data_6VFV # _entry.id 6VFV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6VFV pdb_00006vfv 10.2210/pdb6vfv/pdb WWPDB D_1000242758 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6VFV _pdbx_database_status.recvd_initial_deposition_date 2020-01-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Harrison, O.J.' 1 0000-0002-6443-7645 'Brasch, J.' 2 0000-0002-1831-6244 'Shapiro, L.' 3 0000-0001-9943-8819 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2211-1247 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 30 _citation.language ? _citation.page_first 2655 _citation.page_last 2671.e7 _citation.title 'Family-wide Structural and Biophysical Analysis of Binding Interactions among Non-clustered delta-Protocadherins.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.celrep.2020.02.003 _citation.pdbx_database_id_PubMed 32101743 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Harrison, O.J.' 1 ? primary 'Brasch, J.' 2 ? primary 'Katsamba, P.S.' 3 ? primary 'Ahlsen, G.' 4 ? primary 'Noble, A.J.' 5 ? primary 'Dan, H.' 6 ? primary 'Sampogna, R.V.' 7 ? primary 'Potter, C.S.' 8 ? primary 'Carragher, B.' 9 ? primary 'Honig, B.' 10 ? primary 'Shapiro, L.' 11 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 98.457 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6VFV _cell.details ? _cell.formula_units_Z ? _cell.length_a 41.658 _cell.length_a_esd ? _cell.length_b 29.498 _cell.length_b_esd ? _cell.length_c 92.442 _cell.length_c_esd ? _cell.volume 112360.112 _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VFV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Protocadherin-8 24599.246 1 ? ? ? ? 2 branched man ;alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; 894.823 1 ? ? ? ? 3 non-polymer man alpha-D-mannopyranose 180.156 1 ? ? ? ? 4 non-polymer man 'CALCIUM ION' 40.078 4 ? ? ? ? 5 non-polymer man 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 6 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 7 water nat water 18.015 7 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Arcadlin # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ENDNAPLFTRPVYEVSVRENNPPGAYLATVAARDRDLGRNGQVTYRLLEAEVGRAGGAVSTYVSVDPATGAIYALRSFDY ETLRQLDVRIQASDGGSPQLSSSALVQVRVLDQNDHAPVLVHPAPANGSLEVAVPGRTAKDTVVARVQARDADEGANGEL AFELQQQEPREAFAIGRRTGEILLTGDLSQEPPGRVFRALLVISDGGRPPLTTTATVSFVVTAHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;ENDNAPLFTRPVYEVSVRENNPPGAYLATVAARDRDLGRNGQVTYRLLEAEVGRAGGAVSTYVSVDPATGAIYALRSFDY ETLRQLDVRIQASDGGSPQLSSSALVQVRVLDQNDHAPVLVHPAPANGSLEVAVPGRTAKDTVVARVQARDADEGANGEL AFELQQQEPREAFAIGRRTGEILLTGDLSQEPPGRVFRALLVISDGGRPPLTTTATVSFVVTAHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 ASN n 1 3 ASP n 1 4 ASN n 1 5 ALA n 1 6 PRO n 1 7 LEU n 1 8 PHE n 1 9 THR n 1 10 ARG n 1 11 PRO n 1 12 VAL n 1 13 TYR n 1 14 GLU n 1 15 VAL n 1 16 SER n 1 17 VAL n 1 18 ARG n 1 19 GLU n 1 20 ASN n 1 21 ASN n 1 22 PRO n 1 23 PRO n 1 24 GLY n 1 25 ALA n 1 26 TYR n 1 27 LEU n 1 28 ALA n 1 29 THR n 1 30 VAL n 1 31 ALA n 1 32 ALA n 1 33 ARG n 1 34 ASP n 1 35 ARG n 1 36 ASP n 1 37 LEU n 1 38 GLY n 1 39 ARG n 1 40 ASN n 1 41 GLY n 1 42 GLN n 1 43 VAL n 1 44 THR n 1 45 TYR n 1 46 ARG n 1 47 LEU n 1 48 LEU n 1 49 GLU n 1 50 ALA n 1 51 GLU n 1 52 VAL n 1 53 GLY n 1 54 ARG n 1 55 ALA n 1 56 GLY n 1 57 GLY n 1 58 ALA n 1 59 VAL n 1 60 SER n 1 61 THR n 1 62 TYR n 1 63 VAL n 1 64 SER n 1 65 VAL n 1 66 ASP n 1 67 PRO n 1 68 ALA n 1 69 THR n 1 70 GLY n 1 71 ALA n 1 72 ILE n 1 73 TYR n 1 74 ALA n 1 75 LEU n 1 76 ARG n 1 77 SER n 1 78 PHE n 1 79 ASP n 1 80 TYR n 1 81 GLU n 1 82 THR n 1 83 LEU n 1 84 ARG n 1 85 GLN n 1 86 LEU n 1 87 ASP n 1 88 VAL n 1 89 ARG n 1 90 ILE n 1 91 GLN n 1 92 ALA n 1 93 SER n 1 94 ASP n 1 95 GLY n 1 96 GLY n 1 97 SER n 1 98 PRO n 1 99 GLN n 1 100 LEU n 1 101 SER n 1 102 SER n 1 103 SER n 1 104 ALA n 1 105 LEU n 1 106 VAL n 1 107 GLN n 1 108 VAL n 1 109 ARG n 1 110 VAL n 1 111 LEU n 1 112 ASP n 1 113 GLN n 1 114 ASN n 1 115 ASP n 1 116 HIS n 1 117 ALA n 1 118 PRO n 1 119 VAL n 1 120 LEU n 1 121 VAL n 1 122 HIS n 1 123 PRO n 1 124 ALA n 1 125 PRO n 1 126 ALA n 1 127 ASN n 1 128 GLY n 1 129 SER n 1 130 LEU n 1 131 GLU n 1 132 VAL n 1 133 ALA n 1 134 VAL n 1 135 PRO n 1 136 GLY n 1 137 ARG n 1 138 THR n 1 139 ALA n 1 140 LYS n 1 141 ASP n 1 142 THR n 1 143 VAL n 1 144 VAL n 1 145 ALA n 1 146 ARG n 1 147 VAL n 1 148 GLN n 1 149 ALA n 1 150 ARG n 1 151 ASP n 1 152 ALA n 1 153 ASP n 1 154 GLU n 1 155 GLY n 1 156 ALA n 1 157 ASN n 1 158 GLY n 1 159 GLU n 1 160 LEU n 1 161 ALA n 1 162 PHE n 1 163 GLU n 1 164 LEU n 1 165 GLN n 1 166 GLN n 1 167 GLN n 1 168 GLU n 1 169 PRO n 1 170 ARG n 1 171 GLU n 1 172 ALA n 1 173 PHE n 1 174 ALA n 1 175 ILE n 1 176 GLY n 1 177 ARG n 1 178 ARG n 1 179 THR n 1 180 GLY n 1 181 GLU n 1 182 ILE n 1 183 LEU n 1 184 LEU n 1 185 THR n 1 186 GLY n 1 187 ASP n 1 188 LEU n 1 189 SER n 1 190 GLN n 1 191 GLU n 1 192 PRO n 1 193 PRO n 1 194 GLY n 1 195 ARG n 1 196 VAL n 1 197 PHE n 1 198 ARG n 1 199 ALA n 1 200 LEU n 1 201 LEU n 1 202 VAL n 1 203 ILE n 1 204 SER n 1 205 ASP n 1 206 GLY n 1 207 GLY n 1 208 ARG n 1 209 PRO n 1 210 PRO n 1 211 LEU n 1 212 THR n 1 213 THR n 1 214 THR n 1 215 ALA n 1 216 THR n 1 217 VAL n 1 218 SER n 1 219 PHE n 1 220 VAL n 1 221 VAL n 1 222 THR n 1 223 ALA n 1 224 HIS n 1 225 HIS n 1 226 HIS n 1 227 HIS n 1 228 HIS n 1 229 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 229 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PCDH8 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line HEK293 _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PCDH8_HUMAN _struct_ref.pdbx_db_accession O95206 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ENDNAPLFTRPVYEVSVRENNPPGAYLATVAARDRDLGRNGQVTYRLLEAEVGRAGGAVSTYVSVDPATGAIYALRSFDY ETLRQLDVRIQASDGGSPQLSSSALVQVRVLDQNDHAPVLVHPAPANGSLEVAVPGRTAKDTVVARVQARDADEGANGEL AFELQQQEPREAFAIGRRTGEILLTGDLSQEPPGRVFRALLVISDGGRPPLTTTATVSFVVTA ; _struct_ref.pdbx_align_begin 490 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6VFV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 223 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O95206 _struct_ref_seq.db_align_beg 490 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 712 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 461 _struct_ref_seq.pdbx_auth_seq_align_end 683 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6VFV HIS A 224 ? UNP O95206 ? ? 'expression tag' 684 1 1 6VFV HIS A 225 ? UNP O95206 ? ? 'expression tag' 685 2 1 6VFV HIS A 226 ? UNP O95206 ? ? 'expression tag' 686 3 1 6VFV HIS A 227 ? UNP O95206 ? ? 'expression tag' 687 4 1 6VFV HIS A 228 ? UNP O95206 ? ? 'expression tag' 688 5 1 6VFV HIS A 229 ? UNP O95206 ? ? 'expression tag' 689 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose 'alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose' 'C6 H12 O5' 164.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6VFV _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.37 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 48.11 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 296 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;10% PEG 20 000 (w/v), 20% (v/v) PEG 550 monomethylether, 0.03M diethyleneglycol, 0.03M triethyleneglycol, 0.03M tetraethyleneglycol, 0.03M pentaethyleneglycol, 0.1M MES/imidazole buffer pH 6.5 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-04-16 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 45.4199136562 _reflns.entry_id 6VFV _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.9 _reflns.d_resolution_low 40 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 5168 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.3 _reflns.pdbx_Rmerge_I_obs 0.13 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.2 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.16 _reflns.pdbx_Rpim_I_all 0.08 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.99 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.9 _reflns_shell.d_res_low 3.07 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.7 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 803 _reflns_shell.percent_possible_all 99.1 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.57 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 2.3 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.72 _reflns_shell.pdbx_Rpim_I_all 0.44 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.71 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 52.68 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6VFV _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.9 _refine.ls_d_res_low 19.9 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 5139 _refine.ls_number_reflns_R_free 253 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.5 _refine.ls_percent_reflns_R_free 4.9 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.227 _refine.ls_R_factor_R_free 0.264 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2250 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5SZR _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.0 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.8 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 21.39 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3763 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.9 _refine_hist.d_res_low 19.9 _refine_hist.number_atoms_solvent 7 _refine_hist.number_atoms_total 1757 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1670 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 80 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.00494428699728 ? 1778 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.771599838424 ? 2434 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0448079089203 ? 298 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.00468172780222 ? 320 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 13.8085684715 ? 1086 ? f_dihedral_angle_d ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.9 _refine_ls_shell.d_res_low 3.65 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 121 _refine_ls_shell.number_reflns_R_work 2414 _refine_ls_shell.percent_reflns_obs 99.6070726916 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3455 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.2783 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6VFV _struct.title 'Crystal structure of human protocadherin 8 EC5-EC6' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6VFV _struct_keywords.text ;cadherin extracellular region, non-clustered delta2 protocadherin, homophilic adhesion/recognition calcium-dependent adhesion molecule, CELL ADHESION ; _struct_keywords.pdbx_keywords 'CELL ADHESION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 5 ? I N N 6 ? J N N 7 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LEU A 37 ? GLN A 42 ? LEU A 497 GLN A 502 5 ? 6 HELX_P HELX_P2 AA2 ALA A 58 ? THR A 61 ? ALA A 518 THR A 521 5 ? 4 HELX_P HELX_P3 AA3 GLU A 154 ? GLY A 158 ? GLU A 614 GLY A 618 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A SER 101 OG ? ? ? 1_555 C MAN . C1 ? ? A SER 561 A MAN 706 1_555 ? ? ? ? ? ? ? 1.443 ? O-Glycosylation covale2 covale one ? A ASN 127 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 587 B NAG 1 1_555 ? ? ? ? ? ? ? 1.448 ? N-Glycosylation covale3 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.455 ? ? covale4 covale both ? B NAG . O6 ? ? ? 1_555 B FUC . C1 ? ? B NAG 1 B FUC 5 1_555 ? ? ? ? ? ? ? 1.454 ? ? covale5 covale both ? B NAG . O4 ? ? ? 1_555 B BMA . C1 ? ? B NAG 2 B BMA 3 1_555 ? ? ? ? ? ? ? 1.458 ? ? covale6 covale both ? B BMA . O6 ? ? ? 1_555 B MAN . C1 ? ? B BMA 3 B MAN 4 1_555 ? ? ? ? ? ? ? 1.450 ? ? metalc1 metalc ? ? A ASN 2 OD1 ? ? ? 1_555 D CA . CA ? ? A ASN 462 A CA 707 1_555 ? ? ? ? ? ? ? 2.248 ? ? metalc2 metalc ? ? A ASN 4 O ? ? ? 1_555 D CA . CA ? ? A ASN 464 A CA 707 1_555 ? ? ? ? ? ? ? 2.444 ? ? metalc3 metalc ? ? A GLU 19 OE2 ? ? ? 1_555 E CA . CA ? ? A GLU 479 A CA 708 1_555 ? ? ? ? ? ? ? 2.165 ? ? metalc4 metalc ? ? A GLU 19 OE1 ? ? ? 1_555 F CA . CA ? ? A GLU 479 A CA 709 1_555 ? ? ? ? ? ? ? 2.769 ? ? metalc5 metalc ? ? A ASP 34 OD1 ? ? ? 1_555 D CA . CA ? ? A ASP 494 A CA 707 1_555 ? ? ? ? ? ? ? 2.477 ? ? metalc6 metalc ? ? A ASP 34 OD2 ? ? ? 1_555 D CA . CA ? ? A ASP 494 A CA 707 1_555 ? ? ? ? ? ? ? 2.291 ? ? metalc7 metalc ? ? A ASP 36 OD1 ? ? ? 1_555 D CA . CA ? ? A ASP 496 A CA 707 1_555 ? ? ? ? ? ? ? 2.548 ? ? metalc8 metalc ? ? A ASN 40 O ? ? ? 1_555 D CA . CA ? ? A ASN 500 A CA 707 1_555 ? ? ? ? ? ? ? 2.422 ? ? metalc9 metalc ? ? A ASP 79 OD1 ? ? ? 1_555 E CA . CA ? ? A ASP 539 A CA 708 1_555 ? ? ? ? ? ? ? 2.241 ? ? metalc10 metalc ? ? A GLU 81 OE1 ? ? ? 1_555 E CA . CA ? ? A GLU 541 A CA 708 1_555 ? ? ? ? ? ? ? 2.622 ? ? metalc11 metalc ? ? A GLU 81 OE1 ? ? ? 1_555 F CA . CA ? ? A GLU 541 A CA 709 1_555 ? ? ? ? ? ? ? 3.137 ? ? metalc12 metalc ? ? A GLU 81 OE2 ? ? ? 1_555 F CA . CA ? ? A GLU 541 A CA 709 1_555 ? ? ? ? ? ? ? 2.638 ? ? metalc13 metalc ? ? A ASP 94 OD2 ? ? ? 1_555 D CA . CA ? ? A ASP 554 A CA 707 1_555 ? ? ? ? ? ? ? 2.703 ? ? metalc14 metalc ? ? A ASP 112 OD1 ? ? ? 1_555 F CA . CA ? ? A ASP 572 A CA 709 1_555 ? ? ? ? ? ? ? 2.278 ? ? metalc15 metalc ? ? A GLN 113 O ? ? ? 1_555 F CA . CA ? ? A GLN 573 A CA 709 1_555 ? ? ? ? ? ? ? 2.480 ? ? metalc16 metalc ? ? A ASN 114 OD1 ? ? ? 1_555 G CA . CA ? ? A ASN 574 A CA 710 1_555 ? ? ? ? ? ? ? 2.332 ? ? metalc17 metalc ? ? A ASP 115 OD2 ? ? ? 1_555 E CA . CA ? ? A ASP 575 A CA 708 1_555 ? ? ? ? ? ? ? 2.605 ? ? metalc18 metalc ? ? A ASP 115 OD1 ? ? ? 1_555 F CA . CA ? ? A ASP 575 A CA 709 1_555 ? ? ? ? ? ? ? 2.249 ? ? metalc19 metalc ? ? A HIS 116 O ? ? ? 1_555 G CA . CA ? ? A HIS 576 A CA 710 1_555 ? ? ? ? ? ? ? 2.390 ? ? metalc20 metalc ? ? A ASP 151 OD1 ? ? ? 1_555 G CA . CA ? ? A ASP 611 A CA 710 1_555 ? ? ? ? ? ? ? 2.801 ? ? metalc21 metalc ? ? A ASP 151 OD2 ? ? ? 1_555 G CA . CA ? ? A ASP 611 A CA 710 1_555 ? ? ? ? ? ? ? 2.375 ? ? metalc22 metalc ? ? A ASP 153 OD1 ? ? ? 1_555 F CA . CA ? ? A ASP 613 A CA 709 1_555 ? ? ? ? ? ? ? 2.497 ? ? metalc23 metalc ? ? A ASP 153 OD2 ? ? ? 1_555 G CA . CA ? ? A ASP 613 A CA 710 1_555 ? ? ? ? ? ? ? 2.519 ? ? metalc24 metalc ? ? A ASN 157 O ? ? ? 1_555 G CA . CA ? ? A ASN 617 A CA 710 1_555 ? ? ? ? ? ? ? 2.408 ? ? metalc25 metalc ? ? A ASP 205 OD2 ? ? ? 1_555 G CA . CA ? ? A ASP 665 A CA 710 1_555 ? ? ? ? ? ? ? 2.339 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 97 A . ? SER 557 A PRO 98 A ? PRO 558 A 1 1.34 2 HIS 122 A . ? HIS 582 A PRO 123 A ? PRO 583 A 1 -3.96 3 GLU 168 A . ? GLU 628 A PRO 169 A ? PRO 629 A 1 2.96 4 ARG 208 A . ? ARG 668 A PRO 209 A ? PRO 669 A 1 0.69 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 4 ? AA3 ? 3 ? AA4 ? 2 ? AA5 ? 4 ? AA6 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA4 1 2 ? anti-parallel AA5 1 2 ? parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 7 ? PHE A 8 ? LEU A 467 PHE A 468 AA1 2 ALA A 32 ? ARG A 33 ? ALA A 492 ARG A 493 AA2 1 VAL A 12 ? ARG A 18 ? VAL A 472 ARG A 478 AA2 2 SER A 101 ? LEU A 111 ? SER A 561 LEU A 571 AA2 3 GLN A 85 ? SER A 93 ? GLN A 545 SER A 553 AA2 4 THR A 44 ? LEU A 47 ? THR A 504 LEU A 507 AA3 1 TYR A 26 ? THR A 29 ? TYR A 486 THR A 489 AA3 2 ALA A 71 ? ALA A 74 ? ALA A 531 ALA A 534 AA3 3 VAL A 63 ? VAL A 65 ? VAL A 523 VAL A 525 AA4 1 VAL A 119 ? HIS A 122 ? VAL A 579 HIS A 582 AA4 2 GLN A 148 ? ARG A 150 ? GLN A 608 ARG A 610 AA5 1 SER A 129 ? PRO A 135 ? SER A 589 PRO A 595 AA5 2 THR A 212 ? THR A 222 ? THR A 672 THR A 682 AA5 3 VAL A 196 ? ASP A 205 ? VAL A 656 ASP A 665 AA5 4 LEU A 160 ? GLU A 168 ? LEU A 620 GLU A 628 AA6 1 VAL A 143 ? ARG A 146 ? VAL A 603 ARG A 606 AA6 2 GLU A 181 ? LEU A 184 ? GLU A 641 LEU A 644 AA6 3 PHE A 173 ? ILE A 175 ? PHE A 633 ILE A 635 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LEU A 7 ? N LEU A 467 O ARG A 33 ? O ARG A 493 AA2 1 2 N VAL A 17 ? N VAL A 477 O LEU A 111 ? O LEU A 571 AA2 2 3 O VAL A 106 ? O VAL A 566 N VAL A 88 ? N VAL A 548 AA2 3 4 O SER A 93 ? O SER A 553 N THR A 44 ? N THR A 504 AA3 1 2 N ALA A 28 ? N ALA A 488 O ILE A 72 ? O ILE A 532 AA3 2 3 O TYR A 73 ? O TYR A 533 N SER A 64 ? N SER A 524 AA4 1 2 N HIS A 122 ? N HIS A 582 O GLN A 148 ? O GLN A 608 AA5 1 2 N LEU A 130 ? N LEU A 590 O THR A 216 ? O THR A 676 AA5 2 3 O PHE A 219 ? O PHE A 679 N PHE A 197 ? N PHE A 657 AA5 3 4 O VAL A 202 ? O VAL A 662 N GLU A 163 ? N GLU A 623 AA6 1 2 N VAL A 144 ? N VAL A 604 O ILE A 182 ? O ILE A 642 AA6 2 3 O LEU A 183 ? O LEU A 643 N ALA A 174 ? N ALA A 634 # _atom_sites.entry_id 6VFV _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.024005 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003569 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.033901 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010937 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 25.62398 1.50364 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? CA ? ? 16.26893 3.65395 3.58509 77.28589 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? CL ? ? 9.50761 7.44341 1.04373 23.83732 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 24.73122 6.32584 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 19.97189 1.75589 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 7.96527 ? 9.05267 ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 461 461 GLU GLU A . n A 1 2 ASN 2 462 462 ASN ASN A . n A 1 3 ASP 3 463 463 ASP ASP A . n A 1 4 ASN 4 464 464 ASN ASN A . n A 1 5 ALA 5 465 465 ALA ALA A . n A 1 6 PRO 6 466 466 PRO PRO A . n A 1 7 LEU 7 467 467 LEU LEU A . n A 1 8 PHE 8 468 468 PHE PHE A . n A 1 9 THR 9 469 469 THR THR A . n A 1 10 ARG 10 470 470 ARG ARG A . n A 1 11 PRO 11 471 471 PRO PRO A . n A 1 12 VAL 12 472 472 VAL VAL A . n A 1 13 TYR 13 473 473 TYR TYR A . n A 1 14 GLU 14 474 474 GLU GLU A . n A 1 15 VAL 15 475 475 VAL VAL A . n A 1 16 SER 16 476 476 SER SER A . n A 1 17 VAL 17 477 477 VAL VAL A . n A 1 18 ARG 18 478 478 ARG ARG A . n A 1 19 GLU 19 479 479 GLU GLU A . n A 1 20 ASN 20 480 480 ASN ASN A . n A 1 21 ASN 21 481 481 ASN ASN A . n A 1 22 PRO 22 482 482 PRO PRO A . n A 1 23 PRO 23 483 483 PRO PRO A . n A 1 24 GLY 24 484 484 GLY GLY A . n A 1 25 ALA 25 485 485 ALA ALA A . n A 1 26 TYR 26 486 486 TYR TYR A . n A 1 27 LEU 27 487 487 LEU LEU A . n A 1 28 ALA 28 488 488 ALA ALA A . n A 1 29 THR 29 489 489 THR THR A . n A 1 30 VAL 30 490 490 VAL VAL A . n A 1 31 ALA 31 491 491 ALA ALA A . n A 1 32 ALA 32 492 492 ALA ALA A . n A 1 33 ARG 33 493 493 ARG ARG A . n A 1 34 ASP 34 494 494 ASP ASP A . n A 1 35 ARG 35 495 495 ARG ARG A . n A 1 36 ASP 36 496 496 ASP ASP A . n A 1 37 LEU 37 497 497 LEU LEU A . n A 1 38 GLY 38 498 498 GLY GLY A . n A 1 39 ARG 39 499 499 ARG ARG A . n A 1 40 ASN 40 500 500 ASN ASN A . n A 1 41 GLY 41 501 501 GLY GLY A . n A 1 42 GLN 42 502 502 GLN GLN A . n A 1 43 VAL 43 503 503 VAL VAL A . n A 1 44 THR 44 504 504 THR THR A . n A 1 45 TYR 45 505 505 TYR TYR A . n A 1 46 ARG 46 506 506 ARG ARG A . n A 1 47 LEU 47 507 507 LEU LEU A . n A 1 48 LEU 48 508 508 LEU LEU A . n A 1 49 GLU 49 509 509 GLU GLU A . n A 1 50 ALA 50 510 510 ALA ALA A . n A 1 51 GLU 51 511 511 GLU GLU A . n A 1 52 VAL 52 512 512 VAL VAL A . n A 1 53 GLY 53 513 513 GLY GLY A . n A 1 54 ARG 54 514 514 ARG ARG A . n A 1 55 ALA 55 515 515 ALA ALA A . n A 1 56 GLY 56 516 516 GLY GLY A . n A 1 57 GLY 57 517 517 GLY GLY A . n A 1 58 ALA 58 518 518 ALA ALA A . n A 1 59 VAL 59 519 519 VAL VAL A . n A 1 60 SER 60 520 520 SER SER A . n A 1 61 THR 61 521 521 THR THR A . n A 1 62 TYR 62 522 522 TYR TYR A . n A 1 63 VAL 63 523 523 VAL VAL A . n A 1 64 SER 64 524 524 SER SER A . n A 1 65 VAL 65 525 525 VAL VAL A . n A 1 66 ASP 66 526 526 ASP ASP A . n A 1 67 PRO 67 527 527 PRO PRO A . n A 1 68 ALA 68 528 528 ALA ALA A . n A 1 69 THR 69 529 529 THR THR A . n A 1 70 GLY 70 530 530 GLY GLY A . n A 1 71 ALA 71 531 531 ALA ALA A . n A 1 72 ILE 72 532 532 ILE ILE A . n A 1 73 TYR 73 533 533 TYR TYR A . n A 1 74 ALA 74 534 534 ALA ALA A . n A 1 75 LEU 75 535 535 LEU LEU A . n A 1 76 ARG 76 536 536 ARG ARG A . n A 1 77 SER 77 537 537 SER SER A . n A 1 78 PHE 78 538 538 PHE PHE A . n A 1 79 ASP 79 539 539 ASP ASP A . n A 1 80 TYR 80 540 540 TYR TYR A . n A 1 81 GLU 81 541 541 GLU GLU A . n A 1 82 THR 82 542 542 THR THR A . n A 1 83 LEU 83 543 543 LEU LEU A . n A 1 84 ARG 84 544 544 ARG ARG A . n A 1 85 GLN 85 545 545 GLN GLN A . n A 1 86 LEU 86 546 546 LEU LEU A . n A 1 87 ASP 87 547 547 ASP ASP A . n A 1 88 VAL 88 548 548 VAL VAL A . n A 1 89 ARG 89 549 549 ARG ARG A . n A 1 90 ILE 90 550 550 ILE ILE A . n A 1 91 GLN 91 551 551 GLN GLN A . n A 1 92 ALA 92 552 552 ALA ALA A . n A 1 93 SER 93 553 553 SER SER A . n A 1 94 ASP 94 554 554 ASP ASP A . n A 1 95 GLY 95 555 555 GLY GLY A . n A 1 96 GLY 96 556 556 GLY GLY A . n A 1 97 SER 97 557 557 SER SER A . n A 1 98 PRO 98 558 558 PRO PRO A . n A 1 99 GLN 99 559 559 GLN GLN A . n A 1 100 LEU 100 560 560 LEU LEU A . n A 1 101 SER 101 561 561 SER SER A . n A 1 102 SER 102 562 562 SER SER A . n A 1 103 SER 103 563 563 SER SER A . n A 1 104 ALA 104 564 564 ALA ALA A . n A 1 105 LEU 105 565 565 LEU LEU A . n A 1 106 VAL 106 566 566 VAL VAL A . n A 1 107 GLN 107 567 567 GLN GLN A . n A 1 108 VAL 108 568 568 VAL VAL A . n A 1 109 ARG 109 569 569 ARG ARG A . n A 1 110 VAL 110 570 570 VAL VAL A . n A 1 111 LEU 111 571 571 LEU LEU A . n A 1 112 ASP 112 572 572 ASP ASP A . n A 1 113 GLN 113 573 573 GLN GLN A . n A 1 114 ASN 114 574 574 ASN ASN A . n A 1 115 ASP 115 575 575 ASP ASP A . n A 1 116 HIS 116 576 576 HIS HIS A . n A 1 117 ALA 117 577 577 ALA ALA A . n A 1 118 PRO 118 578 578 PRO PRO A . n A 1 119 VAL 119 579 579 VAL VAL A . n A 1 120 LEU 120 580 580 LEU LEU A . n A 1 121 VAL 121 581 581 VAL VAL A . n A 1 122 HIS 122 582 582 HIS HIS A . n A 1 123 PRO 123 583 583 PRO PRO A . n A 1 124 ALA 124 584 584 ALA ALA A . n A 1 125 PRO 125 585 585 PRO PRO A . n A 1 126 ALA 126 586 586 ALA ALA A . n A 1 127 ASN 127 587 587 ASN ASN A . n A 1 128 GLY 128 588 588 GLY GLY A . n A 1 129 SER 129 589 589 SER SER A . n A 1 130 LEU 130 590 590 LEU LEU A . n A 1 131 GLU 131 591 591 GLU GLU A . n A 1 132 VAL 132 592 592 VAL VAL A . n A 1 133 ALA 133 593 593 ALA ALA A . n A 1 134 VAL 134 594 594 VAL VAL A . n A 1 135 PRO 135 595 595 PRO PRO A . n A 1 136 GLY 136 596 596 GLY GLY A . n A 1 137 ARG 137 597 597 ARG ARG A . n A 1 138 THR 138 598 598 THR THR A . n A 1 139 ALA 139 599 599 ALA ALA A . n A 1 140 LYS 140 600 600 LYS LYS A . n A 1 141 ASP 141 601 601 ASP ASP A . n A 1 142 THR 142 602 602 THR THR A . n A 1 143 VAL 143 603 603 VAL VAL A . n A 1 144 VAL 144 604 604 VAL VAL A . n A 1 145 ALA 145 605 605 ALA ALA A . n A 1 146 ARG 146 606 606 ARG ARG A . n A 1 147 VAL 147 607 607 VAL VAL A . n A 1 148 GLN 148 608 608 GLN GLN A . n A 1 149 ALA 149 609 609 ALA ALA A . n A 1 150 ARG 150 610 610 ARG ARG A . n A 1 151 ASP 151 611 611 ASP ASP A . n A 1 152 ALA 152 612 612 ALA ALA A . n A 1 153 ASP 153 613 613 ASP ASP A . n A 1 154 GLU 154 614 614 GLU GLU A . n A 1 155 GLY 155 615 615 GLY GLY A . n A 1 156 ALA 156 616 616 ALA ALA A . n A 1 157 ASN 157 617 617 ASN ASN A . n A 1 158 GLY 158 618 618 GLY GLY A . n A 1 159 GLU 159 619 619 GLU GLU A . n A 1 160 LEU 160 620 620 LEU LEU A . n A 1 161 ALA 161 621 621 ALA ALA A . n A 1 162 PHE 162 622 622 PHE PHE A . n A 1 163 GLU 163 623 623 GLU GLU A . n A 1 164 LEU 164 624 624 LEU LEU A . n A 1 165 GLN 165 625 625 GLN GLN A . n A 1 166 GLN 166 626 626 GLN GLN A . n A 1 167 GLN 167 627 627 GLN GLN A . n A 1 168 GLU 168 628 628 GLU GLU A . n A 1 169 PRO 169 629 629 PRO PRO A . n A 1 170 ARG 170 630 630 ARG ARG A . n A 1 171 GLU 171 631 631 GLU GLU A . n A 1 172 ALA 172 632 632 ALA ALA A . n A 1 173 PHE 173 633 633 PHE PHE A . n A 1 174 ALA 174 634 634 ALA ALA A . n A 1 175 ILE 175 635 635 ILE ILE A . n A 1 176 GLY 176 636 636 GLY GLY A . n A 1 177 ARG 177 637 637 ARG ARG A . n A 1 178 ARG 178 638 638 ARG ARG A . n A 1 179 THR 179 639 639 THR THR A . n A 1 180 GLY 180 640 640 GLY GLY A . n A 1 181 GLU 181 641 641 GLU GLU A . n A 1 182 ILE 182 642 642 ILE ILE A . n A 1 183 LEU 183 643 643 LEU LEU A . n A 1 184 LEU 184 644 644 LEU LEU A . n A 1 185 THR 185 645 645 THR THR A . n A 1 186 GLY 186 646 646 GLY GLY A . n A 1 187 ASP 187 647 647 ASP ASP A . n A 1 188 LEU 188 648 648 LEU LEU A . n A 1 189 SER 189 649 649 SER SER A . n A 1 190 GLN 190 650 650 GLN GLN A . n A 1 191 GLU 191 651 651 GLU GLU A . n A 1 192 PRO 192 652 652 PRO PRO A . n A 1 193 PRO 193 653 653 PRO PRO A . n A 1 194 GLY 194 654 654 GLY GLY A . n A 1 195 ARG 195 655 655 ARG ARG A . n A 1 196 VAL 196 656 656 VAL VAL A . n A 1 197 PHE 197 657 657 PHE PHE A . n A 1 198 ARG 198 658 658 ARG ARG A . n A 1 199 ALA 199 659 659 ALA ALA A . n A 1 200 LEU 200 660 660 LEU LEU A . n A 1 201 LEU 201 661 661 LEU LEU A . n A 1 202 VAL 202 662 662 VAL VAL A . n A 1 203 ILE 203 663 663 ILE ILE A . n A 1 204 SER 204 664 664 SER SER A . n A 1 205 ASP 205 665 665 ASP ASP A . n A 1 206 GLY 206 666 666 GLY GLY A . n A 1 207 GLY 207 667 667 GLY GLY A . n A 1 208 ARG 208 668 668 ARG ARG A . n A 1 209 PRO 209 669 669 PRO PRO A . n A 1 210 PRO 210 670 670 PRO PRO A . n A 1 211 LEU 211 671 671 LEU LEU A . n A 1 212 THR 212 672 672 THR THR A . n A 1 213 THR 213 673 673 THR THR A . n A 1 214 THR 214 674 674 THR THR A . n A 1 215 ALA 215 675 675 ALA ALA A . n A 1 216 THR 216 676 676 THR THR A . n A 1 217 VAL 217 677 677 VAL VAL A . n A 1 218 SER 218 678 678 SER SER A . n A 1 219 PHE 219 679 679 PHE PHE A . n A 1 220 VAL 220 680 680 VAL VAL A . n A 1 221 VAL 221 681 681 VAL VAL A . n A 1 222 THR 222 682 682 THR THR A . n A 1 223 ALA 223 683 ? ? ? A . n A 1 224 HIS 224 684 ? ? ? A . n A 1 225 HIS 225 685 ? ? ? A . n A 1 226 HIS 226 686 ? ? ? A . n A 1 227 HIS 227 687 ? ? ? A . n A 1 228 HIS 228 688 ? ? ? A . n A 1 229 HIS 229 689 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MAN 1 706 706 MAN MAN A . D 4 CA 1 707 1 CA CA A . E 4 CA 1 708 2 CA CA A . F 4 CA 1 709 3 CA CA A . G 4 CA 1 710 4 CA CA A . H 5 EDO 1 711 1 EDO EDO A . I 6 CL 1 712 1 CL CL A . J 7 HOH 1 801 8 HOH HOH A . J 7 HOH 2 802 6 HOH HOH A . J 7 HOH 3 803 3 HOH HOH A . J 7 HOH 4 804 7 HOH HOH A . J 7 HOH 5 805 4 HOH HOH A . J 7 HOH 6 806 9 HOH HOH A . J 7 HOH 7 807 10 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASN 2 ? A ASN 462 ? 1_555 CA ? D CA . ? A CA 707 ? 1_555 O ? A ASN 4 ? A ASN 464 ? 1_555 90.9 ? 2 OD1 ? A ASN 2 ? A ASN 462 ? 1_555 CA ? D CA . ? A CA 707 ? 1_555 OD1 ? A ASP 34 ? A ASP 494 ? 1_555 151.5 ? 3 O ? A ASN 4 ? A ASN 464 ? 1_555 CA ? D CA . ? A CA 707 ? 1_555 OD1 ? A ASP 34 ? A ASP 494 ? 1_555 87.3 ? 4 OD1 ? A ASN 2 ? A ASN 462 ? 1_555 CA ? D CA . ? A CA 707 ? 1_555 OD2 ? A ASP 34 ? A ASP 494 ? 1_555 150.8 ? 5 O ? A ASN 4 ? A ASN 464 ? 1_555 CA ? D CA . ? A CA 707 ? 1_555 OD2 ? A ASP 34 ? A ASP 494 ? 1_555 73.9 ? 6 OD1 ? A ASP 34 ? A ASP 494 ? 1_555 CA ? D CA . ? A CA 707 ? 1_555 OD2 ? A ASP 34 ? A ASP 494 ? 1_555 54.5 ? 7 OD1 ? A ASN 2 ? A ASN 462 ? 1_555 CA ? D CA . ? A CA 707 ? 1_555 OD1 ? A ASP 36 ? A ASP 496 ? 1_555 78.2 ? 8 O ? A ASN 4 ? A ASN 464 ? 1_555 CA ? D CA . ? A CA 707 ? 1_555 OD1 ? A ASP 36 ? A ASP 496 ? 1_555 74.5 ? 9 OD1 ? A ASP 34 ? A ASP 494 ? 1_555 CA ? D CA . ? A CA 707 ? 1_555 OD1 ? A ASP 36 ? A ASP 496 ? 1_555 128.2 ? 10 OD2 ? A ASP 34 ? A ASP 494 ? 1_555 CA ? D CA . ? A CA 707 ? 1_555 OD1 ? A ASP 36 ? A ASP 496 ? 1_555 73.8 ? 11 OD1 ? A ASN 2 ? A ASN 462 ? 1_555 CA ? D CA . ? A CA 707 ? 1_555 O ? A ASN 40 ? A ASN 500 ? 1_555 96.7 ? 12 O ? A ASN 4 ? A ASN 464 ? 1_555 CA ? D CA . ? A CA 707 ? 1_555 O ? A ASN 40 ? A ASN 500 ? 1_555 167.8 ? 13 OD1 ? A ASP 34 ? A ASP 494 ? 1_555 CA ? D CA . ? A CA 707 ? 1_555 O ? A ASN 40 ? A ASN 500 ? 1_555 90.4 ? 14 OD2 ? A ASP 34 ? A ASP 494 ? 1_555 CA ? D CA . ? A CA 707 ? 1_555 O ? A ASN 40 ? A ASN 500 ? 1_555 95.0 ? 15 OD1 ? A ASP 36 ? A ASP 496 ? 1_555 CA ? D CA . ? A CA 707 ? 1_555 O ? A ASN 40 ? A ASN 500 ? 1_555 97.7 ? 16 OD1 ? A ASN 2 ? A ASN 462 ? 1_555 CA ? D CA . ? A CA 707 ? 1_555 OD2 ? A ASP 94 ? A ASP 554 ? 1_555 73.1 ? 17 O ? A ASN 4 ? A ASN 464 ? 1_555 CA ? D CA . ? A CA 707 ? 1_555 OD2 ? A ASP 94 ? A ASP 554 ? 1_555 97.0 ? 18 OD1 ? A ASP 34 ? A ASP 494 ? 1_555 CA ? D CA . ? A CA 707 ? 1_555 OD2 ? A ASP 94 ? A ASP 554 ? 1_555 78.9 ? 19 OD2 ? A ASP 34 ? A ASP 494 ? 1_555 CA ? D CA . ? A CA 707 ? 1_555 OD2 ? A ASP 94 ? A ASP 554 ? 1_555 132.5 ? 20 OD1 ? A ASP 36 ? A ASP 496 ? 1_555 CA ? D CA . ? A CA 707 ? 1_555 OD2 ? A ASP 94 ? A ASP 554 ? 1_555 149.9 ? 21 O ? A ASN 40 ? A ASN 500 ? 1_555 CA ? D CA . ? A CA 707 ? 1_555 OD2 ? A ASP 94 ? A ASP 554 ? 1_555 94.3 ? 22 OE2 ? A GLU 19 ? A GLU 479 ? 1_555 CA ? E CA . ? A CA 708 ? 1_555 OD1 ? A ASP 79 ? A ASP 539 ? 1_555 73.8 ? 23 OE2 ? A GLU 19 ? A GLU 479 ? 1_555 CA ? E CA . ? A CA 708 ? 1_555 OE1 ? A GLU 81 ? A GLU 541 ? 1_555 72.3 ? 24 OD1 ? A ASP 79 ? A ASP 539 ? 1_555 CA ? E CA . ? A CA 708 ? 1_555 OE1 ? A GLU 81 ? A GLU 541 ? 1_555 79.7 ? 25 OE2 ? A GLU 19 ? A GLU 479 ? 1_555 CA ? E CA . ? A CA 708 ? 1_555 OD2 ? A ASP 115 ? A ASP 575 ? 1_555 69.6 ? 26 OD1 ? A ASP 79 ? A ASP 539 ? 1_555 CA ? E CA . ? A CA 708 ? 1_555 OD2 ? A ASP 115 ? A ASP 575 ? 1_555 143.2 ? 27 OE1 ? A GLU 81 ? A GLU 541 ? 1_555 CA ? E CA . ? A CA 708 ? 1_555 OD2 ? A ASP 115 ? A ASP 575 ? 1_555 92.7 ? 28 OE1 ? A GLU 19 ? A GLU 479 ? 1_555 CA ? F CA . ? A CA 709 ? 1_555 OE1 ? A GLU 81 ? A GLU 541 ? 1_555 79.6 ? 29 OE1 ? A GLU 19 ? A GLU 479 ? 1_555 CA ? F CA . ? A CA 709 ? 1_555 OE2 ? A GLU 81 ? A GLU 541 ? 1_555 95.6 ? 30 OE1 ? A GLU 81 ? A GLU 541 ? 1_555 CA ? F CA . ? A CA 709 ? 1_555 OE2 ? A GLU 81 ? A GLU 541 ? 1_555 43.6 ? 31 OE1 ? A GLU 19 ? A GLU 479 ? 1_555 CA ? F CA . ? A CA 709 ? 1_555 OD1 ? A ASP 112 ? A ASP 572 ? 1_555 79.4 ? 32 OE1 ? A GLU 81 ? A GLU 541 ? 1_555 CA ? F CA . ? A CA 709 ? 1_555 OD1 ? A ASP 112 ? A ASP 572 ? 1_555 124.4 ? 33 OE2 ? A GLU 81 ? A GLU 541 ? 1_555 CA ? F CA . ? A CA 709 ? 1_555 OD1 ? A ASP 112 ? A ASP 572 ? 1_555 88.5 ? 34 OE1 ? A GLU 19 ? A GLU 479 ? 1_555 CA ? F CA . ? A CA 709 ? 1_555 O ? A GLN 113 ? A GLN 573 ? 1_555 85.9 ? 35 OE1 ? A GLU 81 ? A GLU 541 ? 1_555 CA ? F CA . ? A CA 709 ? 1_555 O ? A GLN 113 ? A GLN 573 ? 1_555 153.0 ? 36 OE2 ? A GLU 81 ? A GLU 541 ? 1_555 CA ? F CA . ? A CA 709 ? 1_555 O ? A GLN 113 ? A GLN 573 ? 1_555 162.0 ? 37 OD1 ? A ASP 112 ? A ASP 572 ? 1_555 CA ? F CA . ? A CA 709 ? 1_555 O ? A GLN 113 ? A GLN 573 ? 1_555 74.2 ? 38 OE1 ? A GLU 19 ? A GLU 479 ? 1_555 CA ? F CA . ? A CA 709 ? 1_555 OD1 ? A ASP 115 ? A ASP 575 ? 1_555 86.0 ? 39 OE1 ? A GLU 81 ? A GLU 541 ? 1_555 CA ? F CA . ? A CA 709 ? 1_555 OD1 ? A ASP 115 ? A ASP 575 ? 1_555 87.5 ? 40 OE2 ? A GLU 81 ? A GLU 541 ? 1_555 CA ? F CA . ? A CA 709 ? 1_555 OD1 ? A ASP 115 ? A ASP 575 ? 1_555 129.1 ? 41 OD1 ? A ASP 112 ? A ASP 572 ? 1_555 CA ? F CA . ? A CA 709 ? 1_555 OD1 ? A ASP 115 ? A ASP 575 ? 1_555 141.0 ? 42 O ? A GLN 113 ? A GLN 573 ? 1_555 CA ? F CA . ? A CA 709 ? 1_555 OD1 ? A ASP 115 ? A ASP 575 ? 1_555 68.8 ? 43 OE1 ? A GLU 19 ? A GLU 479 ? 1_555 CA ? F CA . ? A CA 709 ? 1_555 OD1 ? A ASP 153 ? A ASP 613 ? 1_555 163.8 ? 44 OE1 ? A GLU 81 ? A GLU 541 ? 1_555 CA ? F CA . ? A CA 709 ? 1_555 OD1 ? A ASP 153 ? A ASP 613 ? 1_555 100.5 ? 45 OE2 ? A GLU 81 ? A GLU 541 ? 1_555 CA ? F CA . ? A CA 709 ? 1_555 OD1 ? A ASP 153 ? A ASP 613 ? 1_555 95.5 ? 46 OD1 ? A ASP 112 ? A ASP 572 ? 1_555 CA ? F CA . ? A CA 709 ? 1_555 OD1 ? A ASP 153 ? A ASP 613 ? 1_555 112.8 ? 47 O ? A GLN 113 ? A GLN 573 ? 1_555 CA ? F CA . ? A CA 709 ? 1_555 OD1 ? A ASP 153 ? A ASP 613 ? 1_555 87.2 ? 48 OD1 ? A ASP 115 ? A ASP 575 ? 1_555 CA ? F CA . ? A CA 709 ? 1_555 OD1 ? A ASP 153 ? A ASP 613 ? 1_555 77.7 ? 49 OD1 ? A ASN 114 ? A ASN 574 ? 1_555 CA ? G CA . ? A CA 710 ? 1_555 O ? A HIS 116 ? A HIS 576 ? 1_555 93.5 ? 50 OD1 ? A ASN 114 ? A ASN 574 ? 1_555 CA ? G CA . ? A CA 710 ? 1_555 OD1 ? A ASP 151 ? A ASP 611 ? 1_555 137.4 ? 51 O ? A HIS 116 ? A HIS 576 ? 1_555 CA ? G CA . ? A CA 710 ? 1_555 OD1 ? A ASP 151 ? A ASP 611 ? 1_555 87.6 ? 52 OD1 ? A ASN 114 ? A ASN 574 ? 1_555 CA ? G CA . ? A CA 710 ? 1_555 OD2 ? A ASP 151 ? A ASP 611 ? 1_555 173.1 ? 53 O ? A HIS 116 ? A HIS 576 ? 1_555 CA ? G CA . ? A CA 710 ? 1_555 OD2 ? A ASP 151 ? A ASP 611 ? 1_555 88.2 ? 54 OD1 ? A ASP 151 ? A ASP 611 ? 1_555 CA ? G CA . ? A CA 710 ? 1_555 OD2 ? A ASP 151 ? A ASP 611 ? 1_555 49.3 ? 55 OD1 ? A ASN 114 ? A ASN 574 ? 1_555 CA ? G CA . ? A CA 710 ? 1_555 OD2 ? A ASP 153 ? A ASP 613 ? 1_555 64.5 ? 56 O ? A HIS 116 ? A HIS 576 ? 1_555 CA ? G CA . ? A CA 710 ? 1_555 OD2 ? A ASP 153 ? A ASP 613 ? 1_555 77.8 ? 57 OD1 ? A ASP 151 ? A ASP 611 ? 1_555 CA ? G CA . ? A CA 710 ? 1_555 OD2 ? A ASP 153 ? A ASP 613 ? 1_555 74.2 ? 58 OD2 ? A ASP 151 ? A ASP 611 ? 1_555 CA ? G CA . ? A CA 710 ? 1_555 OD2 ? A ASP 153 ? A ASP 613 ? 1_555 122.3 ? 59 OD1 ? A ASN 114 ? A ASN 574 ? 1_555 CA ? G CA . ? A CA 710 ? 1_555 O ? A ASN 157 ? A ASN 617 ? 1_555 103.4 ? 60 O ? A HIS 116 ? A HIS 576 ? 1_555 CA ? G CA . ? A CA 710 ? 1_555 O ? A ASN 157 ? A ASN 617 ? 1_555 160.6 ? 61 OD1 ? A ASP 151 ? A ASP 611 ? 1_555 CA ? G CA . ? A CA 710 ? 1_555 O ? A ASN 157 ? A ASN 617 ? 1_555 73.5 ? 62 OD2 ? A ASP 151 ? A ASP 611 ? 1_555 CA ? G CA . ? A CA 710 ? 1_555 O ? A ASN 157 ? A ASN 617 ? 1_555 76.2 ? 63 OD2 ? A ASP 153 ? A ASP 613 ? 1_555 CA ? G CA . ? A CA 710 ? 1_555 O ? A ASN 157 ? A ASN 617 ? 1_555 100.6 ? 64 OD1 ? A ASN 114 ? A ASN 574 ? 1_555 CA ? G CA . ? A CA 710 ? 1_555 OD2 ? A ASP 205 ? A ASP 665 ? 1_555 81.3 ? 65 O ? A HIS 116 ? A HIS 576 ? 1_555 CA ? G CA . ? A CA 710 ? 1_555 OD2 ? A ASP 205 ? A ASP 665 ? 1_555 108.2 ? 66 OD1 ? A ASP 151 ? A ASP 611 ? 1_555 CA ? G CA . ? A CA 710 ? 1_555 OD2 ? A ASP 205 ? A ASP 665 ? 1_555 138.4 ? 67 OD2 ? A ASP 151 ? A ASP 611 ? 1_555 CA ? G CA . ? A CA 710 ? 1_555 OD2 ? A ASP 205 ? A ASP 665 ? 1_555 91.8 ? 68 OD2 ? A ASP 153 ? A ASP 613 ? 1_555 CA ? G CA . ? A CA 710 ? 1_555 OD2 ? A ASP 205 ? A ASP 665 ? 1_555 145.7 ? 69 O ? A ASN 157 ? A ASN 617 ? 1_555 CA ? G CA . ? A CA 710 ? 1_555 OD2 ? A ASP 205 ? A ASP 665 ? 1_555 84.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-03-11 2 'Structure model' 2 0 2020-07-29 3 'Structure model' 2 1 2023-10-11 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Data collection' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Structure summary' 5 3 'Structure model' 'Data collection' 6 3 'Structure model' 'Database references' 7 3 'Structure model' 'Derived calculations' 8 3 'Structure model' 'Refinement description' 9 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' chem_comp 3 2 'Structure model' entity 4 2 'Structure model' pdbx_branch_scheme 5 2 'Structure model' pdbx_chem_comp_identifier 6 2 'Structure model' pdbx_entity_branch 7 2 'Structure model' pdbx_entity_branch_descriptor 8 2 'Structure model' pdbx_entity_branch_link 9 2 'Structure model' pdbx_entity_branch_list 10 2 'Structure model' pdbx_entity_nonpoly 11 2 'Structure model' pdbx_nonpoly_scheme 12 2 'Structure model' pdbx_struct_assembly_gen 13 2 'Structure model' pdbx_struct_conn_angle 14 2 'Structure model' struct_asym 15 2 'Structure model' struct_conn 16 2 'Structure model' struct_conn_type 17 2 'Structure model' struct_site 18 2 'Structure model' struct_site_gen 19 3 'Structure model' chem_comp 20 3 'Structure model' chem_comp_atom 21 3 'Structure model' chem_comp_bond 22 3 'Structure model' database_2 23 3 'Structure model' pdbx_initial_refinement_model 24 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site.B_iso_or_equiv' 2 2 'Structure model' '_atom_site.Cartn_x' 3 2 'Structure model' '_atom_site.Cartn_y' 4 2 'Structure model' '_atom_site.Cartn_z' 5 2 'Structure model' '_atom_site.auth_asym_id' 6 2 'Structure model' '_atom_site.auth_atom_id' 7 2 'Structure model' '_atom_site.auth_comp_id' 8 2 'Structure model' '_atom_site.auth_seq_id' 9 2 'Structure model' '_atom_site.label_asym_id' 10 2 'Structure model' '_atom_site.label_atom_id' 11 2 'Structure model' '_atom_site.label_comp_id' 12 2 'Structure model' '_atom_site.label_entity_id' 13 2 'Structure model' '_atom_site.type_symbol' 14 2 'Structure model' '_chem_comp.name' 15 2 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 16 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 17 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 18 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 19 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 20 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 21 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 22 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 23 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 24 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 25 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 26 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 27 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 28 2 'Structure model' '_pdbx_struct_conn_angle.value' 29 2 'Structure model' '_struct_conn.conn_type_id' 30 2 'Structure model' '_struct_conn.id' 31 2 'Structure model' '_struct_conn.pdbx_dist_value' 32 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 33 2 'Structure model' '_struct_conn.pdbx_role' 34 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 35 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 36 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 37 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 38 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 39 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 40 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 41 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 42 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 43 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 44 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 45 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 46 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 47 2 'Structure model' '_struct_conn_type.id' 48 3 'Structure model' '_chem_comp.pdbx_synonyms' 49 3 'Structure model' '_database_2.pdbx_DOI' 50 3 'Structure model' '_database_2.pdbx_database_accession' 51 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -x,y+1/2,-z # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 9.27275692201 -33.9484311424 59.6912151968 0.319638595364 ? 0.0346918575002 ? -0.00289523417198 ? 0.230257912995 ? 0.0074425303064 ? 0.296835802362 ? 3.27730792664 ? -0.243828485968 ? 0.984950532575 ? 0.83007314432 ? -0.845212291155 ? 2.10629301225 ? -0.0303754236724 ? -0.11282018889 ? 0.0840483974304 ? 0.038376489744 ? -0.0382004313467 ? -0.136391921616 ? -0.0349948716936 ? -0.0279734901356 ? 0.00525645451323 ? 2 'X-RAY DIFFRACTION' ? refined -7.26952412767 -19.8709381056 15.0731949707 0.373447156196 ? 0.0524165517648 ? -0.00913402076011 ? 0.401668197724 ? -0.0141736353936 ? 0.326106436976 ? 3.0410515823 ? -0.0868841614954 ? 0.0365617399183 ? 2.00692620044 ? -0.960502038382 ? 3.25666371336 ? 0.0931222248773 ? 0.614659128678 ? 0.236037113826 ? -0.294643865118 ? -0.144434751172 ? 0.104082004521 ? -0.0773196701411 ? 0.0868406610847 ? -0.00066981270034 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? ? ? ? 'chain A and resid 461:571' 2 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? ? ? ? 'chain A and resid 572:682' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.10.1_2155 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_entry_details.entry_id 6VFV _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ALA _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 488 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -168.31 _pdbx_validate_torsion.psi -166.13 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 683 ? A ALA 223 2 1 Y 1 A HIS 684 ? A HIS 224 3 1 Y 1 A HIS 685 ? A HIS 225 4 1 Y 1 A HIS 686 ? A HIS 226 5 1 Y 1 A HIS 687 ? A HIS 227 6 1 Y 1 A HIS 688 ? A HIS 228 7 1 Y 1 A HIS 689 ? A HIS 229 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BMA C1 C N R 74 BMA C2 C N S 75 BMA C3 C N S 76 BMA C4 C N S 77 BMA C5 C N R 78 BMA C6 C N N 79 BMA O1 O N N 80 BMA O2 O N N 81 BMA O3 O N N 82 BMA O4 O N N 83 BMA O5 O N N 84 BMA O6 O N N 85 BMA H1 H N N 86 BMA H2 H N N 87 BMA H3 H N N 88 BMA H4 H N N 89 BMA H5 H N N 90 BMA H61 H N N 91 BMA H62 H N N 92 BMA HO1 H N N 93 BMA HO2 H N N 94 BMA HO3 H N N 95 BMA HO4 H N N 96 BMA HO6 H N N 97 CA CA CA N N 98 CL CL CL N N 99 EDO C1 C N N 100 EDO O1 O N N 101 EDO C2 C N N 102 EDO O2 O N N 103 EDO H11 H N N 104 EDO H12 H N N 105 EDO HO1 H N N 106 EDO H21 H N N 107 EDO H22 H N N 108 EDO HO2 H N N 109 FUC C1 C N R 110 FUC C2 C N S 111 FUC C3 C N R 112 FUC C4 C N S 113 FUC C5 C N S 114 FUC C6 C N N 115 FUC O1 O N N 116 FUC O2 O N N 117 FUC O3 O N N 118 FUC O4 O N N 119 FUC O5 O N N 120 FUC H1 H N N 121 FUC H2 H N N 122 FUC H3 H N N 123 FUC H4 H N N 124 FUC H5 H N N 125 FUC H61 H N N 126 FUC H62 H N N 127 FUC H63 H N N 128 FUC HO1 H N N 129 FUC HO2 H N N 130 FUC HO3 H N N 131 FUC HO4 H N N 132 GLN N N N N 133 GLN CA C N S 134 GLN C C N N 135 GLN O O N N 136 GLN CB C N N 137 GLN CG C N N 138 GLN CD C N N 139 GLN OE1 O N N 140 GLN NE2 N N N 141 GLN OXT O N N 142 GLN H H N N 143 GLN H2 H N N 144 GLN HA H N N 145 GLN HB2 H N N 146 GLN HB3 H N N 147 GLN HG2 H N N 148 GLN HG3 H N N 149 GLN HE21 H N N 150 GLN HE22 H N N 151 GLN HXT H N N 152 GLU N N N N 153 GLU CA C N S 154 GLU C C N N 155 GLU O O N N 156 GLU CB C N N 157 GLU CG C N N 158 GLU CD C N N 159 GLU OE1 O N N 160 GLU OE2 O N N 161 GLU OXT O N N 162 GLU H H N N 163 GLU H2 H N N 164 GLU HA H N N 165 GLU HB2 H N N 166 GLU HB3 H N N 167 GLU HG2 H N N 168 GLU HG3 H N N 169 GLU HE2 H N N 170 GLU HXT H N N 171 GLY N N N N 172 GLY CA C N N 173 GLY C C N N 174 GLY O O N N 175 GLY OXT O N N 176 GLY H H N N 177 GLY H2 H N N 178 GLY HA2 H N N 179 GLY HA3 H N N 180 GLY HXT H N N 181 HIS N N N N 182 HIS CA C N S 183 HIS C C N N 184 HIS O O N N 185 HIS CB C N N 186 HIS CG C Y N 187 HIS ND1 N Y N 188 HIS CD2 C Y N 189 HIS CE1 C Y N 190 HIS NE2 N Y N 191 HIS OXT O N N 192 HIS H H N N 193 HIS H2 H N N 194 HIS HA H N N 195 HIS HB2 H N N 196 HIS HB3 H N N 197 HIS HD1 H N N 198 HIS HD2 H N N 199 HIS HE1 H N N 200 HIS HE2 H N N 201 HIS HXT H N N 202 HOH O O N N 203 HOH H1 H N N 204 HOH H2 H N N 205 ILE N N N N 206 ILE CA C N S 207 ILE C C N N 208 ILE O O N N 209 ILE CB C N S 210 ILE CG1 C N N 211 ILE CG2 C N N 212 ILE CD1 C N N 213 ILE OXT O N N 214 ILE H H N N 215 ILE H2 H N N 216 ILE HA H N N 217 ILE HB H N N 218 ILE HG12 H N N 219 ILE HG13 H N N 220 ILE HG21 H N N 221 ILE HG22 H N N 222 ILE HG23 H N N 223 ILE HD11 H N N 224 ILE HD12 H N N 225 ILE HD13 H N N 226 ILE HXT H N N 227 LEU N N N N 228 LEU CA C N S 229 LEU C C N N 230 LEU O O N N 231 LEU CB C N N 232 LEU CG C N N 233 LEU CD1 C N N 234 LEU CD2 C N N 235 LEU OXT O N N 236 LEU H H N N 237 LEU H2 H N N 238 LEU HA H N N 239 LEU HB2 H N N 240 LEU HB3 H N N 241 LEU HG H N N 242 LEU HD11 H N N 243 LEU HD12 H N N 244 LEU HD13 H N N 245 LEU HD21 H N N 246 LEU HD22 H N N 247 LEU HD23 H N N 248 LEU HXT H N N 249 LYS N N N N 250 LYS CA C N S 251 LYS C C N N 252 LYS O O N N 253 LYS CB C N N 254 LYS CG C N N 255 LYS CD C N N 256 LYS CE C N N 257 LYS NZ N N N 258 LYS OXT O N N 259 LYS H H N N 260 LYS H2 H N N 261 LYS HA H N N 262 LYS HB2 H N N 263 LYS HB3 H N N 264 LYS HG2 H N N 265 LYS HG3 H N N 266 LYS HD2 H N N 267 LYS HD3 H N N 268 LYS HE2 H N N 269 LYS HE3 H N N 270 LYS HZ1 H N N 271 LYS HZ2 H N N 272 LYS HZ3 H N N 273 LYS HXT H N N 274 MAN C1 C N S 275 MAN C2 C N S 276 MAN C3 C N S 277 MAN C4 C N S 278 MAN C5 C N R 279 MAN C6 C N N 280 MAN O1 O N N 281 MAN O2 O N N 282 MAN O3 O N N 283 MAN O4 O N N 284 MAN O5 O N N 285 MAN O6 O N N 286 MAN H1 H N N 287 MAN H2 H N N 288 MAN H3 H N N 289 MAN H4 H N N 290 MAN H5 H N N 291 MAN H61 H N N 292 MAN H62 H N N 293 MAN HO1 H N N 294 MAN HO2 H N N 295 MAN HO3 H N N 296 MAN HO4 H N N 297 MAN HO6 H N N 298 NAG C1 C N R 299 NAG C2 C N R 300 NAG C3 C N R 301 NAG C4 C N S 302 NAG C5 C N R 303 NAG C6 C N N 304 NAG C7 C N N 305 NAG C8 C N N 306 NAG N2 N N N 307 NAG O1 O N N 308 NAG O3 O N N 309 NAG O4 O N N 310 NAG O5 O N N 311 NAG O6 O N N 312 NAG O7 O N N 313 NAG H1 H N N 314 NAG H2 H N N 315 NAG H3 H N N 316 NAG H4 H N N 317 NAG H5 H N N 318 NAG H61 H N N 319 NAG H62 H N N 320 NAG H81 H N N 321 NAG H82 H N N 322 NAG H83 H N N 323 NAG HN2 H N N 324 NAG HO1 H N N 325 NAG HO3 H N N 326 NAG HO4 H N N 327 NAG HO6 H N N 328 PHE N N N N 329 PHE CA C N S 330 PHE C C N N 331 PHE O O N N 332 PHE CB C N N 333 PHE CG C Y N 334 PHE CD1 C Y N 335 PHE CD2 C Y N 336 PHE CE1 C Y N 337 PHE CE2 C Y N 338 PHE CZ C Y N 339 PHE OXT O N N 340 PHE H H N N 341 PHE H2 H N N 342 PHE HA H N N 343 PHE HB2 H N N 344 PHE HB3 H N N 345 PHE HD1 H N N 346 PHE HD2 H N N 347 PHE HE1 H N N 348 PHE HE2 H N N 349 PHE HZ H N N 350 PHE HXT H N N 351 PRO N N N N 352 PRO CA C N S 353 PRO C C N N 354 PRO O O N N 355 PRO CB C N N 356 PRO CG C N N 357 PRO CD C N N 358 PRO OXT O N N 359 PRO H H N N 360 PRO HA H N N 361 PRO HB2 H N N 362 PRO HB3 H N N 363 PRO HG2 H N N 364 PRO HG3 H N N 365 PRO HD2 H N N 366 PRO HD3 H N N 367 PRO HXT H N N 368 SER N N N N 369 SER CA C N S 370 SER C C N N 371 SER O O N N 372 SER CB C N N 373 SER OG O N N 374 SER OXT O N N 375 SER H H N N 376 SER H2 H N N 377 SER HA H N N 378 SER HB2 H N N 379 SER HB3 H N N 380 SER HG H N N 381 SER HXT H N N 382 THR N N N N 383 THR CA C N S 384 THR C C N N 385 THR O O N N 386 THR CB C N R 387 THR OG1 O N N 388 THR CG2 C N N 389 THR OXT O N N 390 THR H H N N 391 THR H2 H N N 392 THR HA H N N 393 THR HB H N N 394 THR HG1 H N N 395 THR HG21 H N N 396 THR HG22 H N N 397 THR HG23 H N N 398 THR HXT H N N 399 TYR N N N N 400 TYR CA C N S 401 TYR C C N N 402 TYR O O N N 403 TYR CB C N N 404 TYR CG C Y N 405 TYR CD1 C Y N 406 TYR CD2 C Y N 407 TYR CE1 C Y N 408 TYR CE2 C Y N 409 TYR CZ C Y N 410 TYR OH O N N 411 TYR OXT O N N 412 TYR H H N N 413 TYR H2 H N N 414 TYR HA H N N 415 TYR HB2 H N N 416 TYR HB3 H N N 417 TYR HD1 H N N 418 TYR HD2 H N N 419 TYR HE1 H N N 420 TYR HE2 H N N 421 TYR HH H N N 422 TYR HXT H N N 423 VAL N N N N 424 VAL CA C N S 425 VAL C C N N 426 VAL O O N N 427 VAL CB C N N 428 VAL CG1 C N N 429 VAL CG2 C N N 430 VAL OXT O N N 431 VAL H H N N 432 VAL H2 H N N 433 VAL HA H N N 434 VAL HB H N N 435 VAL HG11 H N N 436 VAL HG12 H N N 437 VAL HG13 H N N 438 VAL HG21 H N N 439 VAL HG22 H N N 440 VAL HG23 H N N 441 VAL HXT H N N 442 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BMA C1 C2 sing N N 70 BMA C1 O1 sing N N 71 BMA C1 O5 sing N N 72 BMA C1 H1 sing N N 73 BMA C2 C3 sing N N 74 BMA C2 O2 sing N N 75 BMA C2 H2 sing N N 76 BMA C3 C4 sing N N 77 BMA C3 O3 sing N N 78 BMA C3 H3 sing N N 79 BMA C4 C5 sing N N 80 BMA C4 O4 sing N N 81 BMA C4 H4 sing N N 82 BMA C5 C6 sing N N 83 BMA C5 O5 sing N N 84 BMA C5 H5 sing N N 85 BMA C6 O6 sing N N 86 BMA C6 H61 sing N N 87 BMA C6 H62 sing N N 88 BMA O1 HO1 sing N N 89 BMA O2 HO2 sing N N 90 BMA O3 HO3 sing N N 91 BMA O4 HO4 sing N N 92 BMA O6 HO6 sing N N 93 EDO C1 O1 sing N N 94 EDO C1 C2 sing N N 95 EDO C1 H11 sing N N 96 EDO C1 H12 sing N N 97 EDO O1 HO1 sing N N 98 EDO C2 O2 sing N N 99 EDO C2 H21 sing N N 100 EDO C2 H22 sing N N 101 EDO O2 HO2 sing N N 102 FUC C1 C2 sing N N 103 FUC C1 O1 sing N N 104 FUC C1 O5 sing N N 105 FUC C1 H1 sing N N 106 FUC C2 C3 sing N N 107 FUC C2 O2 sing N N 108 FUC C2 H2 sing N N 109 FUC C3 C4 sing N N 110 FUC C3 O3 sing N N 111 FUC C3 H3 sing N N 112 FUC C4 C5 sing N N 113 FUC C4 O4 sing N N 114 FUC C4 H4 sing N N 115 FUC C5 C6 sing N N 116 FUC C5 O5 sing N N 117 FUC C5 H5 sing N N 118 FUC C6 H61 sing N N 119 FUC C6 H62 sing N N 120 FUC C6 H63 sing N N 121 FUC O1 HO1 sing N N 122 FUC O2 HO2 sing N N 123 FUC O3 HO3 sing N N 124 FUC O4 HO4 sing N N 125 GLN N CA sing N N 126 GLN N H sing N N 127 GLN N H2 sing N N 128 GLN CA C sing N N 129 GLN CA CB sing N N 130 GLN CA HA sing N N 131 GLN C O doub N N 132 GLN C OXT sing N N 133 GLN CB CG sing N N 134 GLN CB HB2 sing N N 135 GLN CB HB3 sing N N 136 GLN CG CD sing N N 137 GLN CG HG2 sing N N 138 GLN CG HG3 sing N N 139 GLN CD OE1 doub N N 140 GLN CD NE2 sing N N 141 GLN NE2 HE21 sing N N 142 GLN NE2 HE22 sing N N 143 GLN OXT HXT sing N N 144 GLU N CA sing N N 145 GLU N H sing N N 146 GLU N H2 sing N N 147 GLU CA C sing N N 148 GLU CA CB sing N N 149 GLU CA HA sing N N 150 GLU C O doub N N 151 GLU C OXT sing N N 152 GLU CB CG sing N N 153 GLU CB HB2 sing N N 154 GLU CB HB3 sing N N 155 GLU CG CD sing N N 156 GLU CG HG2 sing N N 157 GLU CG HG3 sing N N 158 GLU CD OE1 doub N N 159 GLU CD OE2 sing N N 160 GLU OE2 HE2 sing N N 161 GLU OXT HXT sing N N 162 GLY N CA sing N N 163 GLY N H sing N N 164 GLY N H2 sing N N 165 GLY CA C sing N N 166 GLY CA HA2 sing N N 167 GLY CA HA3 sing N N 168 GLY C O doub N N 169 GLY C OXT sing N N 170 GLY OXT HXT sing N N 171 HIS N CA sing N N 172 HIS N H sing N N 173 HIS N H2 sing N N 174 HIS CA C sing N N 175 HIS CA CB sing N N 176 HIS CA HA sing N N 177 HIS C O doub N N 178 HIS C OXT sing N N 179 HIS CB CG sing N N 180 HIS CB HB2 sing N N 181 HIS CB HB3 sing N N 182 HIS CG ND1 sing Y N 183 HIS CG CD2 doub Y N 184 HIS ND1 CE1 doub Y N 185 HIS ND1 HD1 sing N N 186 HIS CD2 NE2 sing Y N 187 HIS CD2 HD2 sing N N 188 HIS CE1 NE2 sing Y N 189 HIS CE1 HE1 sing N N 190 HIS NE2 HE2 sing N N 191 HIS OXT HXT sing N N 192 HOH O H1 sing N N 193 HOH O H2 sing N N 194 ILE N CA sing N N 195 ILE N H sing N N 196 ILE N H2 sing N N 197 ILE CA C sing N N 198 ILE CA CB sing N N 199 ILE CA HA sing N N 200 ILE C O doub N N 201 ILE C OXT sing N N 202 ILE CB CG1 sing N N 203 ILE CB CG2 sing N N 204 ILE CB HB sing N N 205 ILE CG1 CD1 sing N N 206 ILE CG1 HG12 sing N N 207 ILE CG1 HG13 sing N N 208 ILE CG2 HG21 sing N N 209 ILE CG2 HG22 sing N N 210 ILE CG2 HG23 sing N N 211 ILE CD1 HD11 sing N N 212 ILE CD1 HD12 sing N N 213 ILE CD1 HD13 sing N N 214 ILE OXT HXT sing N N 215 LEU N CA sing N N 216 LEU N H sing N N 217 LEU N H2 sing N N 218 LEU CA C sing N N 219 LEU CA CB sing N N 220 LEU CA HA sing N N 221 LEU C O doub N N 222 LEU C OXT sing N N 223 LEU CB CG sing N N 224 LEU CB HB2 sing N N 225 LEU CB HB3 sing N N 226 LEU CG CD1 sing N N 227 LEU CG CD2 sing N N 228 LEU CG HG sing N N 229 LEU CD1 HD11 sing N N 230 LEU CD1 HD12 sing N N 231 LEU CD1 HD13 sing N N 232 LEU CD2 HD21 sing N N 233 LEU CD2 HD22 sing N N 234 LEU CD2 HD23 sing N N 235 LEU OXT HXT sing N N 236 LYS N CA sing N N 237 LYS N H sing N N 238 LYS N H2 sing N N 239 LYS CA C sing N N 240 LYS CA CB sing N N 241 LYS CA HA sing N N 242 LYS C O doub N N 243 LYS C OXT sing N N 244 LYS CB CG sing N N 245 LYS CB HB2 sing N N 246 LYS CB HB3 sing N N 247 LYS CG CD sing N N 248 LYS CG HG2 sing N N 249 LYS CG HG3 sing N N 250 LYS CD CE sing N N 251 LYS CD HD2 sing N N 252 LYS CD HD3 sing N N 253 LYS CE NZ sing N N 254 LYS CE HE2 sing N N 255 LYS CE HE3 sing N N 256 LYS NZ HZ1 sing N N 257 LYS NZ HZ2 sing N N 258 LYS NZ HZ3 sing N N 259 LYS OXT HXT sing N N 260 MAN C1 C2 sing N N 261 MAN C1 O1 sing N N 262 MAN C1 O5 sing N N 263 MAN C1 H1 sing N N 264 MAN C2 C3 sing N N 265 MAN C2 O2 sing N N 266 MAN C2 H2 sing N N 267 MAN C3 C4 sing N N 268 MAN C3 O3 sing N N 269 MAN C3 H3 sing N N 270 MAN C4 C5 sing N N 271 MAN C4 O4 sing N N 272 MAN C4 H4 sing N N 273 MAN C5 C6 sing N N 274 MAN C5 O5 sing N N 275 MAN C5 H5 sing N N 276 MAN C6 O6 sing N N 277 MAN C6 H61 sing N N 278 MAN C6 H62 sing N N 279 MAN O1 HO1 sing N N 280 MAN O2 HO2 sing N N 281 MAN O3 HO3 sing N N 282 MAN O4 HO4 sing N N 283 MAN O6 HO6 sing N N 284 NAG C1 C2 sing N N 285 NAG C1 O1 sing N N 286 NAG C1 O5 sing N N 287 NAG C1 H1 sing N N 288 NAG C2 C3 sing N N 289 NAG C2 N2 sing N N 290 NAG C2 H2 sing N N 291 NAG C3 C4 sing N N 292 NAG C3 O3 sing N N 293 NAG C3 H3 sing N N 294 NAG C4 C5 sing N N 295 NAG C4 O4 sing N N 296 NAG C4 H4 sing N N 297 NAG C5 C6 sing N N 298 NAG C5 O5 sing N N 299 NAG C5 H5 sing N N 300 NAG C6 O6 sing N N 301 NAG C6 H61 sing N N 302 NAG C6 H62 sing N N 303 NAG C7 C8 sing N N 304 NAG C7 N2 sing N N 305 NAG C7 O7 doub N N 306 NAG C8 H81 sing N N 307 NAG C8 H82 sing N N 308 NAG C8 H83 sing N N 309 NAG N2 HN2 sing N N 310 NAG O1 HO1 sing N N 311 NAG O3 HO3 sing N N 312 NAG O4 HO4 sing N N 313 NAG O6 HO6 sing N N 314 PHE N CA sing N N 315 PHE N H sing N N 316 PHE N H2 sing N N 317 PHE CA C sing N N 318 PHE CA CB sing N N 319 PHE CA HA sing N N 320 PHE C O doub N N 321 PHE C OXT sing N N 322 PHE CB CG sing N N 323 PHE CB HB2 sing N N 324 PHE CB HB3 sing N N 325 PHE CG CD1 doub Y N 326 PHE CG CD2 sing Y N 327 PHE CD1 CE1 sing Y N 328 PHE CD1 HD1 sing N N 329 PHE CD2 CE2 doub Y N 330 PHE CD2 HD2 sing N N 331 PHE CE1 CZ doub Y N 332 PHE CE1 HE1 sing N N 333 PHE CE2 CZ sing Y N 334 PHE CE2 HE2 sing N N 335 PHE CZ HZ sing N N 336 PHE OXT HXT sing N N 337 PRO N CA sing N N 338 PRO N CD sing N N 339 PRO N H sing N N 340 PRO CA C sing N N 341 PRO CA CB sing N N 342 PRO CA HA sing N N 343 PRO C O doub N N 344 PRO C OXT sing N N 345 PRO CB CG sing N N 346 PRO CB HB2 sing N N 347 PRO CB HB3 sing N N 348 PRO CG CD sing N N 349 PRO CG HG2 sing N N 350 PRO CG HG3 sing N N 351 PRO CD HD2 sing N N 352 PRO CD HD3 sing N N 353 PRO OXT HXT sing N N 354 SER N CA sing N N 355 SER N H sing N N 356 SER N H2 sing N N 357 SER CA C sing N N 358 SER CA CB sing N N 359 SER CA HA sing N N 360 SER C O doub N N 361 SER C OXT sing N N 362 SER CB OG sing N N 363 SER CB HB2 sing N N 364 SER CB HB3 sing N N 365 SER OG HG sing N N 366 SER OXT HXT sing N N 367 THR N CA sing N N 368 THR N H sing N N 369 THR N H2 sing N N 370 THR CA C sing N N 371 THR CA CB sing N N 372 THR CA HA sing N N 373 THR C O doub N N 374 THR C OXT sing N N 375 THR CB OG1 sing N N 376 THR CB CG2 sing N N 377 THR CB HB sing N N 378 THR OG1 HG1 sing N N 379 THR CG2 HG21 sing N N 380 THR CG2 HG22 sing N N 381 THR CG2 HG23 sing N N 382 THR OXT HXT sing N N 383 TYR N CA sing N N 384 TYR N H sing N N 385 TYR N H2 sing N N 386 TYR CA C sing N N 387 TYR CA CB sing N N 388 TYR CA HA sing N N 389 TYR C O doub N N 390 TYR C OXT sing N N 391 TYR CB CG sing N N 392 TYR CB HB2 sing N N 393 TYR CB HB3 sing N N 394 TYR CG CD1 doub Y N 395 TYR CG CD2 sing Y N 396 TYR CD1 CE1 sing Y N 397 TYR CD1 HD1 sing N N 398 TYR CD2 CE2 doub Y N 399 TYR CD2 HD2 sing N N 400 TYR CE1 CZ doub Y N 401 TYR CE1 HE1 sing N N 402 TYR CE2 CZ sing Y N 403 TYR CE2 HE2 sing N N 404 TYR CZ OH sing N N 405 TYR OH HH sing N N 406 TYR OXT HXT sing N N 407 VAL N CA sing N N 408 VAL N H sing N N 409 VAL N H2 sing N N 410 VAL CA C sing N N 411 VAL CA CB sing N N 412 VAL CA HA sing N N 413 VAL C O doub N N 414 VAL C OXT sing N N 415 VAL CB CG1 sing N N 416 VAL CB CG2 sing N N 417 VAL CB HB sing N N 418 VAL CG1 HG11 sing N N 419 VAL CG1 HG12 sing N N 420 VAL CG1 HG13 sing N N 421 VAL CG2 HG21 sing N N 422 VAL CG2 HG22 sing N N 423 VAL CG2 HG23 sing N N 424 VAL OXT HXT sing N N 425 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' R01MH114817 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' R01GM118584 2 'National Science Foundation (NSF, United States)' 'United States' MCB-1412472 3 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 A NAG 700 n B 2 NAG 2 B NAG 2 A NAG 701 n B 2 BMA 3 B BMA 3 A BMA 702 n B 2 MAN 4 B MAN 4 A MAN 705 n B 2 FUC 5 B FUC 5 A FUC 703 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'DManpa1-6DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-' 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/4,5,4/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5]/1-1-2-3-4/a4-b1_a6-e1_b4-c1_c6-d1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(6+1)][a-D-Manp]{}}}[(6+1)][a-L-Fucp]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 BMA C1 O1 2 NAG O4 HO4 sing ? 3 2 4 MAN C1 O1 3 BMA O6 HO6 sing ? 4 2 5 FUC C1 O1 1 NAG O6 HO6 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 BMA 3 n 2 MAN 4 n 2 FUC 5 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 alpha-D-mannopyranose MAN 4 'CALCIUM ION' CA 5 1,2-ETHANEDIOL EDO 6 'CHLORIDE ION' CL 7 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5SZR _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'equilibrium centrifugation' _pdbx_struct_assembly_auth_evidence.details 'sedimentation equilibrium AUC shows monomeric state' # _space_group.name_H-M_alt 'P 1 21 1' _space_group.name_Hall 'P 2yb' _space_group.IT_number 4 _space_group.crystal_system monoclinic _space_group.id 1 #