HEADER IMMUNE SYSTEM 13-JAN-20 6VIK TITLE CRYSTAL STRUCTURE OF MOUSE XM RABL3 IN COMPLEX WITH GTPGAMMSS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAB-LIKE PROTEIN 3; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RABL3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IMMUNE SYSTEM, SMALL GTPASE EXPDTA X-RAY DIFFRACTION AUTHOR L.SU,D.R.TOMCHICK,B.BEUTLER REVDAT 3 06-MAR-24 6VIK 1 REMARK REVDAT 2 29-APR-20 6VIK 1 JRNL REVDAT 1 08-APR-20 6VIK 0 JRNL AUTH X.ZHONG,L.SU,Y.YANG,E.NAIR-GILL,M.TANG,P.ANDERTON,X.LI, JRNL AUTH 2 J.WANG,X.ZHAN,D.R.TOMCHICK,C.A.BRAUTIGAM,E.M.Y.MORESCO, JRNL AUTH 3 J.H.CHOI,B.BEUTLER JRNL TITL GENETIC AND STRUCTURAL STUDIES OF RABL3 REVEAL AN ESSENTIAL JRNL TITL 2 ROLE IN LYMPHOID DEVELOPMENT AND FUNCTION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 8563 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 32220963 JRNL DOI 10.1073/PNAS.2000703117 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 3 NUMBER OF REFLECTIONS : 25878 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.720 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8660 - 4.0973 1.00 2102 176 0.1864 0.1958 REMARK 3 2 4.0973 - 3.2524 1.00 1951 164 0.1867 0.2294 REMARK 3 3 3.2524 - 2.8413 1.00 1904 159 0.2043 0.2565 REMARK 3 4 2.8413 - 2.5815 1.00 1876 158 0.2153 0.2331 REMARK 3 5 2.5815 - 2.3965 1.00 1879 156 0.2116 0.2118 REMARK 3 6 2.3965 - 2.2552 1.00 1850 156 0.2044 0.2220 REMARK 3 7 2.2552 - 2.1423 1.00 1868 154 0.2038 0.2509 REMARK 3 8 2.1423 - 2.0490 1.00 1816 152 0.2185 0.2487 REMARK 3 9 2.0490 - 1.9701 1.00 1833 154 0.2201 0.2569 REMARK 3 10 1.9701 - 1.9022 1.00 1843 154 0.2265 0.2353 REMARK 3 11 1.9022 - 1.8427 0.99 1818 152 0.2311 0.2945 REMARK 3 12 1.8427 - 1.7900 0.82 1483 125 0.2581 0.2835 REMARK 3 13 1.7900 - 1.7429 0.54 981 81 0.2643 0.2820 REMARK 3 14 1.7429 - 1.7004 0.38 676 57 0.2994 0.3338 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3342 -16.4437 10.1910 REMARK 3 T TENSOR REMARK 3 T11: 0.0592 T22: 0.0972 REMARK 3 T33: 0.0761 T12: -0.0088 REMARK 3 T13: -0.0286 T23: -0.0793 REMARK 3 L TENSOR REMARK 3 L11: 0.2230 L22: 0.2912 REMARK 3 L33: 0.5572 L12: -0.1869 REMARK 3 L13: -0.3063 L23: 0.1218 REMARK 3 S TENSOR REMARK 3 S11: 0.0339 S12: -0.0199 S13: 0.0354 REMARK 3 S21: 0.1095 S22: -0.0334 S23: -0.0057 REMARK 3 S31: -0.0940 S32: -0.0216 S33: -0.0596 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 19 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5199 -21.2879 12.1345 REMARK 3 T TENSOR REMARK 3 T11: 0.0278 T22: 0.0682 REMARK 3 T33: 0.0703 T12: 0.0057 REMARK 3 T13: -0.0238 T23: -0.0903 REMARK 3 L TENSOR REMARK 3 L11: 0.0981 L22: 0.4992 REMARK 3 L33: 0.6207 L12: 0.1176 REMARK 3 L13: -0.0140 L23: 0.2568 REMARK 3 S TENSOR REMARK 3 S11: 0.0108 S12: 0.0343 S13: -0.0345 REMARK 3 S21: -0.0311 S22: 0.0190 S23: -0.0225 REMARK 3 S31: -0.0018 S32: 0.0123 S33: 0.0502 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 51 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4913 -11.0047 3.0308 REMARK 3 T TENSOR REMARK 3 T11: 0.1851 T22: 0.1363 REMARK 3 T33: 0.0417 T12: 0.0392 REMARK 3 T13: -0.0019 T23: -0.0391 REMARK 3 L TENSOR REMARK 3 L11: 1.8319 L22: 1.7713 REMARK 3 L33: 3.3112 L12: 0.6908 REMARK 3 L13: -0.9108 L23: -1.1216 REMARK 3 S TENSOR REMARK 3 S11: 0.0008 S12: 0.3098 S13: 0.0963 REMARK 3 S21: -0.3024 S22: 0.0186 S23: -0.0681 REMARK 3 S31: -0.1917 S32: 0.0164 S33: -0.0596 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 67 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6917 -25.2904 20.9628 REMARK 3 T TENSOR REMARK 3 T11: 0.2221 T22: 0.3544 REMARK 3 T33: 0.3015 T12: -0.0477 REMARK 3 T13: 0.0213 T23: -0.0812 REMARK 3 L TENSOR REMARK 3 L11: 0.0876 L22: 0.0953 REMARK 3 L33: 0.0138 L12: 0.0022 REMARK 3 L13: -0.0074 L23: -0.0202 REMARK 3 S TENSOR REMARK 3 S11: 0.1971 S12: -0.5465 S13: 0.0669 REMARK 3 S21: 0.5493 S22: -0.1939 S23: 0.5539 REMARK 3 S31: 0.1947 S32: -0.4502 S33: -0.0035 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 82 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3188 -14.0667 16.5526 REMARK 3 T TENSOR REMARK 3 T11: 0.1169 T22: 0.1905 REMARK 3 T33: 0.1428 T12: 0.0830 REMARK 3 T13: -0.0261 T23: -0.0962 REMARK 3 L TENSOR REMARK 3 L11: 0.1655 L22: 0.9016 REMARK 3 L33: 2.2370 L12: 0.3288 REMARK 3 L13: -0.5873 L23: -1.3627 REMARK 3 S TENSOR REMARK 3 S11: 0.0288 S12: -0.0426 S13: 0.0665 REMARK 3 S21: 0.0988 S22: 0.0289 S23: 0.0843 REMARK 3 S31: -0.1513 S32: -0.0399 S33: -0.0603 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 90 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0200 -30.2404 6.9567 REMARK 3 T TENSOR REMARK 3 T11: 0.0603 T22: 0.1891 REMARK 3 T33: 0.1615 T12: -0.0197 REMARK 3 T13: -0.0012 T23: -0.1314 REMARK 3 L TENSOR REMARK 3 L11: 1.0939 L22: 2.5407 REMARK 3 L33: 0.8207 L12: -0.1541 REMARK 3 L13: 0.2564 L23: 0.9257 REMARK 3 S TENSOR REMARK 3 S11: 0.0457 S12: 0.0592 S13: -0.1529 REMARK 3 S21: 0.0898 S22: -0.1123 S23: 0.0883 REMARK 3 S31: 0.0936 S32: -0.1119 S33: 0.0418 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 100 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7512 -28.5854 10.0855 REMARK 3 T TENSOR REMARK 3 T11: 0.0841 T22: 0.3409 REMARK 3 T33: 0.2361 T12: -0.0570 REMARK 3 T13: -0.0080 T23: -0.1795 REMARK 3 L TENSOR REMARK 3 L11: 2.3611 L22: 2.6962 REMARK 3 L33: 1.6367 L12: -1.3169 REMARK 3 L13: 0.2295 L23: 0.8892 REMARK 3 S TENSOR REMARK 3 S11: 0.0452 S12: -0.0126 S13: -0.1424 REMARK 3 S21: -0.0044 S22: -0.1398 S23: 0.2345 REMARK 3 S31: 0.0953 S32: -0.2179 S33: 0.0756 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 113 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3242 -28.5785 3.6788 REMARK 3 T TENSOR REMARK 3 T11: 0.0440 T22: 0.2151 REMARK 3 T33: 0.1674 T12: 0.0111 REMARK 3 T13: -0.0223 T23: -0.1521 REMARK 3 L TENSOR REMARK 3 L11: 1.8806 L22: 1.4285 REMARK 3 L33: 2.0145 L12: 0.1868 REMARK 3 L13: 0.3179 L23: 0.5093 REMARK 3 S TENSOR REMARK 3 S11: 0.0321 S12: 0.0972 S13: -0.1127 REMARK 3 S21: -0.0774 S22: -0.1274 S23: 0.1398 REMARK 3 S31: 0.0194 S32: -0.0907 S33: 0.0621 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 154 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8613 -35.5553 -3.6190 REMARK 3 T TENSOR REMARK 3 T11: 0.1782 T22: 0.3245 REMARK 3 T33: 0.3024 T12: 0.0145 REMARK 3 T13: -0.0756 T23: -0.2212 REMARK 3 L TENSOR REMARK 3 L11: 1.9148 L22: 1.5717 REMARK 3 L33: 1.9786 L12: -0.1485 REMARK 3 L13: 0.0754 L23: 0.4591 REMARK 3 S TENSOR REMARK 3 S11: 0.0012 S12: 0.1837 S13: -0.2977 REMARK 3 S21: -0.0867 S22: 0.0645 S23: -0.0228 REMARK 3 S31: 0.2270 S32: 0.1425 S33: -0.1120 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 172 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8709 -29.3649 0.8542 REMARK 3 T TENSOR REMARK 3 T11: 0.0691 T22: 0.1957 REMARK 3 T33: 0.2073 T12: 0.0188 REMARK 3 T13: -0.0275 T23: -0.1376 REMARK 3 L TENSOR REMARK 3 L11: 5.4540 L22: 2.6719 REMARK 3 L33: 0.8109 L12: -3.1077 REMARK 3 L13: 1.1443 L23: -0.0615 REMARK 3 S TENSOR REMARK 3 S11: 0.0768 S12: 0.1574 S13: 0.0351 REMARK 3 S21: -0.0908 S22: -0.1099 S23: -0.0114 REMARK 3 S31: 0.0081 S32: -0.0043 S33: 0.0206 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 183 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7060 -28.3887 -1.3005 REMARK 3 T TENSOR REMARK 3 T11: 0.1338 T22: 0.2516 REMARK 3 T33: 0.2527 T12: 0.0025 REMARK 3 T13: 0.0528 T23: -0.1431 REMARK 3 L TENSOR REMARK 3 L11: 1.5967 L22: 3.5096 REMARK 3 L33: 5.2508 L12: 1.1717 REMARK 3 L13: -0.6361 L23: -1.9523 REMARK 3 S TENSOR REMARK 3 S11: 0.0470 S12: 0.0658 S13: -0.0346 REMARK 3 S21: -0.0708 S22: -0.0241 S23: -0.0832 REMARK 3 S31: 0.0763 S32: 0.0945 S33: -0.0201 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 191 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.7636 -15.9510 -1.2260 REMARK 3 T TENSOR REMARK 3 T11: 0.2389 T22: 0.2106 REMARK 3 T33: 0.0635 T12: 0.0623 REMARK 3 T13: -0.0629 T23: -0.0677 REMARK 3 L TENSOR REMARK 3 L11: 1.5046 L22: 3.5717 REMARK 3 L33: 3.2078 L12: -0.3462 REMARK 3 L13: 0.1105 L23: 1.2443 REMARK 3 S TENSOR REMARK 3 S11: 0.0379 S12: 0.0747 S13: 0.0516 REMARK 3 S21: -0.2121 S22: -0.1490 S23: 0.1657 REMARK 3 S31: -0.2898 S32: -0.2589 S33: 0.1008 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VIK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246457. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28484 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 33.70 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 23.40 REMARK 200 R MERGE FOR SHELL (I) : 5.36200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE TRIBASIC REMARK 280 DIHYDRATE PH 5.0, 16% EG 1000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 149.54067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.77033 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 112.15550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 37.38517 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 186.92583 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 149.54067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 74.77033 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 37.38517 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 112.15550 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 186.92583 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 476 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -28 REMARK 465 SER B -27 REMARK 465 TYR B -26 REMARK 465 TYR B -25 REMARK 465 HIS B -24 REMARK 465 HIS B -23 REMARK 465 HIS B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 ASP B -18 REMARK 465 TYR B -17 REMARK 465 ASP B -16 REMARK 465 ILE B -15 REMARK 465 PRO B -14 REMARK 465 THR B -13 REMARK 465 THR B -12 REMARK 465 GLU B -11 REMARK 465 ASN B -10 REMARK 465 LEU B -9 REMARK 465 TYR B -8 REMARK 465 PHE B -7 REMARK 465 GLN B -6 REMARK 465 GLY B -5 REMARK 465 ALA B -4 REMARK 465 MET B -3 REMARK 465 ASP B -2 REMARK 465 PRO B -1 REMARK 465 GLU B 0 REMARK 465 GLY B 72 REMARK 465 SER B 73 REMARK 465 ALA B 74 REMARK 465 SER B 75 REMARK 465 SER B 76 REMARK 465 VAL B 77 REMARK 465 LEU B 114 REMARK 465 ASN B 115 REMARK 465 ARG B 116 REMARK 465 ASP B 117 REMARK 465 ALA B 118 REMARK 465 VAL B 119 REMARK 465 PRO B 120 REMARK 465 THR B 121 REMARK 465 GLY B 122 REMARK 465 VAL B 123 REMARK 465 LEU B 124 REMARK 465 VAL B 125 REMARK 465 THR B 126 REMARK 465 ASN B 127 REMARK 465 GLY B 128 REMARK 465 ASP B 129 REMARK 465 TYR B 130 REMARK 465 ASP B 131 REMARK 465 ARG B 132 REMARK 465 GLU B 133 REMARK 465 GLN B 134 REMARK 465 PHE B 135 REMARK 465 ALA B 136 REMARK 465 ASP B 137 REMARK 465 TYR B 208 REMARK 465 PHE B 209 REMARK 465 PHE B 210 REMARK 465 ARG B 211 REMARK 465 GLU B 212 REMARK 465 GLY B 213 REMARK 465 ASN B 214 REMARK 465 GLN B 215 REMARK 465 ILE B 216 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 66 OD2 REMARK 620 2 GSP B 302 O1B 105.3 REMARK 620 3 GSP B 302 O2G 174.1 73.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GSP B 302 DBREF 6VIK B 2 216 UNP Q9D4V7 RABL3_MOUSE 2 216 SEQADV 6VIK MET B -28 UNP Q9D4V7 INITIATING METHIONINE SEQADV 6VIK SER B -27 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIK TYR B -26 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIK TYR B -25 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIK HIS B -24 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIK HIS B -23 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIK HIS B -22 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIK HIS B -21 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIK HIS B -20 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIK HIS B -19 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIK ASP B -18 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIK TYR B -17 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIK ASP B -16 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIK ILE B -15 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIK PRO B -14 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIK THR B -13 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIK THR B -12 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIK GLU B -11 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIK ASN B -10 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIK LEU B -9 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIK TYR B -8 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIK PHE B -7 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIK GLN B -6 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIK GLY B -5 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIK ALA B -4 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIK MET B -3 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIK ASP B -2 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIK PRO B -1 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIK GLU B 0 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIK PHE B 1 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIK B UNP Q9D4V7 VAL 43 DELETION SEQADV 6VIK B UNP Q9D4V7 ASP 44 DELETION SEQADV 6VIK B UNP Q9D4V7 ILE 45 DELETION SEQADV 6VIK B UNP Q9D4V7 ARG 46 DELETION SEQRES 1 B 241 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 B 241 ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA MET SEQRES 3 B 241 ASP PRO GLU PHE ALA SER LEU ASP ARG VAL LYS VAL LEU SEQRES 4 B 241 VAL LEU GLY ASP SER GLY VAL GLY LYS SER SER LEU VAL SEQRES 5 B 241 HIS LEU LEU CYS HIS ASN GLN VAL LEU GLY ASN PRO SER SEQRES 6 B 241 TRP THR VAL GLY CYS SER VAL HIS ASP TYR LYS GLU GLY SEQRES 7 B 241 THR PRO GLU GLU LYS THR TYR TYR ILE GLU LEU TRP ASP SEQRES 8 B 241 VAL GLY GLY SER VAL GLY SER ALA SER SER VAL LYS SER SEQRES 9 B 241 THR ARG ALA VAL PHE TYR ASN SER VAL ASN GLY ILE ILE SEQRES 10 B 241 LEU VAL HIS ASP LEU THR ASN LYS LYS SER SER GLN ASN SEQRES 11 B 241 LEU TYR ARG TRP SER LEU GLU VAL LEU ASN ARG ASP ALA SEQRES 12 B 241 VAL PRO THR GLY VAL LEU VAL THR ASN GLY ASP TYR ASP SEQRES 13 B 241 ARG GLU GLN PHE ALA ASP ASN GLN ILE PRO LEU LEU VAL SEQRES 14 B 241 ILE GLY THR LYS LEU ASP GLN ILE HIS GLU THR LYS ARG SEQRES 15 B 241 HIS GLU VAL LEU ILE ARG THR ALA PHE LEU ALA GLU ASP SEQRES 16 B 241 PHE ASN ALA GLU GLU ILE ASN LEU ASP CYS THR ASN PRO SEQRES 17 B 241 ARG SER SER ALA ALA GLY SER SER ASN ALA VAL LYS LEU SEQRES 18 B 241 SER ARG PHE PHE ASP LYS VAL ILE GLU LYS ARG TYR PHE SEQRES 19 B 241 PHE ARG GLU GLY ASN GLN ILE HET MG B 301 1 HET GSP B 302 32 HETNAM MG MAGNESIUM ION HETNAM GSP 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE FORMUL 2 MG MG 2+ FORMUL 3 GSP C10 H16 N5 O13 P3 S FORMUL 4 HOH *97(H2 O) HELIX 1 AA1 GLY B 18 CYS B 27 1 10 HELIX 2 AA2 ARG B 81 TYR B 85 5 5 HELIX 3 AA3 ASN B 99 ASN B 105 1 7 HELIX 4 AA4 ASN B 105 GLU B 112 1 8 HELIX 5 AA5 LYS B 148 ILE B 152 5 5 HELIX 6 AA6 HIS B 153 PHE B 171 1 19 HELIX 7 AA7 ASN B 182 ALA B 187 5 6 HELIX 8 AA8 SER B 190 ARG B 207 1 18 SHEET 1 AA1 7 VAL B 31 GLY B 33 0 SHEET 2 AA1 7 THR B 38 TYR B 50 -1 O VAL B 39 N LEU B 32 SHEET 3 AA1 7 LYS B 58 ASP B 66 -1 O LYS B 58 N TYR B 50 SHEET 4 AA1 7 LYS B 8 LEU B 12 1 N VAL B 11 O TRP B 65 SHEET 5 AA1 7 GLY B 90 ASP B 96 1 O VAL B 94 N LEU B 12 SHEET 6 AA1 7 LEU B 142 THR B 147 1 O LEU B 143 N LEU B 93 SHEET 7 AA1 7 GLU B 174 ASN B 177 1 O ILE B 176 N GLY B 146 LINK OD2 ASP B 66 MG MG B 301 1555 1555 2.62 LINK MG MG B 301 O1B GSP B 302 1555 1555 2.52 LINK MG MG B 301 O2G GSP B 302 1555 1555 2.74 SITE 1 AC1 2 ASP B 66 GSP B 302 SITE 1 AC2 14 SER B 15 GLY B 16 VAL B 17 GLY B 18 SITE 2 AC2 14 LYS B 19 SER B 20 SER B 21 LYS B 148 SITE 3 AC2 14 ASP B 150 ASP B 179 CYS B 180 MG B 301 SITE 4 AC2 14 HOH B 417 HOH B 421 CRYST1 61.117 61.117 224.311 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016362 0.009447 0.000000 0.00000 SCALE2 0.000000 0.018893 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004458 0.00000