HEADER PROTEIN TRANSPORT 14-JAN-20 6VJ5 TITLE STRUCTURE OF PE25-PPE41(A124L) IN COMPLEX WITH ESPG5 CHAPERONE FROM TITLE 2 THE TYPE VII (ESX-5) SECRETION SYSTEM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PE-PGRS FAMILY PROTEIN PE25; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PPE FAMILY PROTEIN PPE41; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: ESX-5 SECRETION-ASSOCIATED PROTEIN ESPG5; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 ATCC: 25618; SOURCE 7 GENE: PE25, RV2431C, LH57_13295; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VARIANT: ROSETTA(DE3); SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PET-28B; SOURCE 14 MOL_ID: 2; SOURCE 15 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 16 H37RV); SOURCE 17 ORGANISM_TAXID: 83332; SOURCE 18 STRAIN: ATCC 25618 / H37RV; SOURCE 19 ATCC: 25618; SOURCE 20 GENE: PPE41, RV2430C, LH57_13290; SOURCE 21 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 22 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 23 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 24 EXPRESSION_SYSTEM_VARIANT: ROSETTA(DE3); SOURCE 25 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 26 MOL_ID: 3; SOURCE 27 ORGANISM_SCIENTIFIC: MYCOBACTERIUM MARINUM (STRAIN ATCC BAA-535 / SOURCE 28 M); SOURCE 29 ORGANISM_TAXID: 216594; SOURCE 30 STRAIN: ATCC BAA-535 / M; SOURCE 31 ATCC: BAA-535; SOURCE 32 GENE: ESPG5, MMAR_2676; SOURCE 33 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 34 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 35 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 36 EXPRESSION_SYSTEM_VARIANT: ROSETTA(DE3); SOURCE 37 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 38 EXPRESSION_SYSTEM_PLASMID: PCDF-DUET1 KEYWDS CHAPERONE, PROTEIN SECRETION, MYCOBACTERIA, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR Z.A.WILLIAMSON,K.V.KOROTKOV REVDAT 2 11-OCT-23 6VJ5 1 REMARK REVDAT 1 27-JAN-21 6VJ5 0 JRNL AUTH Z.A.WILLIAMSON,N.KOROTKOVA,K.V.KOROTKOV JRNL TITL MOLECULAR BASIS OF DIVERSE SUBSTRATE RECOGNITION BY ESPG5 JRNL TITL 2 CHAPERONE FROM MYCOBACTERIAL ESX-5 TYPE VII SECRETION JRNL TITL 3 SYSTEM. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.150 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 38507 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.170 REMARK 3 FREE R VALUE TEST SET COUNT : 3696 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5050 - 7.1012 0.97 2571 120 0.1928 0.1940 REMARK 3 2 7.1012 - 5.6398 0.98 2584 145 0.2178 0.2075 REMARK 3 3 5.6398 - 4.9279 0.99 2616 135 0.1997 0.2658 REMARK 3 4 4.9279 - 4.4777 0.98 2580 136 0.1712 0.2416 REMARK 3 5 4.4777 - 4.1570 0.99 2634 138 0.1720 0.2543 REMARK 3 6 4.1570 - 3.9121 0.99 2607 121 0.1872 0.2409 REMARK 3 7 3.9121 - 3.7163 0.99 2607 139 0.1894 0.2370 REMARK 3 8 3.7163 - 3.5546 0.99 2575 154 0.1887 0.2463 REMARK 3 9 3.5546 - 3.4178 0.99 2631 149 0.2080 0.2445 REMARK 3 10 3.4178 - 3.2999 0.99 2586 135 0.2225 0.2376 REMARK 3 11 3.2999 - 3.1967 0.99 2624 128 0.2302 0.2800 REMARK 3 12 3.1967 - 3.1054 0.99 2634 139 0.2305 0.3089 REMARK 3 13 3.1054 - 3.0236 0.99 2593 142 0.2246 0.2783 REMARK 3 14 3.0236 - 2.9499 1.00 2647 132 0.2261 0.2367 REMARK 3 15 2.9499 - 2.8828 1.00 2668 102 0.2275 0.2854 REMARK 3 16 2.8828 - 2.8215 1.00 2625 141 0.2324 0.3245 REMARK 3 17 2.8215 - 2.7650 1.00 2570 190 0.2452 0.2821 REMARK 3 18 2.7650 - 2.7129 1.00 2633 140 0.2449 0.2704 REMARK 3 19 2.7129 - 2.6644 1.00 2640 159 0.2544 0.2789 REMARK 3 20 2.6644 - 2.6193 1.00 2563 173 0.2498 0.3223 REMARK 3 21 2.6193 - 2.5770 1.00 2629 135 0.2596 0.3065 REMARK 3 22 2.5770 - 2.5374 1.00 2643 150 0.2704 0.2727 REMARK 3 23 2.5374 - 2.5001 1.00 2633 125 0.2693 0.3092 REMARK 3 24 2.5001 - 2.4648 1.00 2627 157 0.2760 0.2570 REMARK 3 25 2.4648 - 2.4315 1.00 2581 167 0.2956 0.3249 REMARK 3 26 2.4315 - 2.4000 0.98 2559 144 0.2981 0.3538 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4317 REMARK 3 ANGLE : 0.590 5888 REMARK 3 CHIRALITY : 0.041 669 REMARK 3 PLANARITY : 0.003 776 REMARK 3 DIHEDRAL : 14.494 2611 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VJ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246478. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : ROSENBAUM-ROCK DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR: LIQUID NITROGEN REMARK 200 COOLED; SAGITALLY FOCUSING 2ND REMARK 200 CRYSTAL, ROSENBAUM-ROCK VERTICAL REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION JANUARY 10, 2014 REMARK 200 BUILT=20140307 REMARK 200 DATA SCALING SOFTWARE : XSCALE VERSION JANUARY 10, 2014 REMARK 200 BUILT=20140307 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38512 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 45.505 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.844 REMARK 200 R MERGE (I) : 0.15400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.7300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.96400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX 1.8.4_1496 REMARK 200 STARTING MODEL: 4KXR REMARK 200 REMARK 200 REMARK: HEXAGONAL PRISM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: JCSG CORE I SUITE CONDITION C9: 0.2M REMARK 280 POTASSIUM THIOCYANATE, 20% (W/V) PEG3350, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.85667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 113.71333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 85.28500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 142.14167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.42833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.85667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 113.71333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 142.14167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 85.28500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 28.42833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 123 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 307 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 378 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 PHE A 3 REMARK 465 VAL A 4 REMARK 465 ILE A 5 REMARK 465 THR A 6 REMARK 465 ALA A 92 REMARK 465 ASP A 93 REMARK 465 ASN A 94 REMARK 465 ILE A 95 REMARK 465 LYS A 96 REMARK 465 THR A 97 REMARK 465 PHE A 98 REMARK 465 SER A 99 REMARK 465 HIS B 175 REMARK 465 SER B 176 REMARK 465 THR B 177 REMARK 465 VAL B 178 REMARK 465 LEU B 179 REMARK 465 VAL B 180 REMARK 465 ALA B 181 REMARK 465 PRO B 182 REMARK 465 VAL B 183 REMARK 465 SER B 184 REMARK 465 PRO B 185 REMARK 465 SER B 186 REMARK 465 THR B 187 REMARK 465 ALA B 188 REMARK 465 SER B 189 REMARK 465 SER B 190 REMARK 465 ARG B 191 REMARK 465 THR B 192 REMARK 465 ASP B 193 REMARK 465 THR B 194 REMARK 465 MET C 1 REMARK 465 ASP C 2 REMARK 465 GLN C 3 REMARK 465 GLN C 4 REMARK 465 SER C 5 REMARK 465 THR C 6 REMARK 465 ARG C 7 REMARK 465 THR C 260 REMARK 465 ALA C 261 REMARK 465 GLY C 262 REMARK 465 SER C 263 REMARK 465 GLY C 264 REMARK 465 ARG C 299 REMARK 465 VAL C 300 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH12 ARG C 122 O TRP C 294 1.48 REMARK 500 OD1 ASN C 48 HH22 ARG C 57 1.57 REMARK 500 OD1 ASP B 35 O HOH B 301 2.13 REMARK 500 NH1 ARG C 122 O TRP C 294 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 90 62.23 -69.79 REMARK 500 HIS B 2 69.51 -111.26 REMARK 500 TRP B 56 -45.19 -152.22 REMARK 500 VAL C 29 -164.96 -109.72 REMARK 500 ASN C 68 129.47 -37.30 REMARK 500 ASP C 218 67.67 -154.54 REMARK 500 ASP C 232 -103.21 34.20 REMARK 500 GLU C 293 115.95 -38.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 136 DISTANCE = 5.92 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KXR RELATED DB: PDB REMARK 900 STRUCTURE OF THE WILD-TYPE PE25-PPE41-ESPG5 TRIMER DBREF 6VJ5 A 1 99 UNP I6X486 PE25_MYCTU 1 99 DBREF 6VJ5 B 1 194 UNP Q79FE1 PPE41_MYCTU 1 194 DBREF 6VJ5 C 1 300 UNP B2HSU5 ESPG5_MYCMM 1 300 SEQADV 6VJ5 GLY A -1 UNP I6X486 EXPRESSION TAG SEQADV 6VJ5 HIS A 0 UNP I6X486 EXPRESSION TAG SEQADV 6VJ5 LEU B 124 UNP Q79FE1 ALA 124 ENGINEERED MUTATION SEQRES 1 A 101 GLY HIS MET SER PHE VAL ILE THR ASN PRO GLU ALA LEU SEQRES 2 A 101 THR VAL ALA ALA THR GLU VAL ARG ARG ILE ARG ASP ARG SEQRES 3 A 101 ALA ILE GLN SER ASP ALA GLN VAL ALA PRO MET THR THR SEQRES 4 A 101 ALA VAL ARG PRO PRO ALA ALA ASP LEU VAL SER GLU LYS SEQRES 5 A 101 ALA ALA THR PHE LEU VAL GLU TYR ALA ARG LYS TYR ARG SEQRES 6 A 101 GLN THR ILE ALA ALA ALA ALA VAL VAL LEU GLU GLU PHE SEQRES 7 A 101 ALA HIS ALA LEU THR THR GLY ALA ASP LYS TYR ALA THR SEQRES 8 A 101 ALA GLU ALA ASP ASN ILE LYS THR PHE SER SEQRES 1 B 194 MET HIS PHE GLU ALA TYR PRO PRO GLU VAL ASN SER ALA SEQRES 2 B 194 ASN ILE TYR ALA GLY PRO GLY PRO ASP SER MET LEU ALA SEQRES 3 B 194 ALA ALA ARG ALA TRP ARG SER LEU ASP VAL GLU MET THR SEQRES 4 B 194 ALA VAL GLN ARG SER PHE ASN ARG THR LEU LEU SER LEU SEQRES 5 B 194 MET ASP ALA TRP ALA GLY PRO VAL VAL MET GLN LEU MET SEQRES 6 B 194 GLU ALA ALA LYS PRO PHE VAL ARG TRP LEU THR ASP LEU SEQRES 7 B 194 CYS VAL GLN LEU SER GLU VAL GLU ARG GLN ILE HIS GLU SEQRES 8 B 194 ILE VAL ARG ALA TYR GLU TRP ALA HIS HIS ASP MET VAL SEQRES 9 B 194 PRO LEU ALA GLN ILE TYR ASN ASN ARG ALA GLU ARG GLN SEQRES 10 B 194 ILE LEU ILE ASP ASN ASN LEU LEU GLY GLN PHE THR ALA SEQRES 11 B 194 GLN ILE ALA ASP LEU ASP GLN GLU TYR ASP ASP PHE TRP SEQRES 12 B 194 ASP GLU ASP GLY GLU VAL MET ARG ASP TYR ARG LEU ARG SEQRES 13 B 194 VAL SER ASP ALA LEU SER LYS LEU THR PRO TRP LYS ALA SEQRES 14 B 194 PRO PRO PRO ILE ALA HIS SER THR VAL LEU VAL ALA PRO SEQRES 15 B 194 VAL SER PRO SER THR ALA SER SER ARG THR ASP THR SEQRES 1 C 300 MET ASP GLN GLN SER THR ARG THR ASP ILE THR VAL ASN SEQRES 2 C 300 VAL ASP GLY PHE TRP MET LEU GLN ALA LEU LEU ASP ILE SEQRES 3 C 300 ARG HIS VAL ALA PRO GLU LEU ARG CYS ARG PRO TYR VAL SEQRES 4 C 300 SER THR ASP SER ASN ASP TRP LEU ASN GLU HIS PRO GLY SEQRES 5 C 300 MET ALA VAL MET ARG GLU GLN GLY ILE VAL VAL GLY ASP SEQRES 6 C 300 THR VAL ASN GLU GLN VAL ALA ALA ARG MET ARG VAL LEU SEQRES 7 C 300 ALA ALA PRO ASP LEU GLU VAL VAL ALA LEU LEU SER ARG SEQRES 8 C 300 GLY LYS LEU LEU TYR GLY VAL VAL ASP ASN GLU ASP GLN SEQRES 9 C 300 PRO PRO GLY SER ARG ASP ILE PRO ASP ASN GLU PHE ARG SEQRES 10 C 300 VAL VAL LEU ALA ARG ARG GLY GLN HIS TRP VAL SER ALA SEQRES 11 C 300 VAL ARG VAL GLY ASN ASP ILE THR VAL ASP ASP VAL SER SEQRES 12 C 300 VAL SER ASP SER ALA SER ILE ALA ALA LEU VAL ILE ASP SEQRES 13 C 300 GLY LEU GLU SER ILE HIS HIS ALA ASP PRO ALA ALA ILE SEQRES 14 C 300 ASN ALA VAL ASN VAL PRO LEU GLU GLU MET LEU GLU ALA SEQRES 15 C 300 THR LYS SER TRP GLN GLU SER GLY PHE ASN VAL PHE SER SEQRES 16 C 300 GLY GLY ASP LEU ARG ARG MET GLY ILE SER ALA SER THR SEQRES 17 C 300 VAL ALA ALA LEU GLY GLN ALA LEU SER ASP PRO ALA ALA SEQRES 18 C 300 GLU VAL ALA VAL TYR ALA ARG GLN TYR ARG ASP ASP ALA SEQRES 19 C 300 LYS GLY PRO SER ALA SER VAL LEU SER LEU LYS ASP GLY SEQRES 20 C 300 SER GLY GLY ARG ILE ALA LEU TYR GLN GLN ALA ARG THR SEQRES 21 C 300 ALA GLY SER GLY GLU ALA TRP LEU ALA ILE CYS PRO ALA SEQRES 22 C 300 THR PRO GLN LEU VAL GLN VAL GLY VAL LYS THR VAL LEU SEQRES 23 C 300 ASP THR LEU PRO TYR GLY GLU TRP LYS THR HIS SER ARG SEQRES 24 C 300 VAL HET CL B 201 1 HET CL B 202 1 HETNAM CL CHLORIDE ION FORMUL 4 CL 2(CL 1-) FORMUL 6 HOH *184(H2 O) HELIX 1 AA1 ASN A 7 THR A 37 1 31 HELIX 2 AA2 ASP A 45 ASP A 85 1 41 HELIX 3 AA3 HIS B 2 TYR B 6 5 5 HELIX 4 AA4 PRO B 7 ALA B 17 1 11 HELIX 5 AA5 PRO B 21 ALA B 55 1 35 HELIX 6 AA6 GLY B 58 MET B 103 1 46 HELIX 7 AA7 PRO B 105 ASP B 121 1 17 HELIX 8 AA8 PHE B 128 LYS B 163 1 36 HELIX 9 AA9 VAL C 14 LEU C 24 1 11 HELIX 10 AB1 ALA C 30 ARG C 34 5 5 HELIX 11 AB2 ASN C 44 GLU C 49 5 6 HELIX 12 AB3 HIS C 50 GLN C 59 1 10 HELIX 13 AB4 ASN C 68 ALA C 80 1 13 HELIX 14 AB5 ASP C 146 SER C 160 1 15 HELIX 15 AB6 LEU C 176 SER C 189 1 14 HELIX 16 AB7 GLY C 196 ARG C 201 1 6 HELIX 17 AB8 SER C 205 ASP C 218 1 14 HELIX 18 AB9 THR C 274 ASP C 287 1 14 SHEET 1 AA110 ILE C 10 ASN C 13 0 SHEET 2 AA110 ASP C 136 ASP C 141 -1 O ILE C 137 N VAL C 12 SHEET 3 AA110 HIS C 126 VAL C 133 -1 N SER C 129 O ASP C 140 SHEET 4 AA110 GLU C 115 ARG C 123 -1 N VAL C 119 O ALA C 130 SHEET 5 AA110 LEU C 83 ARG C 91 -1 N VAL C 85 O LEU C 120 SHEET 6 AA110 ALA C 221 ARG C 231 -1 O TYR C 226 N VAL C 86 SHEET 7 AA110 LEU C 242 GLY C 247 -1 O LEU C 242 N VAL C 225 SHEET 8 AA110 GLY C 250 GLN C 256 -1 O LEU C 254 N SER C 243 SHEET 9 AA110 TRP C 267 PRO C 272 -1 O ALA C 269 N TYR C 255 SHEET 10 AA110 VAL C 172 PRO C 175 -1 N VAL C 172 O ILE C 270 SHEET 1 AA2 7 ILE C 10 ASN C 13 0 SHEET 2 AA2 7 ASP C 136 ASP C 141 -1 O ILE C 137 N VAL C 12 SHEET 3 AA2 7 HIS C 126 VAL C 133 -1 N SER C 129 O ASP C 140 SHEET 4 AA2 7 GLU C 115 ARG C 123 -1 N VAL C 119 O ALA C 130 SHEET 5 AA2 7 LEU C 83 ARG C 91 -1 N VAL C 85 O LEU C 120 SHEET 6 AA2 7 ALA C 221 ARG C 231 -1 O TYR C 226 N VAL C 86 SHEET 7 AA2 7 ALA C 234 PRO C 237 -1 O GLY C 236 N GLN C 229 SHEET 1 AA3 2 VAL C 62 VAL C 63 0 SHEET 2 AA3 2 THR C 66 VAL C 67 -1 O THR C 66 N VAL C 63 SITE 1 AC1 2 HOH A 113 ARG B 94 SITE 1 AC2 3 TRP B 74 GLN B 81 LYS B 168 CRYST1 139.020 139.020 170.570 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007193 0.004153 0.000000 0.00000 SCALE2 0.000000 0.008306 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005863 0.00000