HEADER TRANSCRIPTION 07-JAN-20 6VGE TITLE CRYSTAL STRUCTURE OF THE DNA BINDING DOMAINS OF HUMAN TRANSCRIPTION TITLE 2 FACTOR ERG, HUMAN RUNX2 BOUND TO CORE BINDING FACTOR BETA (CBFB), IN TITLE 3 COMPLEX WITH 16MER DNA CAGAGGATGTGGCTTC COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR ERG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA BINDING DOMAIN; COMPND 5 SYNONYM: TRANSFORMING PROTEIN ERG; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: THE N-TERMINAL GPHM IS LEFT OVER FROM THE AFFINITY TAG COMPND 8 AFTER ITS CLEAVAGE; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'- COMPND 11 D(P*CP*AP*GP*AP*GP*GP*AP*TP*GP*TP*GP*GP*CP*TP*TP*C)-3'); COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: SYNTHETIC DNA; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: DNA (5'- COMPND 17 D(P*GP*AP*AP*GP*CP*CP*AP*CP*AP*TP*CP*CP*TP*CP*TP*G)-3'); COMPND 18 CHAIN: C; COMPND 19 ENGINEERED: YES; COMPND 20 OTHER_DETAILS: SYNTHETIC DNA; COMPND 21 MOL_ID: 4; COMPND 22 MOLECULE: RUNT-RELATED TRANSCRIPTION FACTOR 2; COMPND 23 CHAIN: D; COMPND 24 FRAGMENT: DNA BINDING DOMAIN; COMPND 25 SYNONYM: ACUTE MYELOID LEUKEMIA 3 PROTEIN,CORE-BINDING FACTOR SUBUNIT COMPND 26 ALPHA-1,CBF-ALPHA-1,ONCOGENE AML-3,OSTEOBLAST-SPECIFIC TRANSCRIPTION COMPND 27 FACTOR 2,OSF-2,POLYOMAVIRUS ENHANCER-BINDING PROTEIN 2 ALPHA A COMPND 28 SUBUNIT,PEBP2-ALPHA A,SL3-3 ENHANCER FACTOR 1 ALPHA A SUBUNIT,SL3/AKV COMPND 29 CORE-BINDING FACTOR ALPHA A SUBUNIT; COMPND 30 ENGINEERED: YES; COMPND 31 MOL_ID: 5; COMPND 32 MOLECULE: CORE-BINDING FACTOR SUBUNIT BETA; COMPND 33 CHAIN: G; COMPND 34 FRAGMENT: DNA BINDING DOMAIN; COMPND 35 SYNONYM: CBF-BETA,POLYOMAVIRUS ENHANCER-BINDING PROTEIN 2 BETA COMPND 36 SUBUNIT,PEBP2-BETA,SL3-3 ENHANCER FACTOR 1 SUBUNIT BETA,SL3/AKV CORE- COMPND 37 BINDING FACTOR BETA SUBUNIT; COMPND 38 ENGINEERED: YES; COMPND 39 OTHER_DETAILS: THE N-TERMINAL AGSSHHHHHHSQDP IS THE AFFINITY TAG. THE COMPND 40 GAPS CORRESPOND TO DISORDER IN THE CRYSTAL. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ERG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_COMMON: HUMAN; SOURCE 17 ORGANISM_TAXID: 9606; SOURCE 18 MOL_ID: 4; SOURCE 19 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 20 ORGANISM_COMMON: HUMAN; SOURCE 21 ORGANISM_TAXID: 9606; SOURCE 22 GENE: RUNX2, AML3, CBFA1, OSF2, PEBP2A; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 24 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 25 MOL_ID: 5; SOURCE 26 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 27 ORGANISM_COMMON: HUMAN; SOURCE 28 ORGANISM_TAXID: 9606; SOURCE 29 GENE: CBFB; SOURCE 30 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 31 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS EWING SARCOMA, ENHANCER, TRANSCRIPTION FACTOR, ONCOGENESIS, PROSTATE KEYWDS 2 CANCER, ETS-FAMILY, RUNT-FAMILY, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR C.HOU,O.V.TSODIKOV REVDAT 4 11-OCT-23 6VGE 1 REMARK REVDAT 3 19-MAY-21 6VGE 1 JRNL REVDAT 2 16-DEC-20 6VGE 1 JRNL REVDAT 1 25-NOV-20 6VGE 0 JRNL AUTH C.HOU,A.MANDAL,J.ROHR,O.V.TSODIKOV JRNL TITL ALLOSTERIC INTERFERENCE IN ONCOGENIC FLI1 AND ERG JRNL TITL 2 TRANSACTIONS BY MITHRAMYCINS. JRNL REF STRUCTURE V. 29 404 2021 JRNL REFN ISSN 0969-2126 JRNL PMID 33275876 JRNL DOI 10.1016/J.STR.2020.11.012 REMARK 2 REMARK 2 RESOLUTION. 4.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 7120 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.313 REMARK 3 R VALUE (WORKING SET) : 0.313 REMARK 3 FREE R VALUE : 0.317 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT : 408 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 4.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 4.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 498 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.5210 REMARK 3 BIN FREE R VALUE SET COUNT : 34 REMARK 3 BIN FREE R VALUE : 0.5850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2705 REMARK 3 NUCLEIC ACID ATOMS : 656 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 282.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.08000 REMARK 3 B22 (A**2) : 3.08000 REMARK 3 B33 (A**2) : -10.01000 REMARK 3 B12 (A**2) : 1.54000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.960 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 1.180 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 240.050 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3496 ; 0.003 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2891 ; 0.002 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4850 ; 1.177 ; 1.544 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6710 ; 1.108 ; 1.763 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 330 ; 6.838 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 173 ;29.371 ;20.925 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 474 ;16.724 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;16.804 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 439 ; 0.044 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3488 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 805 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 305 A 402 REMARK 3 ORIGIN FOR THE GROUP (A): -40.718 15.396 -44.442 REMARK 3 T TENSOR REMARK 3 T11: 1.0520 T22: 0.3913 REMARK 3 T33: 0.2425 T12: -0.5939 REMARK 3 T13: 0.0421 T23: -0.1392 REMARK 3 L TENSOR REMARK 3 L11: 4.7967 L22: 8.5329 REMARK 3 L33: 11.0490 L12: -2.9543 REMARK 3 L13: -1.0425 L23: -5.1885 REMARK 3 S TENSOR REMARK 3 S11: -0.0073 S12: 0.0192 S13: -0.1301 REMARK 3 S21: 0.0797 S22: -0.0739 S23: 0.1036 REMARK 3 S31: 0.1102 S32: -0.1204 S33: 0.0812 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 16 REMARK 3 ORIGIN FOR THE GROUP (A): -39.101 22.424 -30.639 REMARK 3 T TENSOR REMARK 3 T11: 1.6519 T22: 1.1406 REMARK 3 T33: 0.2738 T12: -0.4613 REMARK 3 T13: -0.0815 T23: -0.2062 REMARK 3 L TENSOR REMARK 3 L11: 3.6478 L22: 5.2361 REMARK 3 L33: 2.2698 L12: -3.9148 REMARK 3 L13: -0.8450 L23: 2.3301 REMARK 3 S TENSOR REMARK 3 S11: -0.2313 S12: -0.0329 S13: 0.1004 REMARK 3 S21: 0.8429 S22: 0.8085 S23: -0.4929 REMARK 3 S31: 0.7352 S32: 0.8483 S33: -0.5772 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 17 REMARK 3 ORIGIN FOR THE GROUP (A): -39.262 22.512 -28.568 REMARK 3 T TENSOR REMARK 3 T11: 1.7191 T22: 1.0102 REMARK 3 T33: 0.5638 T12: -0.5734 REMARK 3 T13: -0.0075 T23: 0.2922 REMARK 3 L TENSOR REMARK 3 L11: 0.6715 L22: 11.5976 REMARK 3 L33: 3.4988 L12: -2.7300 REMARK 3 L13: -0.5536 L23: 1.0280 REMARK 3 S TENSOR REMARK 3 S11: -0.3677 S12: -0.3091 S13: 0.1848 REMARK 3 S21: 2.0068 S22: 1.5933 S23: -0.3068 REMARK 3 S31: -0.2405 S32: -0.5704 S33: -1.2256 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 111 D 227 REMARK 3 ORIGIN FOR THE GROUP (A): -51.115 39.798 -15.329 REMARK 3 T TENSOR REMARK 3 T11: 1.3479 T22: 1.0571 REMARK 3 T33: 0.4596 T12: -0.2408 REMARK 3 T13: -0.0139 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 5.0021 L22: 5.1136 REMARK 3 L33: 1.8207 L12: -1.4887 REMARK 3 L13: -1.9927 L23: 2.2316 REMARK 3 S TENSOR REMARK 3 S11: -0.2129 S12: 0.4194 S13: 0.5361 REMARK 3 S21: 0.1400 S22: -0.0239 S23: 0.5335 REMARK 3 S31: -0.0791 S32: -0.6785 S33: 0.2368 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 2 G 139 REMARK 3 ORIGIN FOR THE GROUP (A): -62.577 54.608 -23.647 REMARK 3 T TENSOR REMARK 3 T11: 2.8022 T22: 2.2735 REMARK 3 T33: 2.3602 T12: -0.0191 REMARK 3 T13: -0.1967 T23: 0.1446 REMARK 3 L TENSOR REMARK 3 L11: 4.2613 L22: 0.9836 REMARK 3 L33: 1.2607 L12: -1.7241 REMARK 3 L13: -2.2904 L23: 0.8905 REMARK 3 S TENSOR REMARK 3 S11: 0.2868 S12: 1.3686 S13: -0.2028 REMARK 3 S21: 0.1088 S22: -0.4292 S23: 0.8663 REMARK 3 S31: -0.3849 S32: -0.8054 S33: 0.1423 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6VGE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246342. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7550 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.32 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.38200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6VGD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.6 M K/NA TARTRATE, 0.1 M HEPES, REMARK 280 PH7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 215.27467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 107.63733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 215.27467 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 107.63733 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 215.27467 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 107.63733 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 215.27467 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 107.63733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 302 REMARK 465 PRO A 303 REMARK 465 HIS A 304 REMARK 465 PRO A 403 REMARK 465 PRO A 404 REMARK 465 GLU A 405 REMARK 465 SER A 406 REMARK 465 SER A 407 REMARK 465 LEU A 408 REMARK 465 TYR A 409 REMARK 465 LYS A 410 REMARK 465 TYR A 411 REMARK 465 PRO A 412 REMARK 465 SER A 413 REMARK 465 ASP A 414 REMARK 465 LEU A 415 REMARK 465 PRO A 416 REMARK 465 TYR A 417 REMARK 465 MET A 418 REMARK 465 GLY A 419 REMARK 465 SER A 420 REMARK 465 TYR A 421 REMARK 465 HIS A 422 REMARK 465 ALA A 423 REMARK 465 HIS A 424 REMARK 465 PRO A 425 REMARK 465 GLN A 426 REMARK 465 LYS A 427 REMARK 465 MET A 428 REMARK 465 ASN A 429 REMARK 465 ARG D 228 REMARK 465 ARG D 229 REMARK 465 HIS D 230 REMARK 465 ARG D 231 REMARK 465 GLN D 232 REMARK 465 LYS D 233 REMARK 465 LEU D 234 REMARK 465 ASP D 235 REMARK 465 ASP D 236 REMARK 465 SER D 237 REMARK 465 LYS D 238 REMARK 465 PRO D 239 REMARK 465 SER D 240 REMARK 465 LEU D 241 REMARK 465 PHE D 242 REMARK 465 SER D 243 REMARK 465 ASP D 244 REMARK 465 ARG D 245 REMARK 465 LEU D 246 REMARK 465 SER D 247 REMARK 465 ASP D 248 REMARK 465 LEU D 249 REMARK 465 GLY D 250 REMARK 465 ARG D 251 REMARK 465 ILE D 252 REMARK 465 PRO D 253 REMARK 465 HIS D 254 REMARK 465 PRO D 255 REMARK 465 SER D 256 REMARK 465 MET D 257 REMARK 465 ARG D 258 REMARK 465 VAL D 259 REMARK 465 GLY D 260 REMARK 465 VAL D 261 REMARK 465 PRO D 262 REMARK 465 PRO D 263 REMARK 465 GLN D 264 REMARK 465 ASN D 265 REMARK 465 PRO D 266 REMARK 465 ARG D 267 REMARK 465 PRO D 268 REMARK 465 SER D 269 REMARK 465 LEU D 270 REMARK 465 ASN D 271 REMARK 465 SER D 272 REMARK 465 ALA D 273 REMARK 465 PRO D 274 REMARK 465 SER D 275 REMARK 465 PRO D 276 REMARK 465 PHE D 277 REMARK 465 ASN D 278 REMARK 465 PRO D 279 REMARK 465 GLN D 280 REMARK 465 GLY D 281 REMARK 465 GLN D 282 REMARK 465 SER D 283 REMARK 465 GLN D 284 REMARK 465 ILE D 285 REMARK 465 THR D 286 REMARK 465 ASP D 287 REMARK 465 MET G -13 REMARK 465 GLY G -12 REMARK 465 SER G -11 REMARK 465 SER G -10 REMARK 465 HIS G -9 REMARK 465 HIS G -8 REMARK 465 HIS G -7 REMARK 465 HIS G -6 REMARK 465 HIS G -5 REMARK 465 HIS G -4 REMARK 465 SER G -3 REMARK 465 GLN G -2 REMARK 465 ASP G -1 REMARK 465 PRO G 0 REMARK 465 MET G 1 REMARK 465 ALA G 71 REMARK 465 SER G 72 REMARK 465 TRP G 73 REMARK 465 GLN G 74 REMARK 465 GLY G 75 REMARK 465 GLU G 76 REMARK 465 GLN G 77 REMARK 465 ARG G 78 REMARK 465 GLN G 79 REMARK 465 THR G 80 REMARK 465 LEU G 97 REMARK 465 LYS G 98 REMARK 465 ALA G 99 REMARK 465 PRO G 100 REMARK 465 TRP G 110 REMARK 465 LYS G 111 REMARK 465 GLY G 112 REMARK 465 GLN G 140 REMARK 465 GLN G 141 REMARK 465 ALA G 142 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 333 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 306 6.40 -65.21 REMARK 500 SER A 308 -71.62 -50.01 REMARK 500 LEU A 313 -73.54 -85.76 REMARK 500 THR A 342 -89.07 -61.02 REMARK 500 VAL A 347 -70.85 -45.62 REMARK 500 ASP A 363 -38.09 -38.81 REMARK 500 ARG A 385 89.92 -66.60 REMARK 500 TYR A 386 55.45 76.82 REMARK 500 PRO A 401 -158.79 -78.11 REMARK 500 ARG D 115 172.31 -57.35 REMARK 500 SER D 128 -70.22 -42.85 REMARK 500 ASN D 133 82.07 63.01 REMARK 500 THR D 135 102.97 -50.70 REMARK 500 ALA D 139 165.73 -49.75 REMARK 500 ASP D 150 97.74 -59.93 REMARK 500 ASP D 161 -38.82 -39.31 REMARK 500 ASN D 163 77.29 36.32 REMARK 500 ASN D 183 -59.94 -29.08 REMARK 500 ASP D 184 94.28 -161.96 REMARK 500 VAL D 188 -68.46 -103.05 REMARK 500 PRO D 224 93.39 -57.74 REMARK 500 ASN G 14 -40.49 -132.00 REMARK 500 SER G 53 -175.22 -171.75 REMARK 500 ARG G 83 -62.18 -133.23 REMARK 500 LEU G 138 40.25 -79.80 REMARK 500 REMARK 500 REMARK: NULL DBREF 6VGE A 306 419 UNP P11308 ERG_HUMAN 313 426 DBREF 6VGE B 1 16 PDB 6VGE 6VGE 1 16 DBREF 6VGE C 2 17 PDB 6VGE 6VGE 2 17 DBREF 6VGE D 111 287 UNP Q13950 RUNX2_HUMAN 111 287 DBREF 6VGE G 1 142 UNP Q13951 PEBB_HUMAN 1 142 SEQADV 6VGE GLY A 302 UNP P11308 EXPRESSION TAG SEQADV 6VGE PRO A 303 UNP P11308 EXPRESSION TAG SEQADV 6VGE HIS A 304 UNP P11308 EXPRESSION TAG SEQADV 6VGE MET A 305 UNP P11308 EXPRESSION TAG SEQADV 6VGE SER A 420 UNP P11308 EXPRESSION TAG SEQADV 6VGE TYR A 421 UNP P11308 EXPRESSION TAG SEQADV 6VGE HIS A 422 UNP P11308 EXPRESSION TAG SEQADV 6VGE ALA A 423 UNP P11308 EXPRESSION TAG SEQADV 6VGE HIS A 424 UNP P11308 EXPRESSION TAG SEQADV 6VGE PRO A 425 UNP P11308 EXPRESSION TAG SEQADV 6VGE GLN A 426 UNP P11308 EXPRESSION TAG SEQADV 6VGE LYS A 427 UNP P11308 EXPRESSION TAG SEQADV 6VGE MET A 428 UNP P11308 EXPRESSION TAG SEQADV 6VGE ASN A 429 UNP P11308 EXPRESSION TAG SEQADV 6VGE MET G -13 UNP Q13951 INITIATING METHIONINE SEQADV 6VGE GLY G -12 UNP Q13951 EXPRESSION TAG SEQADV 6VGE SER G -11 UNP Q13951 EXPRESSION TAG SEQADV 6VGE SER G -10 UNP Q13951 EXPRESSION TAG SEQADV 6VGE HIS G -9 UNP Q13951 EXPRESSION TAG SEQADV 6VGE HIS G -8 UNP Q13951 EXPRESSION TAG SEQADV 6VGE HIS G -7 UNP Q13951 EXPRESSION TAG SEQADV 6VGE HIS G -6 UNP Q13951 EXPRESSION TAG SEQADV 6VGE HIS G -5 UNP Q13951 EXPRESSION TAG SEQADV 6VGE HIS G -4 UNP Q13951 EXPRESSION TAG SEQADV 6VGE SER G -3 UNP Q13951 EXPRESSION TAG SEQADV 6VGE GLN G -2 UNP Q13951 EXPRESSION TAG SEQADV 6VGE ASP G -1 UNP Q13951 EXPRESSION TAG SEQADV 6VGE PRO G 0 UNP Q13951 EXPRESSION TAG SEQRES 1 A 128 GLY PRO HIS MET PRO GLY SER GLY GLN ILE GLN LEU TRP SEQRES 2 A 128 GLN PHE LEU LEU GLU LEU LEU SER ASP SER SER ASN SER SEQRES 3 A 128 SER CYS ILE THR TRP GLU GLY THR ASN GLY GLU PHE LYS SEQRES 4 A 128 MET THR ASP PRO ASP GLU VAL ALA ARG ARG TRP GLY GLU SEQRES 5 A 128 ARG LYS SER LYS PRO ASN MET ASN TYR ASP LYS LEU SER SEQRES 6 A 128 ARG ALA LEU ARG TYR TYR TYR ASP LYS ASN ILE MET THR SEQRES 7 A 128 LYS VAL HIS GLY LYS ARG TYR ALA TYR LYS PHE ASP PHE SEQRES 8 A 128 HIS GLY ILE ALA GLN ALA LEU GLN PRO HIS PRO PRO GLU SEQRES 9 A 128 SER SER LEU TYR LYS TYR PRO SER ASP LEU PRO TYR MET SEQRES 10 A 128 GLY SER TYR HIS ALA HIS PRO GLN LYS MET ASN SEQRES 1 B 16 DC DA DG DA DG DG DA DT DG DT DG DG DC SEQRES 2 B 16 DT DT DC SEQRES 1 C 16 DG DA DA DG DC DC DA DC DA DT DC DC DT SEQRES 2 C 16 DC DT DG SEQRES 1 D 177 ALA GLU LEU VAL ARG THR ASP SER PRO ASN PHE LEU CYS SEQRES 2 D 177 SER VAL LEU PRO SER HIS TRP ARG CYS ASN LYS THR LEU SEQRES 3 D 177 PRO VAL ALA PHE LYS VAL VAL ALA LEU GLY GLU VAL PRO SEQRES 4 D 177 ASP GLY THR VAL VAL THR VAL MET ALA GLY ASN ASP GLU SEQRES 5 D 177 ASN TYR SER ALA GLU LEU ARG ASN ALA SER ALA VAL MET SEQRES 6 D 177 LYS ASN GLN VAL ALA ARG PHE ASN ASP LEU ARG PHE VAL SEQRES 7 D 177 GLY ARG SER GLY ARG GLY LYS SER PHE THR LEU THR ILE SEQRES 8 D 177 THR VAL PHE THR ASN PRO PRO GLN VAL ALA THR TYR HIS SEQRES 9 D 177 ARG ALA ILE LYS VAL THR VAL ASP GLY PRO ARG GLU PRO SEQRES 10 D 177 ARG ARG HIS ARG GLN LYS LEU ASP ASP SER LYS PRO SER SEQRES 11 D 177 LEU PHE SER ASP ARG LEU SER ASP LEU GLY ARG ILE PRO SEQRES 12 D 177 HIS PRO SER MET ARG VAL GLY VAL PRO PRO GLN ASN PRO SEQRES 13 D 177 ARG PRO SER LEU ASN SER ALA PRO SER PRO PHE ASN PRO SEQRES 14 D 177 GLN GLY GLN SER GLN ILE THR ASP SEQRES 1 G 156 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 G 156 PRO MET PRO ARG VAL VAL PRO ASP GLN ARG SER LYS PHE SEQRES 3 G 156 GLU ASN GLU GLU PHE PHE ARG LYS LEU SER ARG GLU CYS SEQRES 4 G 156 GLU ILE LYS TYR THR GLY PHE ARG ASP ARG PRO HIS GLU SEQRES 5 G 156 GLU ARG GLN ALA ARG PHE GLN ASN ALA CYS ARG ASP GLY SEQRES 6 G 156 ARG SER GLU ILE ALA PHE VAL ALA THR GLY THR ASN LEU SEQRES 7 G 156 SER LEU GLN PHE PHE PRO ALA SER TRP GLN GLY GLU GLN SEQRES 8 G 156 ARG GLN THR PRO SER ARG GLU TYR VAL ASP LEU GLU ARG SEQRES 9 G 156 GLU ALA GLY LYS VAL TYR LEU LYS ALA PRO MET ILE LEU SEQRES 10 G 156 ASN GLY VAL CYS VAL ILE TRP LYS GLY TRP ILE ASP LEU SEQRES 11 G 156 GLN ARG LEU ASP GLY MET GLY CYS LEU GLU PHE ASP GLU SEQRES 12 G 156 GLU ARG ALA GLN GLN GLU ASP ALA LEU ALA GLN GLN ALA HELIX 1 AA1 LEU A 313 SER A 322 1 10 HELIX 2 AA2 ASP A 323 SER A 327 5 5 HELIX 3 AA3 ASP A 343 SER A 356 1 14 HELIX 4 AA4 ASN A 361 ASN A 376 1 16 HELIX 5 AA5 ASP A 391 ALA A 396 1 6 HELIX 6 AA6 ASP G 7 GLU G 13 1 7 HELIX 7 AA7 GLU G 15 LYS G 20 1 6 HELIX 8 AA8 PRO G 36 GLY G 51 1 16 HELIX 9 AA9 ASP G 128 ALA G 137 1 10 SHEET 1 AA1 2 ILE A 330 TRP A 332 0 SHEET 2 AA1 2 PHE A 339 MET A 341 -1 O LYS A 340 N THR A 331 SHEET 1 AA2 2 MET A 378 LYS A 380 0 SHEET 2 AA2 2 TYR A 388 PHE A 390 -1 O LYS A 389 N THR A 379 SHEET 1 AA3 4 LEU D 113 VAL D 114 0 SHEET 2 AA3 4 PHE D 121 SER D 124 -1 O CYS D 123 N VAL D 114 SHEET 3 AA3 4 PHE D 140 ALA D 144 -1 O VAL D 143 N LEU D 122 SHEET 4 AA3 4 VAL D 179 PHE D 182 -1 O ALA D 180 N VAL D 142 SHEET 1 AA4 2 HIS D 129 ARG D 131 0 SHEET 2 AA4 2 LYS D 218 THR D 220 1 O LYS D 218 N TRP D 130 SHEET 1 AA5 6 SER D 172 VAL D 174 0 SHEET 2 AA5 6 VAL D 153 MET D 157 -1 N VAL D 154 O ALA D 173 SHEET 3 AA5 6 THR D 200 PHE D 204 -1 O THR D 200 N MET D 157 SHEET 4 AA5 6 GLN D 209 VAL D 210 -1 O GLN D 209 N VAL D 203 SHEET 5 AA5 6 ILE G 102 LEU G 103 1 O ILE G 102 N VAL D 210 SHEET 6 AA5 6 VAL G 106 CYS G 107 -1 O VAL G 106 N LEU G 103 SHEET 1 AA6 2 LEU D 168 ARG D 169 0 SHEET 2 AA6 2 ARG D 186 PHE D 187 -1 O ARG D 186 N ARG D 169 SHEET 1 AA7 4 ASN G 63 GLN G 67 0 SHEET 2 AA7 4 ARG G 52 PHE G 57 -1 N SER G 53 O LEU G 66 SHEET 3 AA7 4 CYS G 25 TYR G 29 -1 N LYS G 28 O ALA G 56 SHEET 4 AA7 4 ASP G 120 GLY G 123 -1 O GLY G 123 N CYS G 25 SHEET 1 AA8 2 LYS G 94 VAL G 95 0 SHEET 2 AA8 2 ILE G 114 ASP G 115 -1 O ILE G 114 N VAL G 95 CISPEP 1 ASN D 206 PRO D 207 0 -2.14 CRYST1 103.917 103.917 322.912 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009623 0.005556 0.000000 0.00000 SCALE2 0.000000 0.011112 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003097 0.00000