data_6VFH # _entry.id 6VFH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6VFH pdb_00006vfh 10.2210/pdb6vfh/pdb WWPDB D_1000246113 ? ? EMDB EMD-21172 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-08-12 2 'Structure model' 1 1 2020-08-19 3 'Structure model' 1 2 2024-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 6 3 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.pdbx_database_id_DOI' 3 2 'Structure model' '_citation.pdbx_database_id_PubMed' 4 2 'Structure model' '_citation.title' 5 3 'Structure model' '_database_2.pdbx_DOI' 6 3 'Structure model' '_database_2.pdbx_database_accession' 7 3 'Structure model' '_pdbx_struct_oper_list.name' 8 3 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 9 3 'Structure model' '_pdbx_struct_oper_list.type' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6VFH _pdbx_database_status.recvd_initial_deposition_date 2020-01-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'De novo designed tetrahedral nanoparticle T33_dn10' _pdbx_database_related.db_id EMD-21172 _pdbx_database_related.content_type 'associated EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Antanasijevic, A.' 1 0000-0001-9452-8954 'Ward, A.B.' 2 0000-0001-7153-3769 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Elife _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2050-084X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 9 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.7554/eLife.57659 _citation.pdbx_database_id_PubMed 32748788 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ueda, G.' 1 0000-0002-9792-7149 primary 'Antanasijevic, A.' 2 0000-0001-9452-8954 primary 'Fallas, J.A.' 3 ? primary 'Sheffler, W.' 4 ? primary 'Copps, J.' 5 ? primary 'Ellis, D.' 6 ? primary 'Hutchinson, G.B.' 7 ? primary 'Moyer, A.' 8 ? primary 'Yasmeen, A.' 9 ? primary 'Tsybovsky, Y.' 10 ? primary 'Park, Y.J.' 11 ? primary 'Bick, M.J.' 12 0000-0002-9585-859X primary 'Sankaran, B.' 13 ? primary 'Gillespie, R.A.' 14 ? primary 'Brouwer, P.J.' 15 0000-0002-2902-7739 primary 'Zwart, P.H.' 16 ? primary 'Veesler, D.' 17 0000-0002-6019-8675 primary 'Kanekiyo, M.' 18 ? primary 'Graham, B.S.' 19 0000-0001-8112-0853 primary 'Sanders, R.W.' 20 ? primary 'Moore, J.P.' 21 ? primary 'Klasse, P.J.' 22 0000-0001-8222-278X primary 'Ward, A.B.' 23 0000-0001-7153-3769 primary 'King, N.P.' 24 ? primary 'Baker, D.' 25 0000-0001-7896-6217 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man T33_dn10A 14082.408 1 ? ? ? ? 2 polymer man T33_dn10B 31466.830 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MGEEAELAYLLGELAYKLGEYRIAIRAYRIALKRDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG NAYYKQGDYDEAIEYYEKALELDPENLEALQNLLNAMDKQG ; ;MGEEAELAYLLGELAYKLGEYRIAIRAYRIALKRDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG NAYYKQGDYDEAIEYYEKALELDPENLEALQNLLNAMDKQG ; A ? 2 'polypeptide(L)' no no ;MIEEVVAEMIDILAESSKKSIEELARAADNKTTEKAVAEAIEEIARLATAAIQLIEALAKNLASEEFMARAISAIAELAK KAIEAIYRLADNHTTDTFMARAIAAIANLAVTAILAIAALASNHTTEEFMARAISAIAELAKKAIEAIYRLADNHTTDKF MAAAIEAIALLATLAILAIALLASNHTTEKFMARAIMAIAILAAKAIEAIYRLADNHTSPTYIEKAIEAIEKIARKAIKA IEMLAKNITTEEYKEKAKKIIDIIRKLAKMAIKKLEDNRTLEHHHHHH ; ;MIEEVVAEMIDILAESSKKSIEELARAADNKTTEKAVAEAIEEIARLATAAIQLIEALAKNLASEEFMARAISAIAELAK KAIEAIYRLADNHTTDTFMARAIAAIANLAVTAILAIAALASNHTTEEFMARAISAIAELAKKAIEAIYRLADNHTTDKF MAAAIEAIALLATLAILAIALLASNHTTEKFMARAIMAIAILAAKAIEAIYRLADNHTSPTYIEKAIEAIEKIARKAIKA IEMLAKNITTEEYKEKAKKIIDIIRKLAKMAIKKLEDNRTLEHHHHHH ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 GLU n 1 4 GLU n 1 5 ALA n 1 6 GLU n 1 7 LEU n 1 8 ALA n 1 9 TYR n 1 10 LEU n 1 11 LEU n 1 12 GLY n 1 13 GLU n 1 14 LEU n 1 15 ALA n 1 16 TYR n 1 17 LYS n 1 18 LEU n 1 19 GLY n 1 20 GLU n 1 21 TYR n 1 22 ARG n 1 23 ILE n 1 24 ALA n 1 25 ILE n 1 26 ARG n 1 27 ALA n 1 28 TYR n 1 29 ARG n 1 30 ILE n 1 31 ALA n 1 32 LEU n 1 33 LYS n 1 34 ARG n 1 35 ASP n 1 36 PRO n 1 37 ASN n 1 38 ASN n 1 39 ALA n 1 40 GLU n 1 41 ALA n 1 42 TRP n 1 43 TYR n 1 44 ASN n 1 45 LEU n 1 46 GLY n 1 47 ASN n 1 48 ALA n 1 49 TYR n 1 50 TYR n 1 51 LYS n 1 52 GLN n 1 53 GLY n 1 54 ASP n 1 55 TYR n 1 56 ASP n 1 57 GLU n 1 58 ALA n 1 59 ILE n 1 60 GLU n 1 61 TYR n 1 62 TYR n 1 63 GLN n 1 64 LYS n 1 65 ALA n 1 66 LEU n 1 67 GLU n 1 68 LEU n 1 69 ASP n 1 70 PRO n 1 71 ASN n 1 72 ASN n 1 73 ALA n 1 74 GLU n 1 75 ALA n 1 76 TRP n 1 77 TYR n 1 78 ASN n 1 79 LEU n 1 80 GLY n 1 81 ASN n 1 82 ALA n 1 83 TYR n 1 84 TYR n 1 85 LYS n 1 86 GLN n 1 87 GLY n 1 88 ASP n 1 89 TYR n 1 90 ASP n 1 91 GLU n 1 92 ALA n 1 93 ILE n 1 94 GLU n 1 95 TYR n 1 96 TYR n 1 97 GLU n 1 98 LYS n 1 99 ALA n 1 100 LEU n 1 101 GLU n 1 102 LEU n 1 103 ASP n 1 104 PRO n 1 105 GLU n 1 106 ASN n 1 107 LEU n 1 108 GLU n 1 109 ALA n 1 110 LEU n 1 111 GLN n 1 112 ASN n 1 113 LEU n 1 114 LEU n 1 115 ASN n 1 116 ALA n 1 117 MET n 1 118 ASP n 1 119 LYS n 1 120 GLN n 1 121 GLY n 2 1 MET n 2 2 ILE n 2 3 GLU n 2 4 GLU n 2 5 VAL n 2 6 VAL n 2 7 ALA n 2 8 GLU n 2 9 MET n 2 10 ILE n 2 11 ASP n 2 12 ILE n 2 13 LEU n 2 14 ALA n 2 15 GLU n 2 16 SER n 2 17 SER n 2 18 LYS n 2 19 LYS n 2 20 SER n 2 21 ILE n 2 22 GLU n 2 23 GLU n 2 24 LEU n 2 25 ALA n 2 26 ARG n 2 27 ALA n 2 28 ALA n 2 29 ASP n 2 30 ASN n 2 31 LYS n 2 32 THR n 2 33 THR n 2 34 GLU n 2 35 LYS n 2 36 ALA n 2 37 VAL n 2 38 ALA n 2 39 GLU n 2 40 ALA n 2 41 ILE n 2 42 GLU n 2 43 GLU n 2 44 ILE n 2 45 ALA n 2 46 ARG n 2 47 LEU n 2 48 ALA n 2 49 THR n 2 50 ALA n 2 51 ALA n 2 52 ILE n 2 53 GLN n 2 54 LEU n 2 55 ILE n 2 56 GLU n 2 57 ALA n 2 58 LEU n 2 59 ALA n 2 60 LYS n 2 61 ASN n 2 62 LEU n 2 63 ALA n 2 64 SER n 2 65 GLU n 2 66 GLU n 2 67 PHE n 2 68 MET n 2 69 ALA n 2 70 ARG n 2 71 ALA n 2 72 ILE n 2 73 SER n 2 74 ALA n 2 75 ILE n 2 76 ALA n 2 77 GLU n 2 78 LEU n 2 79 ALA n 2 80 LYS n 2 81 LYS n 2 82 ALA n 2 83 ILE n 2 84 GLU n 2 85 ALA n 2 86 ILE n 2 87 TYR n 2 88 ARG n 2 89 LEU n 2 90 ALA n 2 91 ASP n 2 92 ASN n 2 93 HIS n 2 94 THR n 2 95 THR n 2 96 ASP n 2 97 THR n 2 98 PHE n 2 99 MET n 2 100 ALA n 2 101 ARG n 2 102 ALA n 2 103 ILE n 2 104 ALA n 2 105 ALA n 2 106 ILE n 2 107 ALA n 2 108 ASN n 2 109 LEU n 2 110 ALA n 2 111 VAL n 2 112 THR n 2 113 ALA n 2 114 ILE n 2 115 LEU n 2 116 ALA n 2 117 ILE n 2 118 ALA n 2 119 ALA n 2 120 LEU n 2 121 ALA n 2 122 SER n 2 123 ASN n 2 124 HIS n 2 125 THR n 2 126 THR n 2 127 GLU n 2 128 GLU n 2 129 PHE n 2 130 MET n 2 131 ALA n 2 132 ARG n 2 133 ALA n 2 134 ILE n 2 135 SER n 2 136 ALA n 2 137 ILE n 2 138 ALA n 2 139 GLU n 2 140 LEU n 2 141 ALA n 2 142 LYS n 2 143 LYS n 2 144 ALA n 2 145 ILE n 2 146 GLU n 2 147 ALA n 2 148 ILE n 2 149 TYR n 2 150 ARG n 2 151 LEU n 2 152 ALA n 2 153 ASP n 2 154 ASN n 2 155 HIS n 2 156 THR n 2 157 THR n 2 158 ASP n 2 159 LYS n 2 160 PHE n 2 161 MET n 2 162 ALA n 2 163 ALA n 2 164 ALA n 2 165 ILE n 2 166 GLU n 2 167 ALA n 2 168 ILE n 2 169 ALA n 2 170 LEU n 2 171 LEU n 2 172 ALA n 2 173 THR n 2 174 LEU n 2 175 ALA n 2 176 ILE n 2 177 LEU n 2 178 ALA n 2 179 ILE n 2 180 ALA n 2 181 LEU n 2 182 LEU n 2 183 ALA n 2 184 SER n 2 185 ASN n 2 186 HIS n 2 187 THR n 2 188 THR n 2 189 GLU n 2 190 LYS n 2 191 PHE n 2 192 MET n 2 193 ALA n 2 194 ARG n 2 195 ALA n 2 196 ILE n 2 197 MET n 2 198 ALA n 2 199 ILE n 2 200 ALA n 2 201 ILE n 2 202 LEU n 2 203 ALA n 2 204 ALA n 2 205 LYS n 2 206 ALA n 2 207 ILE n 2 208 GLU n 2 209 ALA n 2 210 ILE n 2 211 TYR n 2 212 ARG n 2 213 LEU n 2 214 ALA n 2 215 ASP n 2 216 ASN n 2 217 HIS n 2 218 THR n 2 219 SER n 2 220 PRO n 2 221 THR n 2 222 TYR n 2 223 ILE n 2 224 GLU n 2 225 LYS n 2 226 ALA n 2 227 ILE n 2 228 GLU n 2 229 ALA n 2 230 ILE n 2 231 GLU n 2 232 LYS n 2 233 ILE n 2 234 ALA n 2 235 ARG n 2 236 LYS n 2 237 ALA n 2 238 ILE n 2 239 LYS n 2 240 ALA n 2 241 ILE n 2 242 GLU n 2 243 MET n 2 244 LEU n 2 245 ALA n 2 246 LYS n 2 247 ASN n 2 248 ILE n 2 249 THR n 2 250 THR n 2 251 GLU n 2 252 GLU n 2 253 TYR n 2 254 LYS n 2 255 GLU n 2 256 LYS n 2 257 ALA n 2 258 LYS n 2 259 LYS n 2 260 ILE n 2 261 ILE n 2 262 ASP n 2 263 ILE n 2 264 ILE n 2 265 ARG n 2 266 LYS n 2 267 LEU n 2 268 ALA n 2 269 LYS n 2 270 MET n 2 271 ALA n 2 272 ILE n 2 273 LYS n 2 274 LYS n 2 275 LEU n 2 276 GLU n 2 277 ASP n 2 278 ASN n 2 279 ARG n 2 280 THR n 2 281 LEU n 2 282 GLU n 2 283 HIS n 2 284 HIS n 2 285 HIS n 2 286 HIS n 2 287 HIS n 2 288 HIS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 121 ? ? ? ? ? ? ? ? ? 'synthetic construct' 32630 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 288 ? ? ? ? ? ? ? ? ? 'synthetic construct' 32630 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -1 ? ? ? A . n A 1 2 GLY 2 0 ? ? ? A . n A 1 3 GLU 3 1 1 GLU GLU A . n A 1 4 GLU 4 2 2 GLU GLU A . n A 1 5 ALA 5 3 3 ALA ALA A . n A 1 6 GLU 6 4 4 GLU GLU A . n A 1 7 LEU 7 5 5 LEU LEU A . n A 1 8 ALA 8 6 6 ALA ALA A . n A 1 9 TYR 9 7 7 TYR TYR A . n A 1 10 LEU 10 8 8 LEU LEU A . n A 1 11 LEU 11 9 9 LEU LEU A . n A 1 12 GLY 12 10 10 GLY GLY A . n A 1 13 GLU 13 11 11 GLU GLU A . n A 1 14 LEU 14 12 12 LEU LEU A . n A 1 15 ALA 15 13 13 ALA ALA A . n A 1 16 TYR 16 14 14 TYR TYR A . n A 1 17 LYS 17 15 15 LYS LYS A . n A 1 18 LEU 18 16 16 LEU LEU A . n A 1 19 GLY 19 17 17 GLY GLY A . n A 1 20 GLU 20 18 18 GLU GLU A . n A 1 21 TYR 21 19 19 TYR TYR A . n A 1 22 ARG 22 20 20 ARG ARG A . n A 1 23 ILE 23 21 21 ILE ILE A . n A 1 24 ALA 24 22 22 ALA ALA A . n A 1 25 ILE 25 23 23 ILE ILE A . n A 1 26 ARG 26 24 24 ARG ARG A . n A 1 27 ALA 27 25 25 ALA ALA A . n A 1 28 TYR 28 26 26 TYR TYR A . n A 1 29 ARG 29 27 27 ARG ARG A . n A 1 30 ILE 30 28 28 ILE ILE A . n A 1 31 ALA 31 29 29 ALA ALA A . n A 1 32 LEU 32 30 30 LEU LEU A . n A 1 33 LYS 33 31 31 LYS LYS A . n A 1 34 ARG 34 32 32 ARG ARG A . n A 1 35 ASP 35 33 33 ASP ASP A . n A 1 36 PRO 36 34 34 PRO PRO A . n A 1 37 ASN 37 35 35 ASN ASN A . n A 1 38 ASN 38 36 36 ASN ASN A . n A 1 39 ALA 39 37 37 ALA ALA A . n A 1 40 GLU 40 38 38 GLU GLU A . n A 1 41 ALA 41 39 39 ALA ALA A . n A 1 42 TRP 42 40 40 TRP TRP A . n A 1 43 TYR 43 41 41 TYR TYR A . n A 1 44 ASN 44 42 42 ASN ASN A . n A 1 45 LEU 45 43 43 LEU LEU A . n A 1 46 GLY 46 44 44 GLY GLY A . n A 1 47 ASN 47 45 45 ASN ASN A . n A 1 48 ALA 48 46 46 ALA ALA A . n A 1 49 TYR 49 47 47 TYR TYR A . n A 1 50 TYR 50 48 48 TYR TYR A . n A 1 51 LYS 51 49 49 LYS LYS A . n A 1 52 GLN 52 50 50 GLN GLN A . n A 1 53 GLY 53 51 51 GLY GLY A . n A 1 54 ASP 54 52 52 ASP ASP A . n A 1 55 TYR 55 53 53 TYR TYR A . n A 1 56 ASP 56 54 54 ASP ASP A . n A 1 57 GLU 57 55 55 GLU GLU A . n A 1 58 ALA 58 56 56 ALA ALA A . n A 1 59 ILE 59 57 57 ILE ILE A . n A 1 60 GLU 60 58 58 GLU GLU A . n A 1 61 TYR 61 59 59 TYR TYR A . n A 1 62 TYR 62 60 60 TYR TYR A . n A 1 63 GLN 63 61 61 GLN GLN A . n A 1 64 LYS 64 62 62 LYS LYS A . n A 1 65 ALA 65 63 63 ALA ALA A . n A 1 66 LEU 66 64 64 LEU LEU A . n A 1 67 GLU 67 65 65 GLU GLU A . n A 1 68 LEU 68 66 66 LEU LEU A . n A 1 69 ASP 69 67 67 ASP ASP A . n A 1 70 PRO 70 68 68 PRO PRO A . n A 1 71 ASN 71 69 69 ASN ASN A . n A 1 72 ASN 72 70 70 ASN ASN A . n A 1 73 ALA 73 71 71 ALA ALA A . n A 1 74 GLU 74 72 72 GLU GLU A . n A 1 75 ALA 75 73 73 ALA ALA A . n A 1 76 TRP 76 74 74 TRP TRP A . n A 1 77 TYR 77 75 75 TYR TYR A . n A 1 78 ASN 78 76 76 ASN ASN A . n A 1 79 LEU 79 77 77 LEU LEU A . n A 1 80 GLY 80 78 78 GLY GLY A . n A 1 81 ASN 81 79 79 ASN ASN A . n A 1 82 ALA 82 80 80 ALA ALA A . n A 1 83 TYR 83 81 81 TYR TYR A . n A 1 84 TYR 84 82 82 TYR TYR A . n A 1 85 LYS 85 83 83 LYS LYS A . n A 1 86 GLN 86 84 84 GLN GLN A . n A 1 87 GLY 87 85 85 GLY GLY A . n A 1 88 ASP 88 86 86 ASP ASP A . n A 1 89 TYR 89 87 87 TYR TYR A . n A 1 90 ASP 90 88 88 ASP ASP A . n A 1 91 GLU 91 89 89 GLU GLU A . n A 1 92 ALA 92 90 90 ALA ALA A . n A 1 93 ILE 93 91 91 ILE ILE A . n A 1 94 GLU 94 92 92 GLU GLU A . n A 1 95 TYR 95 93 93 TYR TYR A . n A 1 96 TYR 96 94 94 TYR TYR A . n A 1 97 GLU 97 95 95 GLU GLU A . n A 1 98 LYS 98 96 96 LYS LYS A . n A 1 99 ALA 99 97 97 ALA ALA A . n A 1 100 LEU 100 98 98 LEU LEU A . n A 1 101 GLU 101 99 99 GLU GLU A . n A 1 102 LEU 102 100 100 LEU LEU A . n A 1 103 ASP 103 101 101 ASP ASP A . n A 1 104 PRO 104 102 102 PRO PRO A . n A 1 105 GLU 105 103 103 GLU GLU A . n A 1 106 ASN 106 104 104 ASN ASN A . n A 1 107 LEU 107 105 105 LEU LEU A . n A 1 108 GLU 108 106 106 GLU GLU A . n A 1 109 ALA 109 107 107 ALA ALA A . n A 1 110 LEU 110 108 108 LEU LEU A . n A 1 111 GLN 111 109 109 GLN GLN A . n A 1 112 ASN 112 110 110 ASN ASN A . n A 1 113 LEU 113 111 111 LEU LEU A . n A 1 114 LEU 114 112 112 LEU LEU A . n A 1 115 ASN 115 113 113 ASN ASN A . n A 1 116 ALA 116 114 114 ALA ALA A . n A 1 117 MET 117 115 115 MET MET A . n A 1 118 ASP 118 116 116 ASP ASP A . n A 1 119 LYS 119 117 117 LYS LYS A . n A 1 120 GLN 120 118 118 GLN GLN A . n A 1 121 GLY 121 119 119 GLY GLY A . n B 2 1 MET 1 0 ? ? ? B . n B 2 2 ILE 2 1 1 ILE ILE B . n B 2 3 GLU 3 2 2 GLU GLU B . n B 2 4 GLU 4 3 3 GLU GLU B . n B 2 5 VAL 5 4 4 VAL VAL B . n B 2 6 VAL 6 5 5 VAL VAL B . n B 2 7 ALA 7 6 6 ALA ALA B . n B 2 8 GLU 8 7 7 GLU GLU B . n B 2 9 MET 9 8 8 MET MET B . n B 2 10 ILE 10 9 9 ILE ILE B . n B 2 11 ASP 11 10 10 ASP ASP B . n B 2 12 ILE 12 11 11 ILE ILE B . n B 2 13 LEU 13 12 12 LEU LEU B . n B 2 14 ALA 14 13 13 ALA ALA B . n B 2 15 GLU 15 14 14 GLU GLU B . n B 2 16 SER 16 15 15 SER SER B . n B 2 17 SER 17 16 16 SER SER B . n B 2 18 LYS 18 17 17 LYS LYS B . n B 2 19 LYS 19 18 18 LYS LYS B . n B 2 20 SER 20 19 19 SER SER B . n B 2 21 ILE 21 20 20 ILE ILE B . n B 2 22 GLU 22 21 21 GLU GLU B . n B 2 23 GLU 23 22 22 GLU GLU B . n B 2 24 LEU 24 23 23 LEU LEU B . n B 2 25 ALA 25 24 24 ALA ALA B . n B 2 26 ARG 26 25 25 ARG ARG B . n B 2 27 ALA 27 26 26 ALA ALA B . n B 2 28 ALA 28 27 27 ALA ALA B . n B 2 29 ASP 29 28 28 ASP ASP B . n B 2 30 ASN 30 29 29 ASN ASN B . n B 2 31 LYS 31 30 30 LYS LYS B . n B 2 32 THR 32 31 31 THR THR B . n B 2 33 THR 33 32 32 THR THR B . n B 2 34 GLU 34 33 33 GLU GLU B . n B 2 35 LYS 35 34 34 LYS LYS B . n B 2 36 ALA 36 35 35 ALA ALA B . n B 2 37 VAL 37 36 36 VAL VAL B . n B 2 38 ALA 38 37 37 ALA ALA B . n B 2 39 GLU 39 38 38 GLU GLU B . n B 2 40 ALA 40 39 39 ALA ALA B . n B 2 41 ILE 41 40 40 ILE ILE B . n B 2 42 GLU 42 41 41 GLU GLU B . n B 2 43 GLU 43 42 42 GLU GLU B . n B 2 44 ILE 44 43 43 ILE ILE B . n B 2 45 ALA 45 44 44 ALA ALA B . n B 2 46 ARG 46 45 45 ARG ARG B . n B 2 47 LEU 47 46 46 LEU LEU B . n B 2 48 ALA 48 47 47 ALA ALA B . n B 2 49 THR 49 48 48 THR THR B . n B 2 50 ALA 50 49 49 ALA ALA B . n B 2 51 ALA 51 50 50 ALA ALA B . n B 2 52 ILE 52 51 51 ILE ILE B . n B 2 53 GLN 53 52 52 GLN GLN B . n B 2 54 LEU 54 53 53 LEU LEU B . n B 2 55 ILE 55 54 54 ILE ILE B . n B 2 56 GLU 56 55 55 GLU GLU B . n B 2 57 ALA 57 56 56 ALA ALA B . n B 2 58 LEU 58 57 57 LEU LEU B . n B 2 59 ALA 59 58 58 ALA ALA B . n B 2 60 LYS 60 59 59 LYS LYS B . n B 2 61 ASN 61 60 60 ASN ASN B . n B 2 62 LEU 62 61 61 LEU LEU B . n B 2 63 ALA 63 62 62 ALA ALA B . n B 2 64 SER 64 63 63 SER SER B . n B 2 65 GLU 65 64 64 GLU GLU B . n B 2 66 GLU 66 65 65 GLU GLU B . n B 2 67 PHE 67 66 66 PHE PHE B . n B 2 68 MET 68 67 67 MET MET B . n B 2 69 ALA 69 68 68 ALA ALA B . n B 2 70 ARG 70 69 69 ARG ARG B . n B 2 71 ALA 71 70 70 ALA ALA B . n B 2 72 ILE 72 71 71 ILE ILE B . n B 2 73 SER 73 72 72 SER SER B . n B 2 74 ALA 74 73 73 ALA ALA B . n B 2 75 ILE 75 74 74 ILE ILE B . n B 2 76 ALA 76 75 75 ALA ALA B . n B 2 77 GLU 77 76 76 GLU GLU B . n B 2 78 LEU 78 77 77 LEU LEU B . n B 2 79 ALA 79 78 78 ALA ALA B . n B 2 80 LYS 80 79 79 LYS LYS B . n B 2 81 LYS 81 80 80 LYS LYS B . n B 2 82 ALA 82 81 81 ALA ALA B . n B 2 83 ILE 83 82 82 ILE ILE B . n B 2 84 GLU 84 83 83 GLU GLU B . n B 2 85 ALA 85 84 84 ALA ALA B . n B 2 86 ILE 86 85 85 ILE ILE B . n B 2 87 TYR 87 86 86 TYR TYR B . n B 2 88 ARG 88 87 87 ARG ARG B . n B 2 89 LEU 89 88 88 LEU LEU B . n B 2 90 ALA 90 89 89 ALA ALA B . n B 2 91 ASP 91 90 90 ASP ASP B . n B 2 92 ASN 92 91 91 ASN ASN B . n B 2 93 HIS 93 92 92 HIS HIS B . n B 2 94 THR 94 93 93 THR THR B . n B 2 95 THR 95 94 94 THR THR B . n B 2 96 ASP 96 95 95 ASP ASP B . n B 2 97 THR 97 96 96 THR THR B . n B 2 98 PHE 98 97 97 PHE PHE B . n B 2 99 MET 99 98 98 MET MET B . n B 2 100 ALA 100 99 99 ALA ALA B . n B 2 101 ARG 101 100 100 ARG ARG B . n B 2 102 ALA 102 101 101 ALA ALA B . n B 2 103 ILE 103 102 102 ILE ILE B . n B 2 104 ALA 104 103 103 ALA ALA B . n B 2 105 ALA 105 104 104 ALA ALA B . n B 2 106 ILE 106 105 105 ILE ILE B . n B 2 107 ALA 107 106 106 ALA ALA B . n B 2 108 ASN 108 107 107 ASN ASN B . n B 2 109 LEU 109 108 108 LEU LEU B . n B 2 110 ALA 110 109 109 ALA ALA B . n B 2 111 VAL 111 110 110 VAL VAL B . n B 2 112 THR 112 111 111 THR THR B . n B 2 113 ALA 113 112 112 ALA ALA B . n B 2 114 ILE 114 113 113 ILE ILE B . n B 2 115 LEU 115 114 114 LEU LEU B . n B 2 116 ALA 116 115 115 ALA ALA B . n B 2 117 ILE 117 116 116 ILE ILE B . n B 2 118 ALA 118 117 117 ALA ALA B . n B 2 119 ALA 119 118 118 ALA ALA B . n B 2 120 LEU 120 119 119 LEU LEU B . n B 2 121 ALA 121 120 120 ALA ALA B . n B 2 122 SER 122 121 121 SER SER B . n B 2 123 ASN 123 122 122 ASN ASN B . n B 2 124 HIS 124 123 123 HIS HIS B . n B 2 125 THR 125 124 124 THR THR B . n B 2 126 THR 126 125 125 THR THR B . n B 2 127 GLU 127 126 126 GLU GLU B . n B 2 128 GLU 128 127 127 GLU GLU B . n B 2 129 PHE 129 128 128 PHE PHE B . n B 2 130 MET 130 129 129 MET MET B . n B 2 131 ALA 131 130 130 ALA ALA B . n B 2 132 ARG 132 131 131 ARG ARG B . n B 2 133 ALA 133 132 132 ALA ALA B . n B 2 134 ILE 134 133 133 ILE ILE B . n B 2 135 SER 135 134 134 SER SER B . n B 2 136 ALA 136 135 135 ALA ALA B . n B 2 137 ILE 137 136 136 ILE ILE B . n B 2 138 ALA 138 137 137 ALA ALA B . n B 2 139 GLU 139 138 138 GLU GLU B . n B 2 140 LEU 140 139 139 LEU LEU B . n B 2 141 ALA 141 140 140 ALA ALA B . n B 2 142 LYS 142 141 141 LYS LYS B . n B 2 143 LYS 143 142 142 LYS LYS B . n B 2 144 ALA 144 143 143 ALA ALA B . n B 2 145 ILE 145 144 144 ILE ILE B . n B 2 146 GLU 146 145 145 GLU GLU B . n B 2 147 ALA 147 146 146 ALA ALA B . n B 2 148 ILE 148 147 147 ILE ILE B . n B 2 149 TYR 149 148 148 TYR TYR B . n B 2 150 ARG 150 149 149 ARG ARG B . n B 2 151 LEU 151 150 150 LEU LEU B . n B 2 152 ALA 152 151 151 ALA ALA B . n B 2 153 ASP 153 152 152 ASP ASP B . n B 2 154 ASN 154 153 153 ASN ASN B . n B 2 155 HIS 155 154 154 HIS HIS B . n B 2 156 THR 156 155 155 THR THR B . n B 2 157 THR 157 156 156 THR THR B . n B 2 158 ASP 158 157 157 ASP ASP B . n B 2 159 LYS 159 158 158 LYS LYS B . n B 2 160 PHE 160 159 159 PHE PHE B . n B 2 161 MET 161 160 160 MET MET B . n B 2 162 ALA 162 161 161 ALA ALA B . n B 2 163 ALA 163 162 162 ALA ALA B . n B 2 164 ALA 164 163 163 ALA ALA B . n B 2 165 ILE 165 164 164 ILE ILE B . n B 2 166 GLU 166 165 165 GLU GLU B . n B 2 167 ALA 167 166 166 ALA ALA B . n B 2 168 ILE 168 167 167 ILE ILE B . n B 2 169 ALA 169 168 168 ALA ALA B . n B 2 170 LEU 170 169 169 LEU LEU B . n B 2 171 LEU 171 170 170 LEU LEU B . n B 2 172 ALA 172 171 171 ALA ALA B . n B 2 173 THR 173 172 172 THR THR B . n B 2 174 LEU 174 173 173 LEU LEU B . n B 2 175 ALA 175 174 174 ALA ALA B . n B 2 176 ILE 176 175 175 ILE ILE B . n B 2 177 LEU 177 176 176 LEU LEU B . n B 2 178 ALA 178 177 177 ALA ALA B . n B 2 179 ILE 179 178 178 ILE ILE B . n B 2 180 ALA 180 179 179 ALA ALA B . n B 2 181 LEU 181 180 180 LEU LEU B . n B 2 182 LEU 182 181 181 LEU LEU B . n B 2 183 ALA 183 182 182 ALA ALA B . n B 2 184 SER 184 183 183 SER SER B . n B 2 185 ASN 185 184 184 ASN ASN B . n B 2 186 HIS 186 185 185 HIS HIS B . n B 2 187 THR 187 186 186 THR THR B . n B 2 188 THR 188 187 187 THR THR B . n B 2 189 GLU 189 188 188 GLU GLU B . n B 2 190 LYS 190 189 189 LYS LYS B . n B 2 191 PHE 191 190 190 PHE PHE B . n B 2 192 MET 192 191 191 MET MET B . n B 2 193 ALA 193 192 192 ALA ALA B . n B 2 194 ARG 194 193 193 ARG ARG B . n B 2 195 ALA 195 194 194 ALA ALA B . n B 2 196 ILE 196 195 195 ILE ILE B . n B 2 197 MET 197 196 196 MET MET B . n B 2 198 ALA 198 197 197 ALA ALA B . n B 2 199 ILE 199 198 198 ILE ILE B . n B 2 200 ALA 200 199 199 ALA ALA B . n B 2 201 ILE 201 200 200 ILE ILE B . n B 2 202 LEU 202 201 201 LEU LEU B . n B 2 203 ALA 203 202 202 ALA ALA B . n B 2 204 ALA 204 203 203 ALA ALA B . n B 2 205 LYS 205 204 204 LYS LYS B . n B 2 206 ALA 206 205 205 ALA ALA B . n B 2 207 ILE 207 206 206 ILE ILE B . n B 2 208 GLU 208 207 207 GLU GLU B . n B 2 209 ALA 209 208 208 ALA ALA B . n B 2 210 ILE 210 209 209 ILE ILE B . n B 2 211 TYR 211 210 210 TYR TYR B . n B 2 212 ARG 212 211 211 ARG ARG B . n B 2 213 LEU 213 212 212 LEU LEU B . n B 2 214 ALA 214 213 213 ALA ALA B . n B 2 215 ASP 215 214 214 ASP ASP B . n B 2 216 ASN 216 215 215 ASN ASN B . n B 2 217 HIS 217 216 216 HIS HIS B . n B 2 218 THR 218 217 217 THR THR B . n B 2 219 SER 219 218 218 SER SER B . n B 2 220 PRO 220 219 219 PRO PRO B . n B 2 221 THR 221 220 220 THR THR B . n B 2 222 TYR 222 221 221 TYR TYR B . n B 2 223 ILE 223 222 222 ILE ILE B . n B 2 224 GLU 224 223 223 GLU GLU B . n B 2 225 LYS 225 224 224 LYS LYS B . n B 2 226 ALA 226 225 225 ALA ALA B . n B 2 227 ILE 227 226 226 ILE ILE B . n B 2 228 GLU 228 227 227 GLU GLU B . n B 2 229 ALA 229 228 228 ALA ALA B . n B 2 230 ILE 230 229 229 ILE ILE B . n B 2 231 GLU 231 230 230 GLU GLU B . n B 2 232 LYS 232 231 231 LYS LYS B . n B 2 233 ILE 233 232 232 ILE ILE B . n B 2 234 ALA 234 233 233 ALA ALA B . n B 2 235 ARG 235 234 234 ARG ARG B . n B 2 236 LYS 236 235 235 LYS LYS B . n B 2 237 ALA 237 236 236 ALA ALA B . n B 2 238 ILE 238 237 237 ILE ILE B . n B 2 239 LYS 239 238 238 LYS LYS B . n B 2 240 ALA 240 239 239 ALA ALA B . n B 2 241 ILE 241 240 240 ILE ILE B . n B 2 242 GLU 242 241 241 GLU GLU B . n B 2 243 MET 243 242 242 MET MET B . n B 2 244 LEU 244 243 243 LEU LEU B . n B 2 245 ALA 245 244 244 ALA ALA B . n B 2 246 LYS 246 245 245 LYS LYS B . n B 2 247 ASN 247 246 246 ASN ASN B . n B 2 248 ILE 248 247 247 ILE ILE B . n B 2 249 THR 249 248 248 THR THR B . n B 2 250 THR 250 249 249 THR THR B . n B 2 251 GLU 251 250 250 GLU GLU B . n B 2 252 GLU 252 251 251 GLU GLU B . n B 2 253 TYR 253 252 252 TYR TYR B . n B 2 254 LYS 254 253 253 LYS LYS B . n B 2 255 GLU 255 254 254 GLU GLU B . n B 2 256 LYS 256 255 255 LYS LYS B . n B 2 257 ALA 257 256 256 ALA ALA B . n B 2 258 LYS 258 257 257 LYS LYS B . n B 2 259 LYS 259 258 258 LYS LYS B . n B 2 260 ILE 260 259 259 ILE ILE B . n B 2 261 ILE 261 260 260 ILE ILE B . n B 2 262 ASP 262 261 261 ASP ASP B . n B 2 263 ILE 263 262 262 ILE ILE B . n B 2 264 ILE 264 263 263 ILE ILE B . n B 2 265 ARG 265 264 264 ARG ARG B . n B 2 266 LYS 266 265 265 LYS LYS B . n B 2 267 LEU 267 266 266 LEU LEU B . n B 2 268 ALA 268 267 267 ALA ALA B . n B 2 269 LYS 269 268 268 LYS LYS B . n B 2 270 MET 270 269 269 MET MET B . n B 2 271 ALA 271 270 270 ALA ALA B . n B 2 272 ILE 272 271 271 ILE ILE B . n B 2 273 LYS 273 272 272 LYS LYS B . n B 2 274 LYS 274 273 273 LYS LYS B . n B 2 275 LEU 275 274 274 LEU LEU B . n B 2 276 GLU 276 275 275 GLU GLU B . n B 2 277 ASP 277 276 276 ASP ASP B . n B 2 278 ASN 278 277 277 ASN ASN B . n B 2 279 ARG 279 278 ? ? ? B . n B 2 280 THR 280 279 ? ? ? B . n B 2 281 LEU 281 280 ? ? ? B . n B 2 282 GLU 282 281 ? ? ? B . n B 2 283 HIS 283 282 ? ? ? B . n B 2 284 HIS 284 283 ? ? ? B . n B 2 285 HIS 285 284 ? ? ? B . n B 2 286 HIS 286 285 ? ? ? B . n B 2 287 HIS 287 286 ? ? ? B . n B 2 288 HIS 288 287 ? ? ? B . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6VFH _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 6VFH _struct.title 'De novo designed tetrahedral nanoparticle T33_dn10' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6VFH _struct_keywords.text 'De novo, Nanoparticle, DE NOVO PROTEIN' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 6VFH 6VFH ? 1 ? 1 2 PDB 6VFH 6VFH ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6VFH A 1 ? 121 ? 6VFH -1 ? 119 ? -1 119 2 2 6VFH B 1 ? 288 ? 6VFH 0 ? 287 ? 0 287 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete point assembly' ? 24-meric 24 2 'point asymmetric unit' ? dimeric 2 3 'point asymmetric unit, std point frame' ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-12)' A,B 2 1 A,B 3 P A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support SAXS _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? -0.70710680 -0.40824822 -0.57735030 260.92833 -0.70710676 0.40824824 0.57735033 -42.43235 0.00000000 0.81649664 -0.57735018 -37.54275 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 308.99999 0.00000000 0.33333354 -0.94280897 247.69291 0.00000000 -0.94280897 -0.33333354 350.29076 3 'point symmetry operation' ? ? -0.00000005 -0.57735018 -0.81649665 369.00839 -0.57735018 -0.66666675 0.47140451 274.35411 -0.81649664 0.47140451 -0.33333320 257.94347 4 'point symmetry operation' ? ? 0.00000005 0.57735019 0.81649665 -60.00840 0.57735018 -0.66666679 0.47140446 95.95292 0.81649664 0.47140446 -0.33333327 5.64604 5 'point symmetry operation' ? ? 0.50000000 -0.28867525 0.81649654 -3.45746 -0.86602540 -0.16666659 0.47140455 241.70441 -0.00000012 -0.94280902 -0.33333341 350.29077 6 'point symmetry operation' ? ? -0.50000000 -0.86602540 -0.00000006 365.55092 0.86602540 -0.50000000 -0.00000018 97.94909 0.00000012 -0.00000014 1.00000000 0.00000 7 'point symmetry operation' ? ? -0.50000000 0.28867525 -0.81649654 312.45745 -0.28867519 0.83333323 0.47140467 -1.99618 0.81649656 0.47140462 -0.33333323 5.64602 8 'point symmetry operation' ? ? 0.50000000 0.86602540 0.00000006 -56.55093 0.28867519 -0.16666664 -0.94280903 280.34263 -0.81649656 0.47140453 -0.33333336 257.94348 9 'point symmetry operation' ? ? 0.50000000 -0.86602540 -0.00000013 211.05093 -0.28867526 -0.16666660 -0.94280902 369.54326 0.81649654 0.47140455 -0.33333340 5.64606 10 'point symmetry operation' ? ? -0.50000000 -0.28867519 0.81649656 151.04252 0.28867526 0.83333323 0.47140463 -91.19681 -0.81649654 0.47140466 -0.33333323 257.94344 11 'point symmetry operation' ? ? 0.50000000 0.28867519 -0.81649656 157.95747 0.86602540 -0.16666663 0.47140454 -25.89743 0.00000006 -0.94280903 -0.33333337 350.29073 12 'point symmetry operation' ? ? -0.50000000 0.86602540 0.00000013 97.94906 -0.86602540 -0.50000000 -0.00000015 365.55092 -0.00000006 -0.00000018 1.00000000 0.00004 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLU A 3 ? LEU A 18 ? GLU A 1 LEU A 16 1 ? 16 HELX_P HELX_P2 AA2 GLU A 20 ? ASP A 35 ? GLU A 18 ASP A 33 1 ? 16 HELX_P HELX_P3 AA3 ASN A 38 ? GLN A 52 ? ASN A 36 GLN A 50 1 ? 15 HELX_P HELX_P4 AA4 ASP A 54 ? ASP A 69 ? ASP A 52 ASP A 67 1 ? 16 HELX_P HELX_P5 AA5 ASN A 72 ? GLN A 86 ? ASN A 70 GLN A 84 1 ? 15 HELX_P HELX_P6 AA6 ASP A 88 ? ASP A 103 ? ASP A 86 ASP A 101 1 ? 16 HELX_P HELX_P7 AA7 ASN A 106 ? GLN A 120 ? ASN A 104 GLN A 118 1 ? 15 HELX_P HELX_P8 AA8 GLU B 3 ? ASN B 30 ? GLU B 2 ASN B 29 1 ? 28 HELX_P HELX_P9 AA9 THR B 33 ? LYS B 60 ? THR B 32 LYS B 59 1 ? 28 HELX_P HELX_P10 AB1 SER B 64 ? ALA B 90 ? SER B 63 ALA B 89 1 ? 27 HELX_P HELX_P11 AB2 ASN B 92 ? ASP B 96 ? ASN B 91 ASP B 95 5 ? 5 HELX_P HELX_P12 AB3 PHE B 98 ? SER B 122 ? PHE B 97 SER B 121 1 ? 25 HELX_P HELX_P13 AB4 THR B 126 ? ASP B 153 ? THR B 125 ASP B 152 1 ? 28 HELX_P HELX_P14 AB5 PHE B 160 ? SER B 184 ? PHE B 159 SER B 183 1 ? 25 HELX_P HELX_P15 AB6 THR B 188 ? ASP B 215 ? THR B 187 ASP B 214 1 ? 28 HELX_P HELX_P16 AB7 SER B 219 ? LYS B 246 ? SER B 218 LYS B 245 1 ? 28 HELX_P HELX_P17 AB8 GLU B 251 ? ASN B 278 ? GLU B 250 ASN B 277 1 ? 28 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE B ARG 45 ? ? CZ B ARG 45 ? ? NH2 B ARG 45 ? ? 117.03 120.30 -3.27 0.50 N 2 1 NE B ARG 211 ? ? CZ B ARG 211 ? ? NH2 B ARG 211 ? ? 116.63 120.30 -3.67 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN B 91 ? ? 58.04 -119.45 2 1 THR B 93 ? ? 59.96 1.88 3 1 SER B 218 ? ? -162.38 67.96 4 1 GLU B 250 ? ? 68.24 -55.02 # _pdbx_point_symmetry.entry_id 6VFH _pdbx_point_symmetry.Schoenflies_symbol T # _em_3d_fitting.entry_id 6VFH _em_3d_fitting.id 1 _em_3d_fitting.details ;Tetrahedral nanoparticle T33_dn10 model was docked into the reconstructed map using UCSF Chimera. The model was then relaxed using a combination of Rosetta relaxed refinement and manual refinement in Coot. ; _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol OTHER _em_3d_fitting.ref_space REAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 6VFH _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm 'BACK PROJECTION' _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.num_particles 49961 _em_3d_reconstruction.resolution 3.86 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details 'TBS buffer, 0.2um filtered, 0.06mM DDM detergent added immediately before freezing' _em_buffer.pH 7.4 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details 'Self-assembling nanoparticle with tetrahedral symmetry' _em_entity_assembly.name 'De novo designed tetrahedral nanoparticle T33_dn10' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list '1, 2' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 6VFH _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max 1500 _em_imaging.nominal_defocus_min 600 _em_imaging.nominal_magnification 29000 _em_imaging.recording_temperature_maximum 90 _em_imaging.recording_temperature_minimum 70 _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 400 _em_sample_support.grid_type 'Quantifoil R2/1' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 283 _em_vitrification.cryogen_name ETHANE _em_vitrification.details '0.06mM DDM detergent (from an 8X stock) added immediately before freezing' _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 6VFH _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6VFH _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 6VFH _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry T # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -1 ? A MET 1 2 1 Y 1 A GLY 0 ? A GLY 2 3 1 Y 1 B MET 0 ? B MET 1 4 1 Y 1 B ARG 278 ? B ARG 279 5 1 Y 1 B THR 279 ? B THR 280 6 1 Y 1 B LEU 280 ? B LEU 281 7 1 Y 1 B GLU 281 ? B GLU 282 8 1 Y 1 B HIS 282 ? B HIS 283 9 1 Y 1 B HIS 283 ? B HIS 284 10 1 Y 1 B HIS 284 ? B HIS 285 11 1 Y 1 B HIS 285 ? B HIS 286 12 1 Y 1 B HIS 286 ? B HIS 287 13 1 Y 1 B HIS 287 ? B HIS 288 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 ILE N N N N 144 ILE CA C N S 145 ILE C C N N 146 ILE O O N N 147 ILE CB C N S 148 ILE CG1 C N N 149 ILE CG2 C N N 150 ILE CD1 C N N 151 ILE OXT O N N 152 ILE H H N N 153 ILE H2 H N N 154 ILE HA H N N 155 ILE HB H N N 156 ILE HG12 H N N 157 ILE HG13 H N N 158 ILE HG21 H N N 159 ILE HG22 H N N 160 ILE HG23 H N N 161 ILE HD11 H N N 162 ILE HD12 H N N 163 ILE HD13 H N N 164 ILE HXT H N N 165 LEU N N N N 166 LEU CA C N S 167 LEU C C N N 168 LEU O O N N 169 LEU CB C N N 170 LEU CG C N N 171 LEU CD1 C N N 172 LEU CD2 C N N 173 LEU OXT O N N 174 LEU H H N N 175 LEU H2 H N N 176 LEU HA H N N 177 LEU HB2 H N N 178 LEU HB3 H N N 179 LEU HG H N N 180 LEU HD11 H N N 181 LEU HD12 H N N 182 LEU HD13 H N N 183 LEU HD21 H N N 184 LEU HD22 H N N 185 LEU HD23 H N N 186 LEU HXT H N N 187 LYS N N N N 188 LYS CA C N S 189 LYS C C N N 190 LYS O O N N 191 LYS CB C N N 192 LYS CG C N N 193 LYS CD C N N 194 LYS CE C N N 195 LYS NZ N N N 196 LYS OXT O N N 197 LYS H H N N 198 LYS H2 H N N 199 LYS HA H N N 200 LYS HB2 H N N 201 LYS HB3 H N N 202 LYS HG2 H N N 203 LYS HG3 H N N 204 LYS HD2 H N N 205 LYS HD3 H N N 206 LYS HE2 H N N 207 LYS HE3 H N N 208 LYS HZ1 H N N 209 LYS HZ2 H N N 210 LYS HZ3 H N N 211 LYS HXT H N N 212 MET N N N N 213 MET CA C N S 214 MET C C N N 215 MET O O N N 216 MET CB C N N 217 MET CG C N N 218 MET SD S N N 219 MET CE C N N 220 MET OXT O N N 221 MET H H N N 222 MET H2 H N N 223 MET HA H N N 224 MET HB2 H N N 225 MET HB3 H N N 226 MET HG2 H N N 227 MET HG3 H N N 228 MET HE1 H N N 229 MET HE2 H N N 230 MET HE3 H N N 231 MET HXT H N N 232 PHE N N N N 233 PHE CA C N S 234 PHE C C N N 235 PHE O O N N 236 PHE CB C N N 237 PHE CG C Y N 238 PHE CD1 C Y N 239 PHE CD2 C Y N 240 PHE CE1 C Y N 241 PHE CE2 C Y N 242 PHE CZ C Y N 243 PHE OXT O N N 244 PHE H H N N 245 PHE H2 H N N 246 PHE HA H N N 247 PHE HB2 H N N 248 PHE HB3 H N N 249 PHE HD1 H N N 250 PHE HD2 H N N 251 PHE HE1 H N N 252 PHE HE2 H N N 253 PHE HZ H N N 254 PHE HXT H N N 255 PRO N N N N 256 PRO CA C N S 257 PRO C C N N 258 PRO O O N N 259 PRO CB C N N 260 PRO CG C N N 261 PRO CD C N N 262 PRO OXT O N N 263 PRO H H N N 264 PRO HA H N N 265 PRO HB2 H N N 266 PRO HB3 H N N 267 PRO HG2 H N N 268 PRO HG3 H N N 269 PRO HD2 H N N 270 PRO HD3 H N N 271 PRO HXT H N N 272 SER N N N N 273 SER CA C N S 274 SER C C N N 275 SER O O N N 276 SER CB C N N 277 SER OG O N N 278 SER OXT O N N 279 SER H H N N 280 SER H2 H N N 281 SER HA H N N 282 SER HB2 H N N 283 SER HB3 H N N 284 SER HG H N N 285 SER HXT H N N 286 THR N N N N 287 THR CA C N S 288 THR C C N N 289 THR O O N N 290 THR CB C N R 291 THR OG1 O N N 292 THR CG2 C N N 293 THR OXT O N N 294 THR H H N N 295 THR H2 H N N 296 THR HA H N N 297 THR HB H N N 298 THR HG1 H N N 299 THR HG21 H N N 300 THR HG22 H N N 301 THR HG23 H N N 302 THR HXT H N N 303 TRP N N N N 304 TRP CA C N S 305 TRP C C N N 306 TRP O O N N 307 TRP CB C N N 308 TRP CG C Y N 309 TRP CD1 C Y N 310 TRP CD2 C Y N 311 TRP NE1 N Y N 312 TRP CE2 C Y N 313 TRP CE3 C Y N 314 TRP CZ2 C Y N 315 TRP CZ3 C Y N 316 TRP CH2 C Y N 317 TRP OXT O N N 318 TRP H H N N 319 TRP H2 H N N 320 TRP HA H N N 321 TRP HB2 H N N 322 TRP HB3 H N N 323 TRP HD1 H N N 324 TRP HE1 H N N 325 TRP HE3 H N N 326 TRP HZ2 H N N 327 TRP HZ3 H N N 328 TRP HH2 H N N 329 TRP HXT H N N 330 TYR N N N N 331 TYR CA C N S 332 TYR C C N N 333 TYR O O N N 334 TYR CB C N N 335 TYR CG C Y N 336 TYR CD1 C Y N 337 TYR CD2 C Y N 338 TYR CE1 C Y N 339 TYR CE2 C Y N 340 TYR CZ C Y N 341 TYR OH O N N 342 TYR OXT O N N 343 TYR H H N N 344 TYR H2 H N N 345 TYR HA H N N 346 TYR HB2 H N N 347 TYR HB3 H N N 348 TYR HD1 H N N 349 TYR HD2 H N N 350 TYR HE1 H N N 351 TYR HE2 H N N 352 TYR HH H N N 353 TYR HXT H N N 354 VAL N N N N 355 VAL CA C N S 356 VAL C C N N 357 VAL O O N N 358 VAL CB C N N 359 VAL CG1 C N N 360 VAL CG2 C N N 361 VAL OXT O N N 362 VAL H H N N 363 VAL H2 H N N 364 VAL HA H N N 365 VAL HB H N N 366 VAL HG11 H N N 367 VAL HG12 H N N 368 VAL HG13 H N N 369 VAL HG21 H N N 370 VAL HG22 H N N 371 VAL HG23 H N N 372 VAL HXT H N N 373 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 ILE N CA sing N N 137 ILE N H sing N N 138 ILE N H2 sing N N 139 ILE CA C sing N N 140 ILE CA CB sing N N 141 ILE CA HA sing N N 142 ILE C O doub N N 143 ILE C OXT sing N N 144 ILE CB CG1 sing N N 145 ILE CB CG2 sing N N 146 ILE CB HB sing N N 147 ILE CG1 CD1 sing N N 148 ILE CG1 HG12 sing N N 149 ILE CG1 HG13 sing N N 150 ILE CG2 HG21 sing N N 151 ILE CG2 HG22 sing N N 152 ILE CG2 HG23 sing N N 153 ILE CD1 HD11 sing N N 154 ILE CD1 HD12 sing N N 155 ILE CD1 HD13 sing N N 156 ILE OXT HXT sing N N 157 LEU N CA sing N N 158 LEU N H sing N N 159 LEU N H2 sing N N 160 LEU CA C sing N N 161 LEU CA CB sing N N 162 LEU CA HA sing N N 163 LEU C O doub N N 164 LEU C OXT sing N N 165 LEU CB CG sing N N 166 LEU CB HB2 sing N N 167 LEU CB HB3 sing N N 168 LEU CG CD1 sing N N 169 LEU CG CD2 sing N N 170 LEU CG HG sing N N 171 LEU CD1 HD11 sing N N 172 LEU CD1 HD12 sing N N 173 LEU CD1 HD13 sing N N 174 LEU CD2 HD21 sing N N 175 LEU CD2 HD22 sing N N 176 LEU CD2 HD23 sing N N 177 LEU OXT HXT sing N N 178 LYS N CA sing N N 179 LYS N H sing N N 180 LYS N H2 sing N N 181 LYS CA C sing N N 182 LYS CA CB sing N N 183 LYS CA HA sing N N 184 LYS C O doub N N 185 LYS C OXT sing N N 186 LYS CB CG sing N N 187 LYS CB HB2 sing N N 188 LYS CB HB3 sing N N 189 LYS CG CD sing N N 190 LYS CG HG2 sing N N 191 LYS CG HG3 sing N N 192 LYS CD CE sing N N 193 LYS CD HD2 sing N N 194 LYS CD HD3 sing N N 195 LYS CE NZ sing N N 196 LYS CE HE2 sing N N 197 LYS CE HE3 sing N N 198 LYS NZ HZ1 sing N N 199 LYS NZ HZ2 sing N N 200 LYS NZ HZ3 sing N N 201 LYS OXT HXT sing N N 202 MET N CA sing N N 203 MET N H sing N N 204 MET N H2 sing N N 205 MET CA C sing N N 206 MET CA CB sing N N 207 MET CA HA sing N N 208 MET C O doub N N 209 MET C OXT sing N N 210 MET CB CG sing N N 211 MET CB HB2 sing N N 212 MET CB HB3 sing N N 213 MET CG SD sing N N 214 MET CG HG2 sing N N 215 MET CG HG3 sing N N 216 MET SD CE sing N N 217 MET CE HE1 sing N N 218 MET CE HE2 sing N N 219 MET CE HE3 sing N N 220 MET OXT HXT sing N N 221 PHE N CA sing N N 222 PHE N H sing N N 223 PHE N H2 sing N N 224 PHE CA C sing N N 225 PHE CA CB sing N N 226 PHE CA HA sing N N 227 PHE C O doub N N 228 PHE C OXT sing N N 229 PHE CB CG sing N N 230 PHE CB HB2 sing N N 231 PHE CB HB3 sing N N 232 PHE CG CD1 doub Y N 233 PHE CG CD2 sing Y N 234 PHE CD1 CE1 sing Y N 235 PHE CD1 HD1 sing N N 236 PHE CD2 CE2 doub Y N 237 PHE CD2 HD2 sing N N 238 PHE CE1 CZ doub Y N 239 PHE CE1 HE1 sing N N 240 PHE CE2 CZ sing Y N 241 PHE CE2 HE2 sing N N 242 PHE CZ HZ sing N N 243 PHE OXT HXT sing N N 244 PRO N CA sing N N 245 PRO N CD sing N N 246 PRO N H sing N N 247 PRO CA C sing N N 248 PRO CA CB sing N N 249 PRO CA HA sing N N 250 PRO C O doub N N 251 PRO C OXT sing N N 252 PRO CB CG sing N N 253 PRO CB HB2 sing N N 254 PRO CB HB3 sing N N 255 PRO CG CD sing N N 256 PRO CG HG2 sing N N 257 PRO CG HG3 sing N N 258 PRO CD HD2 sing N N 259 PRO CD HD3 sing N N 260 PRO OXT HXT sing N N 261 SER N CA sing N N 262 SER N H sing N N 263 SER N H2 sing N N 264 SER CA C sing N N 265 SER CA CB sing N N 266 SER CA HA sing N N 267 SER C O doub N N 268 SER C OXT sing N N 269 SER CB OG sing N N 270 SER CB HB2 sing N N 271 SER CB HB3 sing N N 272 SER OG HG sing N N 273 SER OXT HXT sing N N 274 THR N CA sing N N 275 THR N H sing N N 276 THR N H2 sing N N 277 THR CA C sing N N 278 THR CA CB sing N N 279 THR CA HA sing N N 280 THR C O doub N N 281 THR C OXT sing N N 282 THR CB OG1 sing N N 283 THR CB CG2 sing N N 284 THR CB HB sing N N 285 THR OG1 HG1 sing N N 286 THR CG2 HG21 sing N N 287 THR CG2 HG22 sing N N 288 THR CG2 HG23 sing N N 289 THR OXT HXT sing N N 290 TRP N CA sing N N 291 TRP N H sing N N 292 TRP N H2 sing N N 293 TRP CA C sing N N 294 TRP CA CB sing N N 295 TRP CA HA sing N N 296 TRP C O doub N N 297 TRP C OXT sing N N 298 TRP CB CG sing N N 299 TRP CB HB2 sing N N 300 TRP CB HB3 sing N N 301 TRP CG CD1 doub Y N 302 TRP CG CD2 sing Y N 303 TRP CD1 NE1 sing Y N 304 TRP CD1 HD1 sing N N 305 TRP CD2 CE2 doub Y N 306 TRP CD2 CE3 sing Y N 307 TRP NE1 CE2 sing Y N 308 TRP NE1 HE1 sing N N 309 TRP CE2 CZ2 sing Y N 310 TRP CE3 CZ3 doub Y N 311 TRP CE3 HE3 sing N N 312 TRP CZ2 CH2 doub Y N 313 TRP CZ2 HZ2 sing N N 314 TRP CZ3 CH2 sing Y N 315 TRP CZ3 HZ3 sing N N 316 TRP CH2 HH2 sing N N 317 TRP OXT HXT sing N N 318 TYR N CA sing N N 319 TYR N H sing N N 320 TYR N H2 sing N N 321 TYR CA C sing N N 322 TYR CA CB sing N N 323 TYR CA HA sing N N 324 TYR C O doub N N 325 TYR C OXT sing N N 326 TYR CB CG sing N N 327 TYR CB HB2 sing N N 328 TYR CB HB3 sing N N 329 TYR CG CD1 doub Y N 330 TYR CG CD2 sing Y N 331 TYR CD1 CE1 sing Y N 332 TYR CD1 HD1 sing N N 333 TYR CD2 CE2 doub Y N 334 TYR CD2 HD2 sing N N 335 TYR CE1 CZ doub Y N 336 TYR CE1 HE1 sing N N 337 TYR CE2 CZ sing Y N 338 TYR CE2 HE2 sing N N 339 TYR CZ OH sing N N 340 TYR OH HH sing N N 341 TYR OXT HXT sing N N 342 VAL N CA sing N N 343 VAL N H sing N N 344 VAL N H2 sing N N 345 VAL CA C sing N N 346 VAL CA CB sing N N 347 VAL CA HA sing N N 348 VAL C O doub N N 349 VAL C OXT sing N N 350 VAL CB CG1 sing N N 351 VAL CB CG2 sing N N 352 VAL CB HB sing N N 353 VAL CG1 HG11 sing N N 354 VAL CG1 HG12 sing N N 355 VAL CG1 HG13 sing N N 356 VAL CG2 HG21 sing N N 357 VAL CG2 HG22 sing N N 358 VAL CG2 HG23 sing N N 359 VAL OXT HXT sing N N 360 # loop_ _em_buffer_component.buffer_id _em_buffer_component.id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.name 1 1 25 mM ? Tris-HCl 1 2 150 mM NaCl 'Sodium Chloride' # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING ONLY' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.546 # _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 32630 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'synthetic construct' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 1 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 469008 _em_entity_assembly_recombinant.organism 'Escherichia coli BL21(DE3)' _em_entity_assembly_recombinant.plasmid pET28b _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 50.4 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode COUNTING _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 502 # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details ? _em_particle_selection.method ? _em_particle_selection.num_particles_selected 304308 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? cryoSPARC 2.9.0 1 ? ? 2 'IMAGE ACQUISITION' ? Leginon ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? RELION 3.0 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? 'UCSF Chimera' ? ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? RELION 3.0 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? RELION 3.0 1 ? ? 11 CLASSIFICATION ? RELION 3.0 1 ? ? 12 RECONSTRUCTION ? RELION 3.0 1 ? ? 13 'MODEL REFINEMENT' ? Rosetta ? ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 4.2 _em_specimen.details ;Nanoparticles are generated by co-expression of two components (A and B) in E coli. Assembled particles are purified using a combination of Ni-affinity chromatography and gel-filtration chromatography. ; _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Bill & Melinda Gates Foundation' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number OPP1115782 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 6VFH _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_