (A): 10.2106 -8.5282 30.3866 REMARK 3 T TENSOR REMARK 3 T11: 0.0596 T22: 0.1013 REMARK 3 T33: 0.0237 T12: -0.0297 REMARK 3 T13: 0.0089 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 1.0327 L22: 0.6148 REMARK 3 L33: 2.5716 L12: 0.3446 REMARK 3 L13: 0.3640 L23: 0.4859 REMARK 3 S TENSOR REMARK 3 S11: 0.0482 S12: -0.2250 S13: 0.0317 REMARK 3 S21: -0.0011 S22: 0.0008 S23: -0.0712 REMARK 3 S31: -0.2502 S32: 0.2342 S33: -0.0490 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 127 B 165 REMARK 3 ORIGIN FOR THE GROUP (A): 13.6490 7.1619 32.1052 REMARK 3 T TENSOR REMARK 3 T11: 0.3630 T22: 0.1316 REMARK 3 T33: 0.1923 T12: -0.0544 REMARK 3 T13: 0.0187 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 1.3470 L22: 0.9288 REMARK 3 L33: 2.8020 L12: 0.5988 REMARK 3 L13: -0.7543 L23: -0.5106 REMARK 3 S TENSOR REMARK 3 S11: 0.1566 S12: 0.0996 S13: 0.2939 REMARK 3 S21: -0.0093 S22: -0.0285 S23: 0.1496 REMARK 3 S31: -0.6403 S32: 0.0259 S33: -0.1281 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 166 B 244 REMARK 3 ORIGIN FOR THE GROUP (A): 12.5555 -11.3102 21.2453 REMARK 3 T TENSOR REMARK 3 T11: 0.0463 T22: 0.0460 REMARK 3 T33: 0.0068 T12: 0.0069 REMARK 3 T13: -0.0038 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 2.8924 L22: 0.7005 REMARK 3 L33: 1.6563 L12: 0.4540 REMARK 3 L13: -0.2796 L23: -0.0786 REMARK 3 S TENSOR REMARK 3 S11: 0.0832 S12: -0.1717 S13: 0.0694 REMARK 3 S21: 0.0334 S22: -0.0803 S23: -0.0439 REMARK 3 S31: -0.0658 S32: 0.2070 S33: -0.0029 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 245 B 273 REMARK 3 ORIGIN FOR THE GROUP (A): 5.9471 -4.2018 7.4932 REMARK 3 T TENSOR REMARK 3 T11: 0.0374 T22: 0.0340 REMARK 3 T33: 0.0231 T12: 0.0066 REMARK 3 T13: 0.0009 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.2199 L22: 3.5356 REMARK 3 L33: 1.3619 L12: 0.1530 REMARK 3 L13: -0.0247 L23: -0.7004 REMARK 3 S TENSOR REMARK 3 S11: -0.0317 S12: 0.0974 S13: 0.0220 REMARK 3 S21: -0.3139 S22: -0.0026 S23: -0.0998 REMARK 3 S31: 0.0042 S32: 0.0394 S33: 0.0343 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 274 B 295 REMARK 3 ORIGIN FOR THE GROUP (A): 20.8048 2.8943 8.4295 REMARK 3 T TENSOR REMARK 3 T11: 0.0879 T22: 0.1253 REMARK 3 T33: 0.1534 T12: -0.0083 REMARK 3 T13: 0.0457 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 3.9763 L22: 4.4893 REMARK 3 L33: 0.2355 L12: 0.3412 REMARK 3 L13: 0.3769 L23: -0.9040 REMARK 3 S TENSOR REMARK 3 S11: 0.0609 S12: 0.0959 S13: 0.7209 REMARK 3 S21: 0.0784 S22: -0.0702 S23: 0.2957 REMARK 3 S31: -0.0220 S32: 0.0376 S33: 0.0094 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 296 B 322 REMARK 3 ORIGIN FOR THE GROUP (A): 11.1475 -3.9881 11.3209 REMARK 3 T TENSOR REMARK 3 T11: 0.0187 T22: 0.0348 REMARK 3 T33: 0.0581 T12: 0.0040 REMARK 3 T13: 0.0089 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 2.4539 L22: 0.8417 REMARK 3 L33: 1.2182 L12: -1.1664 REMARK 3 L13: -0.2143 L23: 0.2774 REMARK 3 S TENSOR REMARK 3 S11: 0.0516 S12: -0.0229 S13: 0.2686 REMARK 3 S21: -0.0059 S22: 0.0460 S23: -0.1993 REMARK 3 S31: -0.0860 S32: 0.1099 S33: -0.0977 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 323 B 365 REMARK 3 ORIGIN FOR THE GROUP (A): -6.3773 -2.8854 13.8764 REMARK 3 T TENSOR REMARK 3 T11: 0.0252 T22: 0.0235 REMARK 3 T33: 0.0215 T12: 0.0140 REMARK 3 T13: -0.0101 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.3006 L22: 0.8105 REMARK 3 L33: 2.2005 L12: 0.5627 REMARK 3 L13: -0.4675 L23: -0.0794 REMARK 3 S TENSOR REMARK 3 S11: 0.0111 S12: 0.0575 S13: 0.1232 REMARK 3 S21: 0.0131 S22: 0.0028 S23: 0.0784 REMARK 3 S31: -0.1151 S32: -0.2201 S33: -0.0139 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 366 B 396 REMARK 3 ORIGIN FOR THE GROUP (A): -6.9124 -0.3426 18.6466 REMARK 3 T TENSOR REMARK 3 T11: 0.0919 T22: 0.0849 REMARK 3 T33: 0.1061 T12: 0.0086 REMARK 3 T13: 0.0306 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 2.1510 L22: 1.5924 REMARK 3 L33: 3.7091 L12: 0.2295 REMARK 3 L13: 0.8902 L23: 0.6475 REMARK 3 S TENSOR REMARK 3 S11: -0.0441 S12: -0.1159 S13: 0.4100 REMARK 3 S21: 0.1267 S22: 0.0385 S23: 0.1757 REMARK 3 S31: -0.4533 S32: -0.1807 S33: 0.0056 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6VFD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246288. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6-8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC VARIMAX HF ARCSEC REMARK 200 OPTICS : VARIMAX CONFOCAL MAX-FLUX REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.2.2 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93786 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 91.212 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : 0.36000 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 7.0.078 REMARK 200 STARTING MODEL: 4HPJ REMARK 200 REMARK 200 REMARK: LARGE PLATE-LIKE CRYSTAL (200 X 100 X 100) REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM BICINE-CSOH, 10% PEG 8,000, 4 MM REMARK 280 SPERMINE, PH 7.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 91.53950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.67000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 91.53950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.67000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -387.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -5.70188 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 67.19853 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CS CS B 416 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 178 REMARK 465 ARG A 179 REMARK 465 SER A 180 REMARK 465 GLY A 181 REMARK 465 VAL A 182 REMARK 465 THR A 183 REMARK 465 GLY A 184 REMARK 465 ALA A 185 REMARK 465 GLU A 186 REMARK 465 ASN A 187 REMARK 465 ARG A 188 REMARK 465 GLY A 189 REMARK 465 ALA A 190 REMARK 465 LEU A 191 REMARK 465 PRO A 192 REMARK 465 MET B 1 REMARK 465 ILE B 397 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 367 O HOH B 501 1.68 REMARK 500 O HOH B 622 O HOH B 721 1.87 REMARK 500 N LYS B 167 O HOH B 502 1.90 REMARK 500 OE1 GLU B 295 O HOH B 503 1.98 REMARK 500 NH2 ARG B 222 O HOH B 504 2.01 REMARK 500 CB ASP B 138 O HOH B 505 2.14 REMARK 500 O HOH A 450 O HOH A 471 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 235 -39.11 -144.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 630 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 631 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A 632 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A 633 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH B 963 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH B 964 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH B 965 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH B 966 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH B 967 DISTANCE = 7.25 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS B 416 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 54 O REMARK 620 2 GLY B 54 O 0.0 REMARK 620 3 PRO B 56 O 65.0 65.0 REMARK 620 4 PRO B 56 O 65.0 65.0 0.0 REMARK 620 5 DMS B 409 O 89.2 89.2 101.6 101.6 REMARK 620 6 DMS B 409 O 89.2 89.2 101.6 101.6 0.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS B 414 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 66 O REMARK 620 2 THR B 66 OG1 61.4 REMARK 620 3 THR B 69 O 72.6 126.2 REMARK 620 4 THR B 71 O 88.6 63.2 90.7 REMARK 620 5 HOH B 596 O 76.0 60.0 133.8 121.7 REMARK 620 6 HOH B 850 O 140.5 139.6 69.4 81.4 140.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS B 415 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 231 O REMARK 620 2 GLU B 256 OE2 123.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS B 415 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 232 O REMARK 620 2 GLY B 268 O 169.4 REMARK 620 3 LEU B 304 O 93.3 91.0 REMARK 620 4 PHE B 306 O 98.8 91.5 81.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SER A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1D0 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SER B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CS B 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CS B 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CS B 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 419 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 420 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 421 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 422 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 424 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 426 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 427 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 428 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 429 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 430 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HPJ RELATED DB: PDB REMARK 900 2-AMINOPHENOL QUINONOID AT THE BETA SITE REMARK 900 RELATED ID: 4KKX RELATED DB: PDB REMARK 900 2-AMINOPHENOL QUINONOID AT THE BETA SITE REMARK 900 RELATED ID: 6DUC RELATED DB: PDB REMARK 900 2-AMINOPHENOL QUINONOID AT THE BETA SITE DBREF1 6VFD A 1 268 UNP A0A0D6FWC1_SALTM DBREF2 6VFD A A0A0D6FWC1 1 268 DBREF1 6VFD B 1 397 UNP A0A5K1VAP1_SALTM DBREF2 6VFD B A0A5K1VAP1 1 397 SEQADV 6VFD ALA B 114 UNP A0A5K1VAP GLN 114 ENGINEERED MUTATION SEQRES 1 A 268 MET GLU ARG TYR GLU ASN LEU PHE ALA GLN LEU ASN ASP SEQRES 2 A 268 ARG ARG GLU GLY ALA PHE VAL PRO PHE VAL THR LEU GLY SEQRES 3 A 268 ASP PRO GLY ILE GLU GLN SER LEU LYS ILE ILE ASP THR SEQRES 4 A 268 LEU ILE ASP ALA GLY ALA ASP ALA LEU GLU LEU GLY VAL SEQRES 5 A 268 PRO PHE SER ASP PRO LEU ALA ASP GLY PRO THR ILE GLN SEQRES 6 A 268 ASN ALA ASN LEU ARG ALA PHE ALA ALA GLY VAL THR PRO SEQRES 7 A 268 ALA GLN CYS PHE GLU MET LEU ALA LEU ILE ARG GLU LYS SEQRES 8 A 268 HIS PRO THR ILE PRO ILE GLY LEU LEU MET TYR ALA ASN SEQRES 9 A 268 LEU VAL PHE ASN ASN GLY ILE ASP ALA PHE TYR ALA ARG SEQRES 10 A 268 CYS GLU GLN VAL GLY VAL ASP SER VAL LEU VAL ALA ASP SEQRES 11 A 268 VAL PRO VAL GLU GLU SER ALA PRO PHE ARG GLN ALA ALA SEQRES 12 A 268 LEU ARG HIS ASN ILE ALA PRO ILE PHE ILE CYS PRO PRO SEQRES 13 A 268 ASN ALA ASP ASP ASP LEU LEU ARG GLN VAL ALA SER TYR SEQRES 14 A 268 GLY ARG GLY TYR THR TYR LEU LEU SER ARG SER GLY VAL SEQRES 15 A 268 THR GLY ALA GLU ASN ARG GLY ALA LEU PRO LEU HIS HIS SEQRES 16 A 268 LEU ILE GLU LYS LEU LYS GLU TYR HIS ALA ALA PRO ALA SEQRES 17 A 268 LEU GLN GLY PHE GLY ILE SER SER PRO GLU GLN VAL SER SEQRES 18 A 268 ALA ALA VAL ARG ALA GLY ALA ALA GLY ALA ILE SER GLY SEQRES 19 A 268 SER ALA ILE VAL LYS ILE ILE GLU LYS ASN LEU ALA SER SEQRES 20 A 268 PRO LYS GLN MET LEU ALA GLU LEU ARG SER PHE VAL SER SEQRES 21 A 268 ALA MET LYS ALA ALA SER ARG ALA SEQRES 1 B 397 MET THR THR LEU LEU ASN PRO TYR PHE GLY GLU PHE GLY SEQRES 2 B 397 GLY MET TYR VAL PRO GLN ILE LEU MET PRO ALA LEU ASN SEQRES 3 B 397 GLN LEU GLU GLU ALA PHE VAL SER ALA GLN LYS ASP PRO SEQRES 4 B 397 GLU PHE GLN ALA GLN PHE ALA ASP LEU LEU LYS ASN TYR SEQRES 5 B 397 ALA GLY ARG PRO THR ALA LEU THR LYS CYS GLN ASN ILE SEQRES 6 B 397 THR ALA GLY THR ARG THR THR LEU TYR LEU LYS ARG GLU SEQRES 7 B 397 ASP LEU LEU HIS GLY GLY ALA HIS LYS THR ASN GLN VAL SEQRES 8 B 397 LEU GLY GLN ALA LEU LEU ALA LYS ARG MET GLY LYS SER SEQRES 9 B 397 GLU ILE ILE ALA GLU THR GLY ALA GLY ALA HIS GLY VAL SEQRES 10 B 397 ALA SER ALA LEU ALA SER ALA LEU LEU GLY LEU LYS CYS SEQRES 11 B 397 ARG ILE TYR MET GLY ALA LYS ASP VAL GLU ARG GLN SER SEQRES 12 B 397 PRO ASN VAL PHE ARG MET ARG LEU MET GLY ALA GLU VAL SEQRES 13 B 397 ILE PRO VAL HIS SER GLY SER ALA THR LEU LYS ASP ALA SEQRES 14 B 397 CYS ASN GLU ALA LEU ARG ASP TRP SER GLY SER TYR GLU SEQRES 15 B 397 THR ALA HIS TYR MET LEU GLY THR ALA ALA GLY PRO HIS SEQRES 16 B 397 PRO TYR PRO THR ILE VAL ARG GLU PHE GLN ARG MET ILE SEQRES 17 B 397 GLY GLU GLU THR LYS ALA GLN ILE LEU ASP LYS GLU GLY SEQRES 18 B 397 ARG LEU PRO ASP ALA VAL ILE ALA CYS VAL GLY GLY GLY SEQRES 19 B 397 SER ASN ALA ILE GLY MET PHE ALA ASP PHE ILE ASN ASP SEQRES 20 B 397 THR SER VAL GLY LEU ILE GLY VAL GLU PRO GLY GLY HIS SEQRES 21 B 397 GLY ILE GLU THR GLY GLU HIS GLY ALA PRO LEU LYS HIS SEQRES 22 B 397 GLY ARG VAL GLY ILE TYR PHE GLY MET LYS ALA PRO MET SEQRES 23 B 397 MET GLN THR ALA ASP GLY GLN ILE GLU GLU SER TYR SER SEQRES 24 B 397 ILE SER ALA GLY LEU ASP PHE PRO SER VAL GLY PRO GLN SEQRES 25 B 397 HIS ALA TYR LEU ASN SER ILE GLY ARG ALA ASP TYR VAL SEQRES 26 B 397 SER ILE THR ASP ASP GLU ALA LEU GLU ALA PHE LYS THR SEQRES 27 B 397 LEU CYS ARG HIS GLU GLY ILE ILE PRO ALA LEU GLU SER SEQRES 28 B 397 SER HIS ALA LEU ALA HIS ALA LEU LYS MET MET ARG GLU SEQRES 29 B 397 GLN PRO GLU LYS GLU GLN LEU LEU VAL VAL ASN LEU SER SEQRES 30 B 397 GLY ARG GLY ASP LYS ASP ILE PHE THR VAL HIS ASP ILE SEQRES 31 B 397 LEU LYS ALA ARG GLY GLU ILE HET EDO A 301 4 HET EDO A 302 4 HET SER A 303 7 HET DMS A 304 4 HET CL A 305 1 HET CL A 306 1 HET 1D0 B 401 29 HET SER B 402 7 HET EDO B 403 4 HET EDO B 404 4 HET DMS B 405 4 HET DMS B 406 4 HET DMS B 407 4 HET DMS B 408 4 HET DMS B 409 4 HET DMS B 410 4 HET DMS B 411 4 HET DMS B 412 4 HET DMS B 413 4 HET CS B 414 1 HET CS B 415 2 HET CS B 416 1 HET CL B 417 1 HET CL B 418 1 HET CL B 419 1 HET CL B 420 1 HET CL B 421 1 HET CL B 422 1 HET CL B 423 1 HET CL B 424 1 HET CL B 425 1 HET CL B 426 1 HET CL B 427 1 HET CL B 428 1 HET CL B 429 1 HET CL B 430 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM SER SERINE HETNAM DMS DIMETHYL SULFOXIDE HETNAM CL CHLORIDE ION HETNAM 1D0 (2E)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY) HETNAM 2 1D0 METHYL]PYRIDIN-4-YL}METHYL)IMINO]-3-[(2- HETNAM 3 1D0 HYDROXYPHENYL)AMINO]PROPANOIC ACID HETNAM CS CESIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 4(C2 H6 O2) FORMUL 5 SER 2(C3 H7 N O3) FORMUL 6 DMS 10(C2 H6 O S) FORMUL 7 CL 16(CL 1-) FORMUL 9 1D0 C17 H20 N3 O8 P FORMUL 22 CS 3(CS 1+) FORMUL 39 HOH *700(H2 O) HELIX 1 AA1 GLU A 2 ARG A 14 1 13 HELIX 2 AA2 GLY A 29 GLY A 44 1 16 HELIX 3 AA3 GLY A 61 ALA A 73 1 13 HELIX 4 AA4 THR A 77 HIS A 92 1 16 HELIX 5 AA5 TYR A 102 ASN A 108 1 7 HELIX 6 AA6 GLY A 110 GLY A 122 1 13 HELIX 7 AA7 PRO A 132 GLU A 135 5 4 HELIX 8 AA8 SER A 136 HIS A 146 1 11 HELIX 9 AA9 ASP A 159 GLY A 170 1 12 HELIX 10 AB1 HIS A 194 TYR A 203 1 10 HELIX 11 AB2 SER A 216 GLY A 227 1 12 HELIX 12 AB3 SER A 235 ASN A 244 1 10 HELIX 13 AB4 SER A 247 ALA A 265 1 19 HELIX 14 AB5 PRO B 18 ILE B 20 5 3 HELIX 15 AB6 LEU B 21 LYS B 37 1 17 HELIX 16 AB7 ASP B 38 TYR B 52 1 15 HELIX 17 AB8 GLN B 63 ALA B 67 5 5 HELIX 18 AB9 ASP B 79 LEU B 81 5 3 HELIX 19 AC1 LYS B 87 MET B 101 1 15 HELIX 20 AC2 GLY B 113 GLY B 127 1 15 HELIX 21 AC3 ALA B 136 GLN B 142 1 7 HELIX 22 AC4 GLN B 142 MET B 152 1 11 HELIX 23 AC5 THR B 165 TYR B 181 1 17 HELIX 24 AC6 PRO B 196 PHE B 204 1 9 HELIX 25 AC7 ARG B 206 GLY B 221 1 16 HELIX 26 AC8 GLY B 234 ALA B 242 1 9 HELIX 27 AC9 ASP B 243 ILE B 245 5 3 HELIX 28 AD1 GLY B 261 GLY B 265 5 5 HELIX 29 AD2 ALA B 269 GLY B 274 1 6 HELIX 30 AD3 SER B 301 ASP B 305 5 5 HELIX 31 AD4 GLY B 310 ILE B 319 1 10 HELIX 32 AD5 ASP B 329 GLY B 344 1 16 HELIX 33 AD6 ALA B 348 GLN B 365 1 18 HELIX 34 AD7 GLY B 380 LYS B 382 5 3 HELIX 35 AD8 ASP B 383 GLY B 395 1 13 SHEET 1 AA1 9 ALA A 149 ILE A 151 0 SHEET 2 AA1 9 SER A 125 VAL A 128 1 N VAL A 126 O ALA A 149 SHEET 3 AA1 9 ILE A 97 MET A 101 1 N MET A 101 O LEU A 127 SHEET 4 AA1 9 LEU A 48 GLY A 51 1 N LEU A 50 O GLY A 98 SHEET 5 AA1 9 ALA A 18 THR A 24 1 N VAL A 23 O GLY A 51 SHEET 6 AA1 9 GLY A 230 SER A 233 1 O ALA A 231 N ALA A 18 SHEET 7 AA1 9 ALA A 208 GLN A 210 1 N GLN A 210 O ILE A 232 SHEET 8 AA1 9 THR A 174 LEU A 176 1 N LEU A 176 O LEU A 209 SHEET 9 AA1 9 ILE A 153 CYS A 154 1 N CYS A 154 O TYR A 175 SHEET 1 AA2 4 TYR B 8 PHE B 9 0 SHEET 2 AA2 4 PHE B 12 TYR B 16 -1 O PHE B 12 N PHE B 9 SHEET 3 AA2 4 GLY B 281 MET B 286 -1 O LYS B 283 N GLY B 13 SHEET 4 AA2 4 ARG B 275 TYR B 279 -1 N GLY B 277 O ALA B 284 SHEET 1 AA3 6 LEU B 59 LYS B 61 0 SHEET 2 AA3 6 THR B 71 ARG B 77 -1 O LEU B 75 N THR B 60 SHEET 3 AA3 6 GLN B 370 LEU B 376 1 O LEU B 372 N THR B 72 SHEET 4 AA3 6 ALA B 226 CYS B 230 1 N ILE B 228 O VAL B 373 SHEET 5 AA3 6 GLY B 251 GLY B 259 1 O ILE B 253 N VAL B 227 SHEET 6 AA3 6 ASP B 323 THR B 328 1 O ILE B 327 N GLY B 258 SHEET 1 AA4 4 GLU B 155 VAL B 159 0 SHEET 2 AA4 4 LYS B 129 GLY B 135 1 N ILE B 132 O ILE B 157 SHEET 3 AA4 4 GLU B 105 GLU B 109 1 N ILE B 106 O LYS B 129 SHEET 4 AA4 4 ALA B 184 TYR B 186 1 O HIS B 185 N GLU B 105 LINK O GLY B 54 CS CS B 416 1555 1555 3.16 LINK O GLY B 54 CS CS B 416 1555 2556 3.16 LINK O PRO B 56 CS CS B 416 1555 1555 3.08 LINK O PRO B 56 CS CS B 416 1555 2556 3.08 LINK O THR B 66 CS CS B 414 1555 1555 3.17 LINK OG1 THR B 66 CS CS B 414 1555 1555 3.36 LINK O THR B 69 CS CS B 414 1555 1555 3.06 LINK O THR B 71 CS CS B 414 1555 1555 3.02 LINK O VAL B 231 CS B CS B 415 1555 1555 3.45 LINK O GLY B 232 CS A CS B 415 1555 1555 2.86 LINK OE2 GLU B 256 CS B CS B 415 1555 1555 2.94 LINK O GLY B 268 CS A CS B 415 1555 1555 3.00 LINK O LEU B 304 CS A CS B 415 1555 1555 3.32 LINK O PHE B 306 CS A CS B 415 1555 1555 2.91 LINK O DMS B 409 CS CS B 416 1555 1555 3.19 LINK O DMS B 409 CS CS B 416 1555 2556 3.19 LINK CS CS B 414 O HOH B 596 1555 1555 3.20 LINK CS CS B 414 O HOH B 850 1555 1555 3.41 CISPEP 1 ASP A 27 PRO A 28 0 -0.68 CISPEP 2 ARG B 55 PRO B 56 0 1.94 CISPEP 3 HIS B 195 PRO B 196 0 8.31 SITE 1 AC1 7 PHE A 107 ASN A 108 HOH A 421 HOH A 483 SITE 2 AC1 7 HOH A 536 ARG B 275 VAL B 276 SITE 1 AC2 6 PHE A 22 GLU A 49 ILE A 64 TYR A 175 SITE 2 AC2 6 GLY A 234 HOH A 546 SITE 1 AC3 6 PHE A 82 PHE A 114 ARG A 117 HOH A 406 SITE 2 AC3 6 HOH A 454 HOH A 455 SITE 1 AC4 5 ILE A 41 HIS A 92 PRO A 93 THR A 94 SITE 2 AC4 5 ILE A 95 SITE 1 AC5 3 ALA A 167 GLY A 170 HIS A 204 SITE 1 AC6 1 HOH A 546 SITE 1 AC7 21 ALA B 85 HIS B 86 LYS B 87 GLU B 109 SITE 2 AC7 21 THR B 110 GLY B 111 GLY B 113 ALA B 114 SITE 3 AC7 21 HIS B 115 THR B 190 CYS B 230 GLY B 232 SITE 4 AC7 21 GLY B 233 GLY B 234 SER B 235 ASN B 236 SITE 5 AC7 21 GLY B 303 GLU B 350 SER B 377 HOH B 601 SITE 6 AC7 21 HOH B 604 SITE 1 AC8 5 TYR B 8 PHE B 9 GLY B 10 TYR B 315 SITE 2 AC8 5 HOH B 621 SITE 1 AC9 3 THR B 289 ALA B 290 ASP B 291 SITE 1 AD1 3 LYS B 219 GLU B 220 CL B 430 SITE 1 AD2 2 ILE B 262 HIS B 267 SITE 1 AD3 2 GLU B 331 HOH B 780 SITE 1 AD4 5 SER B 143 PRO B 144 PHE B 147 PHE B 385 SITE 2 AD4 5 HIS B 388 SITE 1 AD5 3 TYR B 8 GLY B 10 HOH B 774 SITE 1 AD6 7 LYS B 50 GLY B 54 ARG B 55 PRO B 56 SITE 2 AD6 7 THR B 57 GLN B 215 CS B 416 SITE 1 AD7 4 LEU B 271 ARG B 363 GLU B 364 HOH B 815 SITE 1 AD8 4 GLN B 42 ALA B 46 MET B 207 HOH B 854 SITE 1 AD9 3 THR B 3 LEU B 4 LEU B 5 SITE 1 AE1 4 GLU B 211 HOH B 681 HOH B 846 HOH B 894 SITE 1 AE2 3 THR B 66 THR B 69 THR B 71 SITE 1 AE3 7 VAL B 231 GLY B 232 GLU B 256 GLY B 268 SITE 2 AE3 7 LEU B 304 PHE B 306 SER B 308 SITE 1 AE4 3 GLY B 54 PRO B 56 DMS B 409 SITE 1 AE5 1 GLN B 36 SITE 1 AE6 2 ASP B 225 SER B 249 SITE 1 AE7 1 HOH B 776 SITE 1 AE8 3 HOH B 533 HOH B 720 HOH B 958 SITE 1 AE9 2 ARG B 321 HOH B 952 SITE 1 AF1 1 GLU B 155 SITE 1 AF2 2 GLN B 36 LYS B 37 SITE 1 AF3 4 GLU B 369 HOH B 515 HOH B 672 HOH B 779 SITE 1 AF4 2 THR B 248 HOH B 904 SITE 1 AF5 1 HOH B 516 SITE 1 AF6 2 LYS B 219 EDO B 404 CRYST1 183.079 59.340 67.440 90.00 94.85 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005462 0.000000 0.000463 0.00000 SCALE2 0.000000 0.016852 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014881 0.00000