HEADER PROTEIN FIBRIL 11-JAN-20 6VI3 TITLE STRAIGHT FILAMENT FROM ALZHEIMER'S DISEASE HUMAN BRAIN TISSUE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MICROTUBULE-ASSOCIATED PROTEIN TAU; COMPND 3 CHAIN: E, F; COMPND 4 SYNONYM: NEUROFIBRILLARY TANGLE PROTEIN,PAIRED HELICAL FILAMENT-TAU, COMPND 5 PHF-TAU; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAPT, MAPTL, MTBT1, TAU; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS PATHOLOGICAL AMYLOID FIBRIL CROSS-BETA FOLD PARALLEL BETA-SHEETS, KEYWDS 2 PROTEIN FIBRIL EXPDTA ELECTRON MICROSCOPY AUTHOR T.ARAKHAMIA,C.E.LEE,Y.CARLOMAGNO,D.M.DUONG,S.R.KUNDINGER,K.WANG, AUTHOR 2 D.WILLIAMS,M.DETURE,D.W.DICKSON,C.N.COOK,N.T.SEYFRIED,L.PETRUCELLI, AUTHOR 3 A.W.P.FITZPATRICK REVDAT 2 06-MAR-24 6VI3 1 JRNL REMARK LINK REVDAT 1 15-APR-20 6VI3 0 JRNL AUTH T.ARAKHAMIA,C.E.LEE,Y.CARLOMAGNO,D.M.DUONG,S.R.KUNDINGER, JRNL AUTH 2 K.WANG,D.WILLIAMS,M.DETURE,D.W.DICKSON,C.N.COOK, JRNL AUTH 3 N.T.SEYFRIED,L.PETRUCELLI,A.W.P.FITZPATRICK JRNL TITL POSTTRANSLATIONAL MODIFICATIONS MEDIATE THE STRUCTURAL JRNL TITL 2 DIVERSITY OF TAUOPATHY STRAINS JRNL REF CELL V. 180 633 2020 JRNL REFN ISSN 1097-4172 JRNL PMID 32032505 JRNL DOI 10.1016/J.CELL.2020.01.027 REMARK 0 REMARK 0 THIS ENTRY 6VI3 REFLECTS AN ALTERNATIVE MODELING OF THE REMARK 0 ORIGINAL DATA IN EMD-0260, DETERMINED BY FALCON, B. ET AL. REMARK 0 ORIGINAL DATA REFERENCE 1 REMARK 0 AUTH B.FALCON,W.ZHANG,M.SCHWEIGHAUSER,A.G.MURZIN,R.VIDAL, REMARK 0 AUTH 2 H.J.GARRINGER,B.GHETTI,S.H.W.SCHERES,M.GOEDERT REMARK 0 TITL TAU FILAMENTS FROM MULTIPLE CASES OF SPORADIC AND INHERITED REMARK 0 TITL 2 ALZHEIMER'S DISEASE ADOPT A COMMON FOLD REMARK 0 REF ACTA NEUROPATHOL. V. 136 699 2018 REMARK 0 REFN ESSN 1432-0533 REMARK 0 PMID 30276465 REMARK 0 DOI 10.1007/S00401-018-1914-Z REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.300 REMARK 3 NUMBER OF PARTICLES : 62782 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6VI3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246417. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : STRAIGHT FILAMENT FROM REMARK 245 ALZHEIMER'S DISEASE HUMAN BRAIN REMARK 245 TISSUE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : UNSPECIFIED REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS F 317 O GLY F 401 1.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP E 348 68.99 60.67 REMARK 500 ASP F 348 68.93 60.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GLY F 401 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY E 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY F 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-0260 RELATED DB: EMDB REMARK 900 RELATED ID: 6VI3 RELATED DB: PDB DBREF 6VI3 E 304 380 UNP P10636 TAU_HUMAN 275 351 DBREF 6VI3 F 304 380 UNP P10636 TAU_HUMAN 275 351 SEQRES 1 E 77 GLY SER VAL GLN ILE VAL TYR LYS PRO VAL ASP LEU SER SEQRES 2 E 77 LYS VAL THR SER LYS CYS GLY SER LEU GLY ASN ILE HIS SEQRES 3 E 77 HIS LYS PRO GLY GLY GLY GLN VAL GLU VAL LYS SER GLU SEQRES 4 E 77 LYS LEU ASP PHE LYS ASP ARG VAL GLN SER LYS ILE GLY SEQRES 5 E 77 SER LEU ASP ASN ILE THR HIS VAL PRO GLY GLY GLY ASN SEQRES 6 E 77 LYS LYS ILE GLU THR HIS LYS LEU THR PHE ARG GLU SEQRES 1 F 77 GLY SER VAL GLN ILE VAL TYR LYS PRO VAL ASP LEU SER SEQRES 2 F 77 LYS VAL THR SER LYS CYS GLY SER LEU GLY ASN ILE HIS SEQRES 3 F 77 HIS LYS PRO GLY GLY GLY GLN VAL GLU VAL LYS SER GLU SEQRES 4 F 77 LYS LEU ASP PHE LYS ASP ARG VAL GLN SER LYS ILE GLY SEQRES 5 F 77 SER LEU ASP ASN ILE THR HIS VAL PRO GLY GLY GLY ASN SEQRES 6 F 77 LYS LYS ILE GLU THR HIS LYS LEU THR PHE ARG GLU HET GLY E 401 4 HET GLY F 401 4 HETNAM GLY GLYCINE FORMUL 3 GLY 2(C2 H5 N O2) LINK C GLY E 401 N GLY F 401 1555 1555 1.33 SITE 1 AC1 2 LYS E 317 GLY F 401 SITE 1 AC2 3 LYS E 317 GLY E 401 LYS F 317 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000