data_6VGP # _entry.id 6VGP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.332 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6VGP WWPDB D_1000246336 BMRB 30709 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2020-09-09 _pdbx_database_PDB_obs_spr.pdb_id 7JU9 _pdbx_database_PDB_obs_spr.replace_pdb_id 6VGP _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution NMR structure of Prochlorosin 2.11 (Pcn2.11) produced by Prochlorococcus MIT 9313' _pdbx_database_related.db_id 30709 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr OBS _pdbx_database_status.entry_id 6VGP _pdbx_database_status.recvd_initial_deposition_date 2020-01-08 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs OBS _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bobeica, S.C.' 1 0000-0001-5058-5543 'van der Donk, W.A.' 2 0000-0002-5467-7071 'Zhu, L.' 3 0000-0002-6657-271X # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? UK ? ? primary 'Chem Sci' ? ? 2041-6539 ? ? ? ? ? ? 'Structural Determinants of Macrocyclization in Substrate-Controlled Lanthipeptide Biosynthetic Pathways' 2020 ? 10.1039/D0SC01651A ? ? ? ? ? ? ? ? ? US ? ? 1 Proc.Natl.Acad.Sci.USA PNASA6 0040 1091-6490 ? ? 107 ? 10430 10435 'Catalytic promiscuity in the biosynthesis of cyclic peptide secondary metabolites in planktonic marine cyanobacteria.' 2010 ? 10.1073/pnas.0913677107 20479271 ? ? ? ? ? ? ? ? US ? ? 2 Proc.Natl.Acad.Sci.USA PNASA6 0040 1091-6490 ? ? 114 ? E5424 E5433 'Evolutionary radiation of lanthipeptides in marine cyanobacteria.' 2017 ? 10.1073/pnas.1700990114 28630351 ? ? ? ? ? ? ? ? US ? ? 3 Biochemistry BICHAW 0033 0006-2960 ? ? 51 ? 4271 4279 'Structural characterization of four prochlorosins: a novel class of lantipeptides produced by planktonic marine cyanobacteria.' 2012 ? 10.1021/bi300255s 22574919 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bobeica, S.C.' 1 ? primary 'Zhu, L.' 2 ? primary 'Acedo, J.Z.' 3 ? primary 'Tang, W.' 4 ? primary 'van der Donk, W.A.' 5 ? 1 'Li, B.' 6 ? 1 'Sher, D.' 7 ? 1 'Kelly, L.' 8 ? 1 'Shi, Y.' 9 ? 1 'Huang, K.' 10 ? 1 'Knerr, P.J.' 11 ? 1 'Joewono, I.' 12 ? 1 'Rusch, D.' 13 ? 1 'Chisholm, S.W.' 14 ? 1 'van der Donk, W.A.' 15 ? 2 'Cubillos-Ruiz, A.' 16 ? 2 'Berta-Thompson, J.W.' 17 ? 2 'Becker, J.W.' 18 ? 2 'van der Donk, W.A.' 19 ? 2 'Chisholm, S.W.' 20 ? 3 'Tang, W.' 21 ? 3 'van der Donk, W.A.' 22 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Prochlorosin 2.11' _entity.formula_weight 1831.042 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name Pcn2.11 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GRID(DBU)CPAGGG(DBB)(DAL)EQ(DBB)G(DBU)CC' _entity_poly.pdbx_seq_one_letter_code_can GRIDTCPAGGGTAEQTGTCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ARG n 1 3 ILE n 1 4 ASP n 1 5 DBU n 1 6 CYS n 1 7 PRO n 1 8 ALA n 1 9 GLY n 1 10 GLY n 1 11 GLY n 1 12 DBB n 1 13 DAL n 1 14 GLU n 1 15 GLN n 1 16 DBB n 1 17 GLY n 1 18 DBU n 1 19 CYS n 1 20 CYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 20 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Prochlorococcus marinus str. MIT 9313' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 74547 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details 'N-terminal His tagged peptide purified from coexpression with lanthipeptide synthetase ProcM' _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pRSFDuet-1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6VGP _struct_ref.pdbx_db_accession 6VGP _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6VGP _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 20 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6VGP _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 20 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DAL 'D-peptide linking' . D-ALANINE ? 'C3 H7 N O2' 89.093 DBB 'D-peptide linking' . 'D-ALPHA-AMINOBUTYRIC ACID' ? 'C4 H9 N O2' 103.120 DBU 'peptide linking' n '(2Z)-2-AMINOBUT-2-ENOIC ACID' Z-DEHYDROBUTYRINE 'C4 H7 N O2' 101.104 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H TOCSY' 1 isotropic 2 1 1 '2D 1H-1H TOCSY' 1 isotropic 3 1 1 '2D 1H-1H NOESY' 1 isotropic 4 2 2 '2D 1H-1H NOESY' 1 isotropic # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 296 atm 1 6 0 ? 0 'Not defined' Pcn2.11_details 0.1 pH 0 0.1 K 2 277 atm 1 6 0 ? 0 'Not defined' Pcn2.11_D2O_details 0.1 pH 0 0.1 K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '1 mM Prochlorosin 2.11, 90% H2O/10% D2O' '90% H2O/10% D2O' Pcn2.11 solution ? 2 '1 mM Prochlorosin 2.11, 100% D2O' '100% D2O' Pcn2.11_D2O solution ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model Agilent _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer VNMRs _pdbx_nmr_spectrometer.field_strength 750 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 6VGP _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 6 # _pdbx_nmr_ensemble.entry_id 6VGP _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6VGP _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'data analysis' NMRDraw ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 2 'peak picking' Sparky ? Goddard 3 'chemical shift assignment' Sparky ? Goddard 4 'data analysis' Sparky ? Goddard 5 'structure calculation' 'X-PLOR NIH' 2.51 'Schwieters, Kuszewski, Tjandra and Clore' 6 refinement 'X-PLOR NIH' 2.51 'Schwieters, Kuszewski, Tjandra and Clore' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6VGP _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6VGP _struct.title 'Solution NMR structure of Prochlorosin 2.11 (Pcn2.11) produced by Prochlorococcus MIT 9313' _struct.pdbx_descriptor 'Prochlorosin 2.11' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6VGP _struct_keywords.text 'lanthipeptide, cyclic peptide, posttranslational modification, RiPP, UNKNOWN FUNCTION' _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 1 ? DBU A 5 ? GLY A 1 DBU A 5 5 ? 5 HELX_P HELX_P2 AA2 DBB A 16 ? CYS A 20 ? DBB A 16 CYS A 20 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ASP 4 C ? ? ? 1_555 A DBU 5 N ? ? A ASP 4 A DBU 5 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale2 covale both ? A DBU 5 C ? ? ? 1_555 A CYS 6 N ? ? A DBU 5 A CYS 6 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale3 covale none ? A CYS 6 SG ? ? ? 1_555 A DBB 12 CB ? ? A CYS 6 A DBB 12 1_555 ? ? ? ? ? ? ? 1.811 ? ? covale4 covale one ? A GLY 11 C ? ? ? 1_555 A DBB 12 N ? ? A GLY 11 A DBB 12 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale5 covale both ? A DBB 12 C ? ? ? 1_555 A DAL 13 N ? ? A DBB 12 A DAL 13 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale6 covale both ? A DAL 13 C ? ? ? 1_555 A GLU 14 N ? ? A DAL 13 A GLU 14 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale7 covale none ? A DAL 13 CB ? ? ? 1_555 A CYS 19 SG ? ? A DAL 13 A CYS 19 1_555 ? ? ? ? ? ? ? 1.804 ? ? covale8 covale one ? A GLN 15 C ? ? ? 1_555 A DBB 16 N ? ? A GLN 15 A DBB 16 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale9 covale both ? A DBB 16 C ? ? ? 1_555 A GLY 17 N ? ? A DBB 16 A GLY 17 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale10 covale none ? A DBB 16 CB ? ? ? 1_555 A CYS 20 SG ? ? A DBB 16 A CYS 20 1_555 ? ? ? ? ? ? ? 1.812 ? ? covale11 covale both ? A GLY 17 C ? ? ? 1_555 A DBU 18 N ? ? A GLY 17 A DBU 18 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale12 covale both ? A DBU 18 C ? ? ? 1_555 A CYS 19 N ? ? A DBU 18 A CYS 19 1_555 ? ? ? ? ? ? ? 1.330 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 6VGP _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 ARG 2 2 2 ARG ARG A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 ASP 4 4 4 ASP ASP A . n A 1 5 DBU 5 5 5 DBU DHB A . n A 1 6 CYS 6 6 6 CYS CYS A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 DBB 12 12 12 DBB DBB A . n A 1 13 DAL 13 13 13 DAL DAL A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 GLN 15 15 15 GLN GLN A . n A 1 16 DBB 16 16 16 DBB DBB A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 DBU 18 18 18 DBU DHB A . n A 1 19 CYS 19 19 19 CYS CYS A . n A 1 20 CYS 20 20 20 CYS CYS A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-07-08 2 'Structure model' 1 1 2020-09-09 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'Structure model' repository Obsolete ? ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_database_PDB_obs_spr 2 2 'Structure model' pdbx_database_status 3 2 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_database_status.status_code' 2 2 'Structure model' '_pdbx_database_status.status_code_cs' 3 2 'Structure model' '_pdbx_database_status.status_code_mr' 4 2 'Structure model' '_struct_conn.pdbx_dist_value' 5 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 7 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 8 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 9 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 10 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 11 2 'Structure model' '_struct_conn.ptnr2_label_seq_id' # _pdbx_entry_details.entry_id 6VGP _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'Prochlorosin 2.11' 1 ? mM 'natural abundance' 2 'Prochlorosin 2.11' 1 ? mM 'natural abundance' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 O A DBB 12 ? ? H A CYS 19 ? ? 1.58 2 9 O A DBB 12 ? ? O A GLY 17 ? ? 2.17 3 10 O A GLY 11 ? ? H A DAL 13 ? ? 1.45 4 14 O A DBB 12 ? ? O A GLY 17 ? ? 2.19 5 16 O A DBB 12 ? ? O A GLY 17 ? ? 2.18 6 16 O A DBB 12 ? ? O A DBB 16 ? ? 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 7 ? ? -72.09 43.42 2 1 DAL A 13 ? ? -63.62 -163.82 3 1 GLU A 14 ? ? -41.63 -17.88 4 1 GLN A 15 ? ? -53.96 -8.92 5 2 ASP A 4 ? ? 32.15 56.19 6 2 DAL A 13 ? ? -77.64 -145.42 7 2 GLU A 14 ? ? -53.51 -6.67 8 3 ASP A 4 ? ? -57.74 81.09 9 3 PRO A 7 ? ? -73.40 39.65 10 3 DAL A 13 ? ? -59.68 -164.79 11 3 GLU A 14 ? ? -39.30 -20.87 12 3 GLN A 15 ? ? -53.65 -9.57 13 4 ALA A 8 ? ? 99.05 43.17 14 4 DBB A 12 ? ? 47.01 19.97 15 4 DAL A 13 ? ? -57.17 -160.71 16 4 GLU A 14 ? ? -39.64 -20.55 17 4 GLN A 15 ? ? -54.52 -8.92 18 5 ASP A 4 ? ? -21.75 113.49 19 5 DAL A 13 ? ? -58.22 -117.12 20 6 CYS A 6 ? ? -150.86 78.65 21 6 PRO A 7 ? ? -69.88 23.41 22 6 DAL A 13 ? ? -69.09 -137.03 23 6 GLN A 15 ? ? -57.14 -6.57 24 7 ALA A 8 ? ? 94.45 44.22 25 7 DAL A 13 ? ? -64.16 -157.19 26 7 GLU A 14 ? ? -38.57 -21.36 27 8 PRO A 7 ? ? -70.82 42.44 28 8 DAL A 13 ? ? -67.13 -135.78 29 8 GLN A 15 ? ? -58.79 -4.12 30 9 ALA A 8 ? ? 102.33 55.92 31 9 DBB A 12 ? ? 43.15 19.64 32 9 DAL A 13 ? ? -51.83 -163.60 33 9 GLU A 14 ? ? -37.65 -22.97 34 9 GLN A 15 ? ? -54.65 -7.90 35 10 ILE A 3 ? ? 73.06 -16.71 36 10 DBB A 12 ? ? -61.90 45.90 37 10 DAL A 13 ? ? -72.33 -115.52 38 10 CYS A 19 ? ? -156.65 -31.22 39 11 ILE A 3 ? ? 73.01 -5.98 40 11 CYS A 6 ? ? -117.92 57.89 41 11 PRO A 7 ? ? -69.46 6.89 42 11 DBB A 12 ? ? 35.08 26.94 43 11 DAL A 13 ? ? -53.77 -155.35 44 11 GLU A 14 ? ? -43.74 -15.42 45 12 PRO A 7 ? ? -69.98 18.25 46 12 ALA A 8 ? ? -107.92 -74.09 47 12 DBB A 12 ? ? -62.45 22.97 48 12 DAL A 13 ? ? -57.79 -124.87 49 13 PRO A 7 ? ? -81.13 43.36 50 13 DAL A 13 ? ? -76.24 -118.97 51 14 ASP A 4 ? ? -38.81 123.72 52 14 PRO A 7 ? ? -84.02 42.94 53 14 DAL A 13 ? ? -86.97 -81.31 54 14 GLU A 14 ? ? -78.39 27.55 55 15 ALA A 8 ? ? 100.05 46.85 56 15 DAL A 13 ? ? -50.88 -159.38 57 15 GLN A 15 ? ? -52.25 -9.74 58 16 PRO A 7 ? ? -69.69 54.72 59 16 ALA A 8 ? ? -158.41 -36.81 60 16 DAL A 13 ? ? -84.87 -83.23 61 16 GLU A 14 ? ? -78.37 33.07 62 17 PRO A 7 ? ? -51.63 -8.57 63 17 ALA A 8 ? ? 91.37 28.80 64 17 DBB A 12 ? ? 34.40 28.25 65 17 DAL A 13 ? ? -61.85 -112.65 66 17 CYS A 19 ? ? -172.33 31.75 67 18 ILE A 3 ? ? 73.40 -16.03 68 18 DBB A 12 ? ? 34.29 29.41 69 18 DAL A 13 ? ? -61.23 -118.33 70 18 CYS A 19 ? ? -167.95 20.27 71 19 DBB A 12 ? ? -58.96 8.88 72 19 DAL A 13 ? ? -49.11 -115.58 73 20 ILE A 3 ? ? 73.38 -27.32 74 20 DBB A 12 ? ? 35.02 29.45 75 20 DAL A 13 ? ? -61.69 -117.52 76 20 CYS A 19 ? ? -149.31 -17.96 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number R37GM058822 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 DAL ? ? DAL ? ? 'SUBJECT OF INVESTIGATION' ? 2 DBB ? ? DBB ? ? 'SUBJECT OF INVESTIGATION' ? 3 DBU ? ? DBU ? ? 'SUBJECT OF INVESTIGATION' ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'mass spectrometry' _pdbx_struct_assembly_auth_evidence.details ? #