HEADER LIPID BINDING PROTEIN 13-JAN-20 6VIS TITLE THE CRYSTAL STRUCTURE OF DOMAIN-SWAPPED TRIMER TITLE 2 Q108K:K40D:T53A:R58L:Q38F:Q4F:V62E VARIANT OF HCRBPII COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOL-BINDING PROTEIN 2; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: CELLULAR RETINOL-BINDING PROTEIN II,CRBP-II; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBP2, CRBP2; SOURCE 6 EXPRESSION_SYSTEM: BACTERIAL EXPRESSION VECTOR PET-11A; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1944663 KEYWDS DOMAIN SWAPPED TRIMER, ILBP, LIPID BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.GHANBARPOUR,J.GEIGER REVDAT 3 11-OCT-23 6VIS 1 REMARK REVDAT 2 02-DEC-20 6VIS 1 JRNL REVDAT 1 09-SEP-20 6VIS 0 JRNL AUTH A.GHANBARPOUR,E.M.SANTOS,C.PINGER,Z.ASSAR,S.HOSSAINI NASR, JRNL AUTH 2 C.VASILEIOU,D.SPENCE,B.BORHAN,J.H.GEIGER JRNL TITL HUMAN CELLULAR RETINOL BINDING PROTEIN II FORMS A JRNL TITL 2 DOMAIN-SWAPPED TRIMER REPRESENTING A NOVEL FOLD AND A NEW JRNL TITL 3 TEMPLATE FOR PROTEIN ENGINEERING. JRNL REF CHEMBIOCHEM V. 21 3192 2020 JRNL REFN ESSN 1439-7633 JRNL PMID 32608180 JRNL DOI 10.1002/CBIC.202000405 REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 10792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1081 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1300 - 5.5700 1.00 1312 150 0.2357 0.2714 REMARK 3 2 5.5700 - 4.4200 1.00 1244 138 0.1902 0.2382 REMARK 3 3 4.4200 - 3.8700 1.00 1221 131 0.1966 0.2593 REMARK 3 4 3.8700 - 3.5100 1.00 1219 132 0.2178 0.2960 REMARK 3 5 3.5100 - 3.2600 1.00 1193 127 0.2643 0.3503 REMARK 3 6 3.2600 - 3.0700 1.00 1184 142 0.2788 0.3710 REMARK 3 7 3.0700 - 2.9200 1.00 1201 128 0.2940 0.4227 REMARK 3 8 2.9200 - 2.7900 0.95 1137 133 0.3394 0.4667 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.522 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.461 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3318 REMARK 3 ANGLE : 0.480 4470 REMARK 3 CHIRALITY : 0.040 480 REMARK 3 PLANARITY : 0.002 575 REMARK 3 DIHEDRAL : 16.341 1947 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 51.7406 24.9915 30.3394 REMARK 3 T TENSOR REMARK 3 T11: 0.2948 T22: 0.3608 REMARK 3 T33: 0.3687 T12: -0.0246 REMARK 3 T13: -0.0263 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.3711 L22: 0.9420 REMARK 3 L33: 0.7780 L12: -0.4970 REMARK 3 L13: -0.0341 L23: -0.3225 REMARK 3 S TENSOR REMARK 3 S11: -0.0472 S12: -0.0046 S13: 0.0428 REMARK 3 S21: 0.1648 S22: 0.0963 S23: -0.0555 REMARK 3 S31: -0.0332 S32: -0.0012 S33: -0.0576 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 1 THROUGH 20 OR REMARK 3 (RESID 21 THROUGH 22 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 23 THROUGH 25 OR (RESID 26 THROUGH REMARK 3 28 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 29 THROUGH REMARK 3 34 OR RESID 36 THROUGH 57 OR (RESID 58 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 59 OR (RESID 60 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 61 THROUGH 97 OR REMARK 3 (RESID 98 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 99 REMARK 3 THROUGH 100 OR (RESID 101 THROUGH 103 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 104 THROUGH 126 OR REMARK 3 (RESID 127 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 128 REMARK 3 THROUGH 133)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 1 THROUGH 20 OR REMARK 3 (RESID 21 THROUGH 22 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 23 THROUGH 26 OR (RESID 27 THROUGH REMARK 3 28 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 29 THROUGH REMARK 3 34 OR RESID 36 THROUGH 57 OR (RESID 58 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 59 OR (RESID 60 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 61 THROUGH 126 REMARK 3 OR (RESID 127 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 128 THROUGH 130 OR (RESID 131 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 132 OR (RESID 133 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )))) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 1 THROUGH 20 OR REMARK 3 (RESID 21 THROUGH 22 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 23 THROUGH 25 OR (RESID 26 THROUGH REMARK 3 28 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 29 THROUGH REMARK 3 34 OR RESID 36 THROUGH 57 OR (RESID 58 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 59 OR (RESID 60 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 61 THROUGH 97 OR REMARK 3 (RESID 98 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 99 REMARK 3 THROUGH 100 OR (RESID 101 THROUGH 103 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 104 THROUGH 126 OR REMARK 3 (RESID 127 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 128 REMARK 3 THROUGH 133)) REMARK 3 SELECTION : (CHAIN 'C' AND (RESID 1 THROUGH 25 OR REMARK 3 (RESID 26 THROUGH 28 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 29 THROUGH 34 OR RESID 36 THROUGH REMARK 3 97 OR (RESID 98 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 99 THROUGH 100 OR (RESID 101 THROUGH 103 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 104 THROUGH 130 REMARK 3 OR (RESID 131 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 132 OR (RESID 133 AND (NAME N OR NAME CA REMARK 3 OR NAME C OR NAME O OR NAME CB )))) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VIS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000245777. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10793 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.788 REMARK 200 RESOLUTION RANGE LOW (A) : 48.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.14800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.81900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2RCT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, SODIUM ACETATE, AMMONIUM REMARK 280 ACETATE, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.51550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.73700 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.51550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 54.73700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 131 CG CD CE NZ REMARK 470 LYS A 133 CG CD CE NZ REMARK 470 ASP B 26 CG OD1 OD2 REMARK 470 LYS B 98 CG CD CE NZ REMARK 470 LYS B 101 CG CD CE NZ REMARK 470 GLU B 102 CG CD OE1 OE2 REMARK 470 ASN B 103 CG OD1 ND2 REMARK 470 LYS C 21 CG CD CE NZ REMARK 470 PHE C 27 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU C 58 CG CD1 CD2 REMARK 470 TYR C 60 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG C 127 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 75 74.21 -68.73 REMARK 500 SER A 76 -19.26 178.85 REMARK 500 LEU A 77 -90.16 -127.17 REMARK 500 ARG B 35 -152.56 -78.15 REMARK 500 LEU B 36 154.51 64.69 REMARK 500 TYR B 60 127.01 67.20 REMARK 500 LEU B 77 -89.87 -125.57 REMARK 500 LYS C 75 -179.11 -66.76 REMARK 500 SER C 76 -16.48 67.34 REMARK 500 LEU C 77 -91.73 -125.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 201 DBREF 6VIS A 1 133 UNP P50120 RET2_HUMAN 2 134 DBREF 6VIS B 1 133 UNP P50120 RET2_HUMAN 2 134 DBREF 6VIS C 1 133 UNP P50120 RET2_HUMAN 2 134 SEQADV 6VIS PHE A 4 UNP P50120 GLN 5 ENGINEERED MUTATION SEQADV 6VIS PHE A 38 UNP P50120 GLN 39 ENGINEERED MUTATION SEQADV 6VIS ASP A 40 UNP P50120 LYS 41 ENGINEERED MUTATION SEQADV 6VIS ALA A 53 UNP P50120 THR 54 ENGINEERED MUTATION SEQADV 6VIS LEU A 58 UNP P50120 ARG 59 ENGINEERED MUTATION SEQADV 6VIS GLU A 62 UNP P50120 VAL 63 ENGINEERED MUTATION SEQADV 6VIS LYS A 108 UNP P50120 GLN 109 ENGINEERED MUTATION SEQADV 6VIS PHE B 4 UNP P50120 GLN 5 ENGINEERED MUTATION SEQADV 6VIS PHE B 38 UNP P50120 GLN 39 ENGINEERED MUTATION SEQADV 6VIS ASP B 40 UNP P50120 LYS 41 ENGINEERED MUTATION SEQADV 6VIS ALA B 53 UNP P50120 THR 54 ENGINEERED MUTATION SEQADV 6VIS LEU B 58 UNP P50120 ARG 59 ENGINEERED MUTATION SEQADV 6VIS GLU B 62 UNP P50120 VAL 63 ENGINEERED MUTATION SEQADV 6VIS LYS B 108 UNP P50120 GLN 109 ENGINEERED MUTATION SEQADV 6VIS PHE C 4 UNP P50120 GLN 5 ENGINEERED MUTATION SEQADV 6VIS PHE C 38 UNP P50120 GLN 39 ENGINEERED MUTATION SEQADV 6VIS ASP C 40 UNP P50120 LYS 41 ENGINEERED MUTATION SEQADV 6VIS ALA C 53 UNP P50120 THR 54 ENGINEERED MUTATION SEQADV 6VIS LEU C 58 UNP P50120 ARG 59 ENGINEERED MUTATION SEQADV 6VIS GLU C 62 UNP P50120 VAL 63 ENGINEERED MUTATION SEQADV 6VIS LYS C 108 UNP P50120 GLN 109 ENGINEERED MUTATION SEQRES 1 A 133 THR ARG ASP PHE ASN GLY THR TRP GLU MET GLU SER ASN SEQRES 2 A 133 GLU ASN PHE GLU GLY TYR MET LYS ALA LEU ASP ILE ASP SEQRES 3 A 133 PHE ALA THR ARG LYS ILE ALA VAL ARG LEU THR PHE THR SEQRES 4 A 133 ASP VAL ILE ASP GLN ASP GLY ASP ASN PHE LYS THR LYS SEQRES 5 A 133 ALA THR SER THR PHE LEU ASN TYR ASP GLU ASP PHE THR SEQRES 6 A 133 VAL GLY VAL GLU PHE ASP GLU TYR THR LYS SER LEU ASP SEQRES 7 A 133 ASN ARG HIS VAL LYS ALA LEU VAL THR TRP GLU GLY ASP SEQRES 8 A 133 VAL LEU VAL CYS VAL GLN LYS GLY GLU LYS GLU ASN ARG SEQRES 9 A 133 GLY TRP LYS LYS TRP ILE GLU GLY ASP LYS LEU TYR LEU SEQRES 10 A 133 GLU LEU THR CYS GLY ASP GLN VAL CYS ARG GLN VAL PHE SEQRES 11 A 133 LYS LYS LYS SEQRES 1 B 133 THR ARG ASP PHE ASN GLY THR TRP GLU MET GLU SER ASN SEQRES 2 B 133 GLU ASN PHE GLU GLY TYR MET LYS ALA LEU ASP ILE ASP SEQRES 3 B 133 PHE ALA THR ARG LYS ILE ALA VAL ARG LEU THR PHE THR SEQRES 4 B 133 ASP VAL ILE ASP GLN ASP GLY ASP ASN PHE LYS THR LYS SEQRES 5 B 133 ALA THR SER THR PHE LEU ASN TYR ASP GLU ASP PHE THR SEQRES 6 B 133 VAL GLY VAL GLU PHE ASP GLU TYR THR LYS SER LEU ASP SEQRES 7 B 133 ASN ARG HIS VAL LYS ALA LEU VAL THR TRP GLU GLY ASP SEQRES 8 B 133 VAL LEU VAL CYS VAL GLN LYS GLY GLU LYS GLU ASN ARG SEQRES 9 B 133 GLY TRP LYS LYS TRP ILE GLU GLY ASP LYS LEU TYR LEU SEQRES 10 B 133 GLU LEU THR CYS GLY ASP GLN VAL CYS ARG GLN VAL PHE SEQRES 11 B 133 LYS LYS LYS SEQRES 1 C 133 THR ARG ASP PHE ASN GLY THR TRP GLU MET GLU SER ASN SEQRES 2 C 133 GLU ASN PHE GLU GLY TYR MET LYS ALA LEU ASP ILE ASP SEQRES 3 C 133 PHE ALA THR ARG LYS ILE ALA VAL ARG LEU THR PHE THR SEQRES 4 C 133 ASP VAL ILE ASP GLN ASP GLY ASP ASN PHE LYS THR LYS SEQRES 5 C 133 ALA THR SER THR PHE LEU ASN TYR ASP GLU ASP PHE THR SEQRES 6 C 133 VAL GLY VAL GLU PHE ASP GLU TYR THR LYS SER LEU ASP SEQRES 7 C 133 ASN ARG HIS VAL LYS ALA LEU VAL THR TRP GLU GLY ASP SEQRES 8 C 133 VAL LEU VAL CYS VAL GLN LYS GLY GLU LYS GLU ASN ARG SEQRES 9 C 133 GLY TRP LYS LYS TRP ILE GLU GLY ASP LYS LEU TYR LEU SEQRES 10 C 133 GLU LEU THR CYS GLY ASP GLN VAL CYS ARG GLN VAL PHE SEQRES 11 C 133 LYS LYS LYS HET GOL A 201 6 HET GOL A 202 6 HET GOL B 201 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 HOH *33(H2 O) HELIX 1 AA1 ASN A 15 LEU A 23 1 9 HELIX 2 AA2 ASP A 26 VAL A 34 1 9 HELIX 3 AA3 ASN B 15 LEU B 23 1 9 HELIX 4 AA4 ASP B 26 VAL B 34 1 9 HELIX 5 AA5 ASN C 15 LEU C 23 1 9 HELIX 6 AA6 ASP C 26 VAL C 34 1 9 SHEET 1 AA110 TYR C 60 THR C 65 0 SHEET 2 AA110 ASN A 48 PHE A 57 -1 N PHE A 49 O PHE C 64 SHEET 3 AA110 LEU A 36 ASP A 45 -1 N THR A 39 O THR A 54 SHEET 4 AA110 GLY A 6 GLU A 14 -1 N TRP A 8 O ASP A 40 SHEET 5 AA110 GLN C 124 LYS C 132 -1 O LYS C 131 N GLU A 9 SHEET 6 AA110 LYS C 114 CYS C 121 -1 N LEU C 119 O CYS C 126 SHEET 7 AA110 GLY C 105 GLU C 111 -1 N TRP C 109 O TYR C 116 SHEET 8 AA110 VAL C 92 LYS C 98 -1 N LEU C 93 O LYS C 108 SHEET 9 AA110 HIS C 81 GLU C 89 -1 N THR C 87 O VAL C 94 SHEET 10 AA110 PHE C 70 TYR C 73 -1 N GLU C 72 O VAL C 82 SHEET 1 AA210 TYR A 60 THR A 65 0 SHEET 2 AA210 ASN B 48 THR B 56 -1 O PHE B 49 N PHE A 64 SHEET 3 AA210 THR B 37 ASP B 45 -1 N THR B 39 O THR B 54 SHEET 4 AA210 GLY B 6 GLU B 14 -1 N TRP B 8 O ASP B 40 SHEET 5 AA210 GLN A 124 LYS A 132 -1 N LYS A 131 O GLU B 9 SHEET 6 AA210 LYS A 114 CYS A 121 -1 N LEU A 119 O CYS A 126 SHEET 7 AA210 GLY A 105 GLU A 111 -1 N TRP A 109 O TYR A 116 SHEET 8 AA210 VAL A 92 LYS A 98 -1 N LEU A 93 O LYS A 108 SHEET 9 AA210 HIS A 81 GLU A 89 -1 N THR A 87 O VAL A 94 SHEET 10 AA210 PHE A 70 TYR A 73 -1 N GLU A 72 O VAL A 82 SHEET 1 AA310 ASP B 61 THR B 65 0 SHEET 2 AA310 ASN C 48 PHE C 57 -1 O PHE C 49 N PHE B 64 SHEET 3 AA310 LEU C 36 ASP C 45 -1 N THR C 39 O THR C 54 SHEET 4 AA310 GLY C 6 GLU C 14 -1 N TRP C 8 O ASP C 40 SHEET 5 AA310 GLN B 124 LYS B 132 -1 N LYS B 131 O GLU C 9 SHEET 6 AA310 LYS B 114 CYS B 121 -1 N LEU B 119 O CYS B 126 SHEET 7 AA310 GLY B 105 GLU B 111 -1 N TRP B 109 O TYR B 116 SHEET 8 AA310 VAL B 92 LYS B 98 -1 N LEU B 93 O LYS B 108 SHEET 9 AA310 HIS B 81 GLU B 89 -1 N THR B 87 O VAL B 94 SHEET 10 AA310 PHE B 70 TYR B 73 -1 N GLU B 72 O VAL B 82 SITE 1 AC1 4 MET A 10 GLU A 11 THR A 37 LEU A 58 SITE 1 AC2 3 ARG A 35 LEU A 58 LYS A 75 SITE 1 AC3 8 LYS A 132 LYS A 133 GLY B 6 THR B 7 SITE 2 AC3 8 ASP B 24 ILE B 25 ASP B 26 HOH B 305 CRYST1 37.123 101.031 109.474 90.00 90.00 90.00 P 2 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026937 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009898 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009135 0.00000