HEADER TRANSCRIPTION 07-JAN-20 6VGD TITLE CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN (DBD) OF HUMAN FLI1 AND TITLE 2 THE COMPLEX OF THE DBD OF HUMAN RUNX2 WITH CORE BINDING FACTOR BETA TITLE 3 (CBFB), IN COMPLEX WITH 16MER DNA CAGAGGATGTGGCTTC COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRIEND LEUKEMIA INTEGRATION 1 TRANSCRIPTION FACTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA BINDING DOMAIN; COMPND 5 SYNONYM: PROTO-ONCOGENE FLI-1,TRANSCRIPTION FACTOR ERGB; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: THE N-TERMINAL GPHM IS LEFT FROM THE AFFINITY TAG COMPND 8 AFTER ITS CLEAVAGE.; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'- COMPND 11 D(P*CP*AP*GP*AP*GP*GP*AP*TP*GP*TP*GP*GP*CP*TP*TP*C)-3'); COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: SYNTHETIC DNA; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: DNA (5'- COMPND 17 D(P*GP*AP*AP*GP*CP*CP*AP*CP*AP*TP*CP*CP*TP*CP*TP*G)-3'); COMPND 18 CHAIN: C; COMPND 19 ENGINEERED: YES; COMPND 20 OTHER_DETAILS: SYNTHETIC DNA; COMPND 21 MOL_ID: 4; COMPND 22 MOLECULE: RUNT-RELATED TRANSCRIPTION FACTOR 2; COMPND 23 CHAIN: D; COMPND 24 FRAGMENT: DNA BINDING DOMAIN; COMPND 25 SYNONYM: ACUTE MYELOID LEUKEMIA 3 PROTEIN,CORE-BINDING FACTOR SUBUNIT COMPND 26 ALPHA-1,CBF-ALPHA-1,ONCOGENE AML-3,OSTEOBLAST-SPECIFIC TRANSCRIPTION COMPND 27 FACTOR 2,OSF-2,POLYOMAVIRUS ENHANCER-BINDING PROTEIN 2 ALPHA A COMPND 28 SUBUNIT,PEBP2-ALPHA A,SL3-3 ENHANCER FACTOR 1 ALPHA A SUBUNIT,SL3/AKV COMPND 29 CORE-BINDING FACTOR ALPHA A SUBUNIT; COMPND 30 ENGINEERED: YES; COMPND 31 MOL_ID: 5; COMPND 32 MOLECULE: CORE-BINDING FACTOR SUBUNIT BETA; COMPND 33 CHAIN: G; COMPND 34 SYNONYM: CBF-BETA,POLYOMAVIRUS ENHANCER-BINDING PROTEIN 2 BETA COMPND 35 SUBUNIT,PEBP2-BETA,SL3-3 ENHANCER FACTOR 1 SUBUNIT BETA,SL3/AKV CORE- COMPND 36 BINDING FACTOR BETA SUBUNIT; COMPND 37 ENGINEERED: YES; COMPND 38 OTHER_DETAILS: THE N-TERMINAL REGION AGSSHHHHHHSQDP IS A CLONED COMPND 39 AFFINITY TAG. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FLI1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_COMMON: HUMAN; SOURCE 17 ORGANISM_TAXID: 9606; SOURCE 18 MOL_ID: 4; SOURCE 19 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 20 ORGANISM_COMMON: HUMAN; SOURCE 21 ORGANISM_TAXID: 9606; SOURCE 22 GENE: RUNX2, AML3, CBFA1, OSF2, PEBP2A; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 24 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 25 MOL_ID: 5; SOURCE 26 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 27 ORGANISM_COMMON: HUMAN; SOURCE 28 ORGANISM_TAXID: 9606; SOURCE 29 GENE: CBFB; SOURCE 30 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 31 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS EWING SARCOMA, ENHANCER, TRANSCRIPTION FACTOR, ONCOGENESIS, PROSTATE KEYWDS 2 CANCER, ETS-FAMILY, RUNT-FAMILY, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR C.HOU,O.V.TSODIKOV REVDAT 4 11-OCT-23 6VGD 1 REMARK REVDAT 3 19-MAY-21 6VGD 1 JRNL REVDAT 2 16-DEC-20 6VGD 1 JRNL REVDAT 1 25-NOV-20 6VGD 0 JRNL AUTH C.HOU,A.MANDAL,J.ROHR,O.V.TSODIKOV JRNL TITL ALLOSTERIC INTERFERENCE IN ONCOGENIC FLI1 AND ERG JRNL TITL 2 TRANSACTIONS BY MITHRAMYCINS. JRNL REF STRUCTURE V. 29 404 2021 JRNL REFN ISSN 0969-2126 JRNL PMID 33275876 JRNL DOI 10.1016/J.STR.2020.11.012 REMARK 2 REMARK 2 RESOLUTION. 4.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 7806 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.295 REMARK 3 R VALUE (WORKING SET) : 0.295 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 419 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 4.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 4.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 543 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.4950 REMARK 3 BIN FREE R VALUE SET COUNT : 23 REMARK 3 BIN FREE R VALUE : 0.4260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2703 REMARK 3 NUCLEIC ACID ATOMS : 656 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 285.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.54000 REMARK 3 B22 (A**2) : 2.54000 REMARK 3 B33 (A**2) : -8.23000 REMARK 3 B12 (A**2) : 1.27000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.823 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.936 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 187.362 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3494 ; 0.004 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2893 ; 0.002 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4848 ; 1.257 ; 1.544 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6712 ; 1.172 ; 1.763 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 330 ; 6.891 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 173 ;31.138 ;20.925 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 472 ;16.840 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;18.106 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 439 ; 0.051 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3488 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 805 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 275 A 372 REMARK 3 ORIGIN FOR THE GROUP (A): -40.9659 15.5076 -44.3270 REMARK 3 T TENSOR REMARK 3 T11: 0.9563 T22: 0.3056 REMARK 3 T33: 0.3432 T12: -0.4977 REMARK 3 T13: 0.0449 T23: -0.1362 REMARK 3 L TENSOR REMARK 3 L11: 4.6204 L22: 6.7537 REMARK 3 L33: 9.9152 L12: -2.4539 REMARK 3 L13: -0.7301 L23: -5.2962 REMARK 3 S TENSOR REMARK 3 S11: -0.1433 S12: 0.0013 S13: -0.1532 REMARK 3 S21: -0.1937 S22: 0.1187 S23: -0.1757 REMARK 3 S31: 0.2917 S32: 0.0950 S33: 0.0246 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 16 REMARK 3 ORIGIN FOR THE GROUP (A): -39.3306 22.5731 -30.5684 REMARK 3 T TENSOR REMARK 3 T11: 1.4356 T22: 1.3741 REMARK 3 T33: 0.4625 T12: -0.0921 REMARK 3 T13: -0.1009 T23: -0.3426 REMARK 3 L TENSOR REMARK 3 L11: 2.1082 L22: 2.3327 REMARK 3 L33: 2.5465 L12: -1.3177 REMARK 3 L13: 0.1779 L23: 1.7492 REMARK 3 S TENSOR REMARK 3 S11: -0.0467 S12: 0.4895 S13: -0.1448 REMARK 3 S21: 0.8313 S22: 0.8045 S23: -0.4596 REMARK 3 S31: 0.8447 S32: 1.1124 S33: -0.7578 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 17 REMARK 3 ORIGIN FOR THE GROUP (A): -39.4861 22.6252 -28.5090 REMARK 3 T TENSOR REMARK 3 T11: 0.9129 T22: 0.4965 REMARK 3 T33: 0.4374 T12: -0.4682 REMARK 3 T13: -0.1254 T23: 0.0498 REMARK 3 L TENSOR REMARK 3 L11: 0.5134 L22: 10.5280 REMARK 3 L33: 5.7449 L12: -0.1060 REMARK 3 L13: -1.6287 L23: -0.1965 REMARK 3 S TENSOR REMARK 3 S11: 0.0175 S12: 0.1228 S13: -0.0064 REMARK 3 S21: 0.3978 S22: 0.4361 S23: -0.3863 REMARK 3 S31: -0.1373 S32: -0.5162 S33: -0.4536 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 60 D 176 REMARK 3 ORIGIN FOR THE GROUP (A): -51.4311 39.9666 -15.2561 REMARK 3 T TENSOR REMARK 3 T11: 1.2626 T22: 0.9866 REMARK 3 T33: 0.4891 T12: -0.1600 REMARK 3 T13: -0.1029 T23: 0.0543 REMARK 3 L TENSOR REMARK 3 L11: 8.1130 L22: 4.4551 REMARK 3 L33: 6.2216 L12: -2.0424 REMARK 3 L13: -5.1357 L23: 3.8525 REMARK 3 S TENSOR REMARK 3 S11: -0.2047 S12: 0.3150 S13: 0.2860 REMARK 3 S21: 0.0953 S22: -0.1617 S23: 0.3369 REMARK 3 S31: -0.3172 S32: -1.1647 S33: 0.3665 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 2 G 139 REMARK 3 ORIGIN FOR THE GROUP (A): -62.9368 54.9320 -23.5378 REMARK 3 T TENSOR REMARK 3 T11: 2.3523 T22: 2.0237 REMARK 3 T33: 2.0736 T12: 0.0723 REMARK 3 T13: -0.2021 T23: 0.2336 REMARK 3 L TENSOR REMARK 3 L11: 4.9658 L22: 0.9980 REMARK 3 L33: 1.9624 L12: -1.3046 REMARK 3 L13: -2.3286 L23: 0.3663 REMARK 3 S TENSOR REMARK 3 S11: 0.0861 S12: 1.3425 S13: 0.3949 REMARK 3 S21: -0.0350 S22: -0.1387 S23: 0.8933 REMARK 3 S31: -0.7475 S32: -0.5444 S33: 0.0527 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6VGD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246341. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17612 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.95400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6VG8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.6 M K/NA TARTRATE, 0.1 M HEPES, REMARK 280 PH7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 214.69333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 107.34667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 214.69333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 107.34667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 214.69333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 107.34667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 214.69333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 107.34667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 272 REMARK 465 PRO A 273 REMARK 465 HIS A 274 REMARK 465 PRO A 373 REMARK 465 THR A 374 REMARK 465 GLU A 375 REMARK 465 ARG D 228 REMARK 465 ARG D 229 REMARK 465 HIS D 230 REMARK 465 ARG D 231 REMARK 465 GLN D 232 REMARK 465 LYS D 233 REMARK 465 LEU D 234 REMARK 465 ASP D 235 REMARK 465 ASP D 236 REMARK 465 SER D 237 REMARK 465 LYS D 238 REMARK 465 PRO D 239 REMARK 465 SER D 240 REMARK 465 LEU D 241 REMARK 465 PHE D 242 REMARK 465 SER D 243 REMARK 465 ASP D 244 REMARK 465 ARG D 245 REMARK 465 LEU D 246 REMARK 465 SER D 247 REMARK 465 ASP D 248 REMARK 465 LEU D 249 REMARK 465 GLY D 250 REMARK 465 ARG D 251 REMARK 465 ILE D 252 REMARK 465 PRO D 253 REMARK 465 HIS D 254 REMARK 465 PRO D 255 REMARK 465 SER D 256 REMARK 465 MET D 257 REMARK 465 ARG D 258 REMARK 465 VAL D 259 REMARK 465 GLY D 260 REMARK 465 VAL D 261 REMARK 465 PRO D 262 REMARK 465 PRO D 263 REMARK 465 GLN D 264 REMARK 465 ASN D 265 REMARK 465 PRO D 266 REMARK 465 ARG D 267 REMARK 465 PRO D 268 REMARK 465 SER D 269 REMARK 465 LEU D 270 REMARK 465 ASN D 271 REMARK 465 SER D 272 REMARK 465 ALA D 273 REMARK 465 PRO D 274 REMARK 465 SER D 275 REMARK 465 PRO D 276 REMARK 465 PHE D 277 REMARK 465 ASN D 278 REMARK 465 PRO D 279 REMARK 465 GLN D 280 REMARK 465 GLY D 281 REMARK 465 GLN D 282 REMARK 465 SER D 283 REMARK 465 GLN D 284 REMARK 465 ILE D 285 REMARK 465 THR D 286 REMARK 465 ASP D 287 REMARK 465 MET G -13 REMARK 465 GLY G -12 REMARK 465 SER G -11 REMARK 465 SER G -10 REMARK 465 HIS G -9 REMARK 465 HIS G -8 REMARK 465 HIS G -7 REMARK 465 HIS G -6 REMARK 465 HIS G -5 REMARK 465 HIS G -4 REMARK 465 SER G -3 REMARK 465 GLN G -2 REMARK 465 ASP G -1 REMARK 465 PRO G 0 REMARK 465 MET G 1 REMARK 465 ALA G 71 REMARK 465 SER G 72 REMARK 465 TRP G 73 REMARK 465 GLN G 74 REMARK 465 GLY G 75 REMARK 465 GLU G 76 REMARK 465 GLN G 77 REMARK 465 ARG G 78 REMARK 465 GLN G 79 REMARK 465 THR G 80 REMARK 465 LEU G 97 REMARK 465 LYS G 98 REMARK 465 ALA G 99 REMARK 465 PRO G 100 REMARK 465 TRP G 110 REMARK 465 LYS G 111 REMARK 465 GLY G 112 REMARK 465 GLN G 140 REMARK 465 GLN G 141 REMARK 465 ALA G 142 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 303 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 276 4.84 -64.40 REMARK 500 THR A 301 146.37 -171.03 REMARK 500 THR A 312 -81.69 -76.25 REMARK 500 VAL A 317 -72.03 -46.80 REMARK 500 TYR A 356 53.12 72.54 REMARK 500 TYR A 358 -169.68 -119.81 REMARK 500 HIS A 363 -9.03 -52.85 REMARK 500 ARG D 115 174.93 -56.39 REMARK 500 ASN D 133 81.69 62.11 REMARK 500 THR D 135 99.87 -45.83 REMARK 500 ALA D 139 166.35 -49.01 REMARK 500 ASP D 150 100.23 -57.37 REMARK 500 ASP D 161 -36.96 -37.04 REMARK 500 ASN D 163 80.22 41.25 REMARK 500 VAL D 188 -61.95 -104.98 REMARK 500 PRO D 224 89.42 -63.49 REMARK 500 ASN G 14 -32.60 -142.21 REMARK 500 SER G 53 176.63 179.12 REMARK 500 SER G 82 -156.82 -145.16 REMARK 500 ARG G 83 -62.02 -141.20 REMARK 500 LEU G 138 38.39 -76.37 REMARK 500 REMARK 500 REMARK: NULL DBREF 6VGD A 276 375 UNP Q01543 FLI1_HUMAN 276 375 DBREF 6VGD B 1 16 PDB 6VGD 6VGD 1 16 DBREF 6VGD C 2 17 PDB 6VGD 6VGD 2 17 DBREF 6VGD D 111 287 UNP Q13950 RUNX2_HUMAN 111 287 DBREF 6VGD G 1 142 UNP Q13951 PEBB_HUMAN 1 142 SEQADV 6VGD GLY A 272 UNP Q01543 EXPRESSION TAG SEQADV 6VGD PRO A 273 UNP Q01543 EXPRESSION TAG SEQADV 6VGD HIS A 274 UNP Q01543 EXPRESSION TAG SEQADV 6VGD MET A 275 UNP Q01543 EXPRESSION TAG SEQADV 6VGD MET G -13 UNP Q13951 INITIATING METHIONINE SEQADV 6VGD GLY G -12 UNP Q13951 EXPRESSION TAG SEQADV 6VGD SER G -11 UNP Q13951 EXPRESSION TAG SEQADV 6VGD SER G -10 UNP Q13951 EXPRESSION TAG SEQADV 6VGD HIS G -9 UNP Q13951 EXPRESSION TAG SEQADV 6VGD HIS G -8 UNP Q13951 EXPRESSION TAG SEQADV 6VGD HIS G -7 UNP Q13951 EXPRESSION TAG SEQADV 6VGD HIS G -6 UNP Q13951 EXPRESSION TAG SEQADV 6VGD HIS G -5 UNP Q13951 EXPRESSION TAG SEQADV 6VGD HIS G -4 UNP Q13951 EXPRESSION TAG SEQADV 6VGD SER G -3 UNP Q13951 EXPRESSION TAG SEQADV 6VGD GLN G -2 UNP Q13951 EXPRESSION TAG SEQADV 6VGD ASP G -1 UNP Q13951 EXPRESSION TAG SEQADV 6VGD PRO G 0 UNP Q13951 EXPRESSION TAG SEQRES 1 A 104 GLY PRO HIS MET PRO GLY SER GLY GLN ILE GLN LEU TRP SEQRES 2 A 104 GLN PHE LEU LEU GLU LEU LEU SER ASP SER ALA ASN ALA SEQRES 3 A 104 SER CYS ILE THR TRP GLU GLY THR ASN GLY GLU PHE LYS SEQRES 4 A 104 MET THR ASP PRO ASP GLU VAL ALA ARG ARG TRP GLY GLU SEQRES 5 A 104 ARG LYS SER LYS PRO ASN MET ASN TYR ASP LYS LEU SER SEQRES 6 A 104 ARG ALA LEU ARG TYR TYR TYR ASP LYS ASN ILE MET THR SEQRES 7 A 104 LYS VAL HIS GLY LYS ARG TYR ALA TYR LYS PHE ASP PHE SEQRES 8 A 104 HIS GLY ILE ALA GLN ALA LEU GLN PRO HIS PRO THR GLU SEQRES 1 B 16 DC DA DG DA DG DG DA DT DG DT DG DG DC SEQRES 2 B 16 DT DT DC SEQRES 1 C 16 DG DA DA DG DC DC DA DC DA DT DC DC DT SEQRES 2 C 16 DC DT DG SEQRES 1 D 177 ALA GLU LEU VAL ARG THR ASP SER PRO ASN PHE LEU CYS SEQRES 2 D 177 SER VAL LEU PRO SER HIS TRP ARG CYS ASN LYS THR LEU SEQRES 3 D 177 PRO VAL ALA PHE LYS VAL VAL ALA LEU GLY GLU VAL PRO SEQRES 4 D 177 ASP GLY THR VAL VAL THR VAL MET ALA GLY ASN ASP GLU SEQRES 5 D 177 ASN TYR SER ALA GLU LEU ARG ASN ALA SER ALA VAL MET SEQRES 6 D 177 LYS ASN GLN VAL ALA ARG PHE ASN ASP LEU ARG PHE VAL SEQRES 7 D 177 GLY ARG SER GLY ARG GLY LYS SER PHE THR LEU THR ILE SEQRES 8 D 177 THR VAL PHE THR ASN PRO PRO GLN VAL ALA THR TYR HIS SEQRES 9 D 177 ARG ALA ILE LYS VAL THR VAL ASP GLY PRO ARG GLU PRO SEQRES 10 D 177 ARG ARG HIS ARG GLN LYS LEU ASP ASP SER LYS PRO SER SEQRES 11 D 177 LEU PHE SER ASP ARG LEU SER ASP LEU GLY ARG ILE PRO SEQRES 12 D 177 HIS PRO SER MET ARG VAL GLY VAL PRO PRO GLN ASN PRO SEQRES 13 D 177 ARG PRO SER LEU ASN SER ALA PRO SER PRO PHE ASN PRO SEQRES 14 D 177 GLN GLY GLN SER GLN ILE THR ASP SEQRES 1 G 156 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 G 156 PRO MET PRO ARG VAL VAL PRO ASP GLN ARG SER LYS PHE SEQRES 3 G 156 GLU ASN GLU GLU PHE PHE ARG LYS LEU SER ARG GLU CYS SEQRES 4 G 156 GLU ILE LYS TYR THR GLY PHE ARG ASP ARG PRO HIS GLU SEQRES 5 G 156 GLU ARG GLN ALA ARG PHE GLN ASN ALA CYS ARG ASP GLY SEQRES 6 G 156 ARG SER GLU ILE ALA PHE VAL ALA THR GLY THR ASN LEU SEQRES 7 G 156 SER LEU GLN PHE PHE PRO ALA SER TRP GLN GLY GLU GLN SEQRES 8 G 156 ARG GLN THR PRO SER ARG GLU TYR VAL ASP LEU GLU ARG SEQRES 9 G 156 GLU ALA GLY LYS VAL TYR LEU LYS ALA PRO MET ILE LEU SEQRES 10 G 156 ASN GLY VAL CYS VAL ILE TRP LYS GLY TRP ILE ASP LEU SEQRES 11 G 156 GLN ARG LEU ASP GLY MET GLY CYS LEU GLU PHE ASP GLU SEQRES 12 G 156 GLU ARG ALA GLN GLN GLU ASP ALA LEU ALA GLN GLN ALA HELIX 1 AA1 LEU A 283 LEU A 288 1 6 HELIX 2 AA2 ASP A 293 ALA A 297 5 5 HELIX 3 AA3 ASP A 313 SER A 326 1 14 HELIX 4 AA4 ASN A 331 ASN A 346 1 16 HELIX 5 AA5 ASP G 7 GLU G 13 1 7 HELIX 6 AA6 GLU G 15 LYS G 20 1 6 HELIX 7 AA7 PRO G 36 GLY G 51 1 16 HELIX 8 AA8 ASP G 128 LEU G 138 1 11 SHEET 1 AA1 2 ILE A 300 TRP A 302 0 SHEET 2 AA1 2 PHE A 309 MET A 311 -1 O LYS A 310 N THR A 301 SHEET 1 AA2 2 MET A 348 LYS A 350 0 SHEET 2 AA2 2 TYR A 358 PHE A 360 -1 O LYS A 359 N THR A 349 SHEET 1 AA3 4 LEU D 113 VAL D 114 0 SHEET 2 AA3 4 PHE D 121 SER D 124 -1 O CYS D 123 N VAL D 114 SHEET 3 AA3 4 PHE D 140 ALA D 144 -1 O VAL D 143 N LEU D 122 SHEET 4 AA3 4 VAL D 179 PHE D 182 -1 O ALA D 180 N VAL D 142 SHEET 1 AA4 2 HIS D 129 ARG D 131 0 SHEET 2 AA4 2 LYS D 218 THR D 220 1 O LYS D 218 N TRP D 130 SHEET 1 AA510 SER D 172 VAL D 174 0 SHEET 2 AA510 VAL D 153 MET D 157 -1 N VAL D 154 O ALA D 173 SHEET 3 AA510 THR D 200 PHE D 204 -1 O THR D 200 N MET D 157 SHEET 4 AA510 GLN D 209 VAL D 210 -1 O GLN D 209 N VAL D 203 SHEET 5 AA510 ILE G 102 LEU G 103 1 O ILE G 102 N VAL D 210 SHEET 6 AA510 VAL G 106 ILE G 109 -1 O VAL G 106 N LEU G 103 SHEET 7 AA510 ASP G 120 PHE G 127 -1 O GLU G 126 N ILE G 109 SHEET 8 AA510 CYS G 25 TYR G 29 -1 N CYS G 25 O GLY G 123 SHEET 9 AA510 ARG G 52 PHE G 57 -1 O ALA G 56 N LYS G 28 SHEET 10 AA510 THR G 62 GLN G 67 -1 O LEU G 66 N SER G 53 SHEET 1 AA6 9 SER D 172 VAL D 174 0 SHEET 2 AA6 9 VAL D 153 MET D 157 -1 N VAL D 154 O ALA D 173 SHEET 3 AA6 9 THR D 200 PHE D 204 -1 O THR D 200 N MET D 157 SHEET 4 AA6 9 GLN D 209 VAL D 210 -1 O GLN D 209 N VAL D 203 SHEET 5 AA6 9 ILE G 102 LEU G 103 1 O ILE G 102 N VAL D 210 SHEET 6 AA6 9 VAL G 106 ILE G 109 -1 O VAL G 106 N LEU G 103 SHEET 7 AA6 9 ASP G 120 PHE G 127 -1 O GLU G 126 N ILE G 109 SHEET 8 AA6 9 ILE G 114 ASP G 115 -1 N ASP G 115 O ASP G 120 SHEET 9 AA6 9 LYS G 94 VAL G 95 -1 N VAL G 95 O ILE G 114 SHEET 1 AA7 2 LEU D 168 ARG D 169 0 SHEET 2 AA7 2 ARG D 186 PHE D 187 -1 O ARG D 186 N ARG D 169 CISPEP 1 ASN D 206 PRO D 207 0 -2.21 CRYST1 104.513 104.513 322.040 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009568 0.005524 0.000000 0.00000 SCALE2 0.000000 0.011048 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003105 0.00000