HEADER TRANSFERASE 15-JAN-20 6VJC TITLE LMFPPS MUTANT T164Y IN COMPLEX WITH 476A, IPP & CA COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.5.1.1,2.5.1.10; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MAJOR; SOURCE 3 ORGANISM_TAXID: 5664; SOURCE 4 GENE: FPPS, LMJF_22_1360; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FPPS, FARNESYL DIPHOSPHATE SYNTHASE, ISOPRENOID, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MAHESHWARI,Y.S.KIM,S.ARIPIRALA,S.B.GABELLI REVDAT 2 11-OCT-23 6VJC 1 REMARK REVDAT 1 25-NOV-20 6VJC 0 JRNL AUTH S.MAHESHWARI,Y.S.KIM,S.ARIPIRALA,M.MURPHY,L.M.AMZEL, JRNL AUTH 2 S.B.GABELLI JRNL TITL IDENTIFYING STRUCTURAL DETERMINANTS OF PRODUCT SPECIFICITY JRNL TITL 2 IN LEISHMANIA MAJOR FARNESYL DIPHOSPHATE SYNTHASE. JRNL REF BIOCHEMISTRY V. 59 2751 2020 JRNL REFN ISSN 0006-2960 JRNL PMID 32584028 JRNL DOI 10.1021/ACS.BIOCHEM.0C00432 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 64413 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3433 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3716 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.4990 REMARK 3 BIN FREE R VALUE SET COUNT : 199 REMARK 3 BIN FREE R VALUE : 0.4820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5762 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 89 REMARK 3 SOLVENT ATOMS : 698 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.46000 REMARK 3 B22 (A**2) : -0.71000 REMARK 3 B33 (A**2) : 0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.598 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6024 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5592 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8174 ; 1.658 ; 1.650 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12952 ; 1.585 ; 1.581 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 737 ; 5.366 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 302 ;37.587 ;23.113 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1032 ;14.011 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ; 9.464 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 770 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6702 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1256 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6VJC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246472. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67996 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.68800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 4JZX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, 15-25 % PEG 8000, 100-200 REMARK 280 MM CAACETATE, VAPOR DIFFUSION, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.26250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.60100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.94450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.60100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.26250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.94450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 119 -79.14 -116.94 REMARK 500 THR A 120 152.60 81.21 REMARK 500 ASP A 181 113.76 -166.03 REMARK 500 THR A 208 -52.08 -125.37 REMARK 500 TYR A 213 -53.76 -120.42 REMARK 500 VAL B 119 -78.86 -115.02 REMARK 500 THR B 120 157.04 79.94 REMARK 500 THR B 208 -53.12 -126.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 98 OD2 REMARK 620 2 ASP A 102 OD2 84.1 REMARK 620 3 476 A 405 O13 92.6 171.4 REMARK 620 4 476 A 405 O15 83.6 83.0 88.7 REMARK 620 5 HOH A 526 O 88.9 95.0 92.9 172.4 REMARK 620 6 HOH A 784 O 175.6 91.8 91.6 97.5 89.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 98 OD1 REMARK 620 2 ASP A 102 OD1 88.9 REMARK 620 3 ASP A 102 OD2 86.2 46.7 REMARK 620 4 476 A 405 O15 104.1 123.3 78.8 REMARK 620 5 HOH A 557 O 82.1 149.7 158.9 87.0 REMARK 620 6 HOH A 719 O 88.2 71.6 118.1 160.1 79.2 REMARK 620 7 HOH A 752 O 166.9 95.8 105.9 83.6 87.8 81.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 250 OD2 REMARK 620 2 476 A 405 O12 99.0 REMARK 620 3 476 A 405 O16 101.5 80.6 REMARK 620 4 HOH A 593 O 87.4 168.0 88.2 REMARK 620 5 HOH A 637 O 158.0 97.4 95.6 79.2 REMARK 620 6 HOH A 694 O 79.1 94.4 175.0 96.8 85.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 98 OD2 REMARK 620 2 ASP B 102 OD2 81.2 REMARK 620 3 476 B 405 O15 83.5 81.5 REMARK 620 4 476 B 405 O13 92.9 169.1 88.8 REMARK 620 5 HOH B 634 O 87.9 93.6 170.6 95.3 REMARK 620 6 HOH B 864 O 172.5 91.6 97.5 94.6 90.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 98 OD1 REMARK 620 2 ASP B 102 OD1 88.7 REMARK 620 3 ASP B 102 OD2 84.6 47.7 REMARK 620 4 476 B 405 O15 102.5 123.4 78.0 REMARK 620 5 HOH B 624 O 81.7 152.7 154.2 83.8 REMARK 620 6 HOH B 697 O 89.2 72.2 119.5 160.2 82.1 REMARK 620 7 HOH B 851 O 169.3 96.4 105.7 82.5 89.6 83.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 250 OD2 REMARK 620 2 476 B 405 O12 95.7 REMARK 620 3 476 B 405 O16 101.6 82.4 REMARK 620 4 HOH B 644 O 90.6 169.9 88.7 REMARK 620 5 HOH B 711 O 160.9 96.0 94.8 79.9 REMARK 620 6 HOH B 775 O 79.7 94.5 176.8 94.3 84.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPR A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 476 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPR B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 476 B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide FME B 1 and ALA B 2 DBREF 6VJC A 2 362 UNP Q4QBL1 Q4QBL1_LEIMA 2 362 DBREF 6VJC B 2 362 UNP Q4QBL1 Q4QBL1_LEIMA 2 362 SEQADV 6VJC FME A 1 UNP Q4QBL1 EXPRESSION TAG SEQADV 6VJC TYR A 164 UNP Q4QBL1 THR 164 ENGINEERED MUTATION SEQADV 6VJC FME B 1 UNP Q4QBL1 EXPRESSION TAG SEQADV 6VJC TYR B 164 UNP Q4QBL1 THR 164 ENGINEERED MUTATION SEQRES 1 A 362 FME ALA HIS MET GLU ARG PHE GLN LYS VAL TYR GLU GLU SEQRES 2 A 362 VAL GLN GLU PHE LEU LEU GLY ASP ALA GLU LYS ARG PHE SEQRES 3 A 362 GLU MET ASP VAL HIS ARG LYS GLY TYR LEU LYS SER MET SEQRES 4 A 362 MET ASP THR THR CYS LEU GLY GLY LYS TYR ASN ARG GLY SEQRES 5 A 362 LEU CYS VAL VAL ASP VAL ALA GLU ALA MET ALA LYS ASP SEQRES 6 A 362 THR GLN MET ASP ALA ALA ALA MET GLU ARG VAL LEU HIS SEQRES 7 A 362 ASP ALA CYS VAL CYS GLY TRP MET ILE GLU MET LEU GLN SEQRES 8 A 362 ALA HIS PHE LEU VAL GLU ASP ASP ILE MET ASP HIS SER SEQRES 9 A 362 LYS THR ARG ARG GLY LYS PRO CYS TRP TYR LEU HIS PRO SEQRES 10 A 362 GLY VAL THR ALA GLN VAL ALA ILE ASN ASP GLY LEU ILE SEQRES 11 A 362 LEU LEU ALA TRP ALA THR GLN MET ALA LEU HIS TYR PHE SEQRES 12 A 362 ALA ASP ARG PRO PHE LEU ALA GLU VAL LEU ARG VAL PHE SEQRES 13 A 362 HIS ASP VAL ASP LEU THR THR TYR ILE GLY GLN LEU TYR SEQRES 14 A 362 ASP VAL THR SER MET VAL ASP SER ALA LYS LEU ASP ALA SEQRES 15 A 362 LYS VAL ALA HIS ALA ASN THR THR ASP TYR VAL GLU TYR SEQRES 16 A 362 THR PRO PHE ASN HIS ARG ARG ILE VAL VAL TYR LYS THR SEQRES 17 A 362 ALA TYR TYR THR TYR TRP LEU PRO LEU VAL MET GLY LEU SEQRES 18 A 362 LEU VAL SER GLY THR LEU GLU LYS VAL ASP LYS LYS ALA SEQRES 19 A 362 THR HIS LYS VAL ALA MET VAL MET GLY GLU TYR PHE GLN SEQRES 20 A 362 VAL GLN ASP ASP VAL MET ASP CYS PHE THR PRO PRO GLU SEQRES 21 A 362 LYS LEU GLY LYS ILE GLY THR ASP ILE GLU ASP ALA LYS SEQRES 22 A 362 CYS SER TRP LEU ALA VAL THR PHE LEU THR THR ALA PRO SEQRES 23 A 362 ALA GLU LYS VAL ALA GLU PHE LYS ALA ASN TYR GLY SER SEQRES 24 A 362 THR ASP PRO ALA ALA VAL ALA VAL ILE LYS GLN LEU TYR SEQRES 25 A 362 THR GLU GLN ASN LEU LEU ALA ARG PHE GLU GLU TYR GLU SEQRES 26 A 362 LYS ALA VAL VAL ALA GLU VAL GLU GLN LEU ILE ALA ALA SEQRES 27 A 362 LEU GLU ALA GLN ASN ALA ALA PHE ALA ALA SER VAL LYS SEQRES 28 A 362 VAL LEU TRP SER LYS THR TYR LYS ARG GLN LYS SEQRES 1 B 362 FME ALA HIS MET GLU ARG PHE GLN LYS VAL TYR GLU GLU SEQRES 2 B 362 VAL GLN GLU PHE LEU LEU GLY ASP ALA GLU LYS ARG PHE SEQRES 3 B 362 GLU MET ASP VAL HIS ARG LYS GLY TYR LEU LYS SER MET SEQRES 4 B 362 MET ASP THR THR CYS LEU GLY GLY LYS TYR ASN ARG GLY SEQRES 5 B 362 LEU CYS VAL VAL ASP VAL ALA GLU ALA MET ALA LYS ASP SEQRES 6 B 362 THR GLN MET ASP ALA ALA ALA MET GLU ARG VAL LEU HIS SEQRES 7 B 362 ASP ALA CYS VAL CYS GLY TRP MET ILE GLU MET LEU GLN SEQRES 8 B 362 ALA HIS PHE LEU VAL GLU ASP ASP ILE MET ASP HIS SER SEQRES 9 B 362 LYS THR ARG ARG GLY LYS PRO CYS TRP TYR LEU HIS PRO SEQRES 10 B 362 GLY VAL THR ALA GLN VAL ALA ILE ASN ASP GLY LEU ILE SEQRES 11 B 362 LEU LEU ALA TRP ALA THR GLN MET ALA LEU HIS TYR PHE SEQRES 12 B 362 ALA ASP ARG PRO PHE LEU ALA GLU VAL LEU ARG VAL PHE SEQRES 13 B 362 HIS ASP VAL ASP LEU THR THR TYR ILE GLY GLN LEU TYR SEQRES 14 B 362 ASP VAL THR SER MET VAL ASP SER ALA LYS LEU ASP ALA SEQRES 15 B 362 LYS VAL ALA HIS ALA ASN THR THR ASP TYR VAL GLU TYR SEQRES 16 B 362 THR PRO PHE ASN HIS ARG ARG ILE VAL VAL TYR LYS THR SEQRES 17 B 362 ALA TYR TYR THR TYR TRP LEU PRO LEU VAL MET GLY LEU SEQRES 18 B 362 LEU VAL SER GLY THR LEU GLU LYS VAL ASP LYS LYS ALA SEQRES 19 B 362 THR HIS LYS VAL ALA MET VAL MET GLY GLU TYR PHE GLN SEQRES 20 B 362 VAL GLN ASP ASP VAL MET ASP CYS PHE THR PRO PRO GLU SEQRES 21 B 362 LYS LEU GLY LYS ILE GLY THR ASP ILE GLU ASP ALA LYS SEQRES 22 B 362 CYS SER TRP LEU ALA VAL THR PHE LEU THR THR ALA PRO SEQRES 23 B 362 ALA GLU LYS VAL ALA GLU PHE LYS ALA ASN TYR GLY SER SEQRES 24 B 362 THR ASP PRO ALA ALA VAL ALA VAL ILE LYS GLN LEU TYR SEQRES 25 B 362 THR GLU GLN ASN LEU LEU ALA ARG PHE GLU GLU TYR GLU SEQRES 26 B 362 LYS ALA VAL VAL ALA GLU VAL GLU GLN LEU ILE ALA ALA SEQRES 27 B 362 LEU GLU ALA GLN ASN ALA ALA PHE ALA ALA SER VAL LYS SEQRES 28 B 362 VAL LEU TRP SER LYS THR TYR LYS ARG GLN LYS HET FME A 1 17 HET FME B 1 10 HET CA A 401 1 HET CA A 402 1 HET CA A 403 1 HET IPR A 404 14 HET 476 A 405 20 HET ACT A 406 4 HET PEG A 407 7 HET CA B 401 1 HET CA B 402 1 HET CA B 403 1 HET IPR B 404 14 HET 476 B 405 20 HET ACT B 406 4 HETNAM FME N-FORMYLMETHIONINE HETNAM CA CALCIUM ION HETNAM IPR ISOPENTYL PYROPHOSPHATE HETNAM 476 3-BUTYL-1-(2,2-DIPHOSPHONOETHYL)PYRIDINIUM HETNAM ACT ACETATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 1 FME 2(C6 H11 N O3 S) FORMUL 3 CA 6(CA 2+) FORMUL 6 IPR 2(C5 H14 O7 P2) FORMUL 7 476 2(C11 H20 N O6 P2 1+) FORMUL 8 ACT 2(C2 H3 O2 1-) FORMUL 9 PEG C4 H10 O3 FORMUL 16 HOH *698(H2 O) HELIX 1 AA1 HIS A 3 GLU A 27 1 25 HELIX 2 AA2 ASP A 29 LEU A 45 1 17 HELIX 3 AA3 TYR A 49 THR A 66 1 18 HELIX 4 AA4 ASP A 69 HIS A 103 1 35 HELIX 5 AA5 TRP A 113 HIS A 116 5 4 HELIX 6 AA6 THR A 120 PHE A 143 1 24 HELIX 7 AA7 PHE A 148 THR A 172 1 25 HELIX 8 AA8 ASP A 176 LEU A 180 5 5 HELIX 9 AA9 THR A 196 THR A 208 1 13 HELIX 10 AB1 THR A 208 TYR A 213 1 6 HELIX 11 AB2 TYR A 213 SER A 224 1 12 HELIX 12 AB3 THR A 226 VAL A 230 5 5 HELIX 13 AB4 ASP A 231 THR A 257 1 27 HELIX 14 AB5 PRO A 258 GLY A 263 1 6 HELIX 15 AB6 SER A 275 ALA A 285 1 11 HELIX 16 AB7 PRO A 286 ALA A 295 1 10 HELIX 17 AB8 ASP A 301 GLN A 315 1 15 HELIX 18 AB9 ASN A 316 ASN A 343 1 28 HELIX 19 AC1 ASN A 343 TYR A 358 1 16 HELIX 20 AC2 HIS B 3 GLU B 27 1 25 HELIX 21 AC3 ASP B 29 LEU B 45 1 17 HELIX 22 AC4 TYR B 49 THR B 66 1 18 HELIX 23 AC5 ASP B 69 ASP B 102 1 34 HELIX 24 AC6 TRP B 113 HIS B 116 5 4 HELIX 25 AC7 THR B 120 PHE B 143 1 24 HELIX 26 AC8 PHE B 148 THR B 172 1 25 HELIX 27 AC9 ASP B 176 LEU B 180 5 5 HELIX 28 AD1 THR B 196 THR B 208 1 13 HELIX 29 AD2 THR B 208 TYR B 213 1 6 HELIX 30 AD3 TYR B 213 SER B 224 1 12 HELIX 31 AD4 THR B 226 VAL B 230 5 5 HELIX 32 AD5 ASP B 231 THR B 257 1 27 HELIX 33 AD6 PRO B 258 GLY B 263 1 6 HELIX 34 AD7 SER B 275 ALA B 285 1 11 HELIX 35 AD8 PRO B 286 TYR B 297 1 12 HELIX 36 AD9 ASP B 301 GLN B 315 1 15 HELIX 37 AE1 ASN B 316 ASN B 343 1 28 HELIX 38 AE2 ASN B 343 TYR B 358 1 16 SHEET 1 AA1 2 THR A 106 ARG A 107 0 SHEET 2 AA1 2 LYS A 110 PRO A 111 -1 O LYS A 110 N ARG A 107 SHEET 1 AA2 2 THR B 106 ARG B 107 0 SHEET 2 AA2 2 LYS B 110 PRO B 111 -1 O LYS B 110 N ARG B 107 LINK C FME A 1 N ALA A 2 1555 1555 1.34 LINK C FME B 1 N ALA B 2 1555 1555 1.34 LINK OD2 ASP A 98 CA CA A 402 1555 1555 2.32 LINK OD1 ASP A 98 CA CA A 403 1555 1555 2.40 LINK OD2 ASP A 102 CA CA A 402 1555 1555 2.24 LINK OD1 ASP A 102 CA CA A 403 1555 1555 2.96 LINK OD2 ASP A 102 CA CA A 403 1555 1555 2.42 LINK OD2 ASP A 250 CA CA A 401 1555 1555 2.33 LINK CA CA A 401 O12 476 A 405 1555 1555 2.36 LINK CA CA A 401 O16 476 A 405 1555 1555 2.30 LINK CA CA A 401 O HOH A 593 1555 1555 2.34 LINK CA CA A 401 O HOH A 637 1555 1555 2.40 LINK CA CA A 401 O HOH A 694 1555 1555 2.53 LINK CA CA A 402 O13 476 A 405 1555 1555 2.25 LINK CA CA A 402 O15 476 A 405 1555 1555 2.39 LINK CA CA A 402 O HOH A 526 1555 1555 2.30 LINK CA CA A 402 O HOH A 784 1555 1555 2.30 LINK CA CA A 403 O15 476 A 405 1555 1555 2.42 LINK CA CA A 403 O HOH A 557 1555 1555 2.40 LINK CA CA A 403 O HOH A 719 1555 1555 2.38 LINK CA CA A 403 O HOH A 752 1555 1555 2.45 LINK OD2 ASP B 98 CA CA B 402 1555 1555 2.30 LINK OD1 ASP B 98 CA CA B 403 1555 1555 2.37 LINK OD2 ASP B 102 CA CA B 402 1555 1555 2.25 LINK OD1 ASP B 102 CA CA B 403 1555 1555 2.93 LINK OD2 ASP B 102 CA CA B 403 1555 1555 2.36 LINK OD2 ASP B 250 CA CA B 401 1555 1555 2.27 LINK CA CA B 401 O12 476 B 405 1555 1555 2.29 LINK CA CA B 401 O16 476 B 405 1555 1555 2.28 LINK CA CA B 401 O HOH B 644 1555 1555 2.44 LINK CA CA B 401 O HOH B 711 1555 1555 2.47 LINK CA CA B 401 O HOH B 775 1555 1555 2.42 LINK CA CA B 402 O15 476 B 405 1555 1555 2.35 LINK CA CA B 402 O13 476 B 405 1555 1555 2.20 LINK CA CA B 402 O HOH B 634 1555 1555 2.33 LINK CA CA B 402 O HOH B 864 1555 1555 2.26 LINK CA CA B 403 O15 476 B 405 1555 1555 2.42 LINK CA CA B 403 O HOH B 624 1555 1555 2.40 LINK CA CA B 403 O HOH B 697 1555 1555 2.32 LINK CA CA B 403 O HOH B 851 1555 1555 2.41 SITE 1 AC1 5 ASP A 250 476 A 405 HOH A 593 HOH A 637 SITE 2 AC1 5 HOH A 694 SITE 1 AC2 6 ASP A 98 ASP A 102 CA A 403 476 A 405 SITE 2 AC2 6 HOH A 526 HOH A 784 SITE 1 AC3 7 ASP A 98 ASP A 102 CA A 402 476 A 405 SITE 2 AC3 7 HOH A 557 HOH A 719 HOH A 752 SITE 1 AC4 18 GLY A 47 LYS A 48 ARG A 51 GLN A 91 SITE 2 AC4 18 ARG A 108 THR A 208 TYR A 211 PHE A 246 SITE 3 AC4 18 GLN A 247 ASP A 250 476 A 405 HOH A 574 SITE 4 AC4 18 HOH A 585 HOH A 623 HOH A 640 HOH A 670 SITE 5 AC4 18 HOH A 695 HOH A 707 SITE 1 AC5 17 PHE A 94 ASP A 98 MET A 101 ASP A 102 SITE 2 AC5 17 ARG A 107 GLN A 167 LYS A 207 THR A 208 SITE 3 AC5 17 ASP A 250 LYS A 264 CA A 401 CA A 402 SITE 4 AC5 17 CA A 403 IPR A 404 HOH A 557 HOH A 641 SITE 5 AC5 17 HOH A 674 SITE 1 AC6 9 ASP A 254 GLY A 266 THR A 267 ASP A 268 SITE 2 AC6 9 ILE A 269 GLU A 270 VAL A 305 LYS A 309 SITE 3 AC6 9 HOH A 646 SITE 1 AC7 8 GLU A 23 LYS A 33 SER A 355 TYR A 358 SITE 2 AC7 8 HOH A 501 HOH A 514 HOH A 583 HOH A 772 SITE 1 AC8 5 ASP B 250 476 B 405 HOH B 644 HOH B 711 SITE 2 AC8 5 HOH B 775 SITE 1 AC9 6 ASP B 98 ASP B 102 CA B 403 476 B 405 SITE 2 AC9 6 HOH B 634 HOH B 864 SITE 1 AD1 7 ASP B 98 ASP B 102 CA B 402 476 B 405 SITE 2 AD1 7 HOH B 624 HOH B 697 HOH B 851 SITE 1 AD2 18 GLY B 47 LYS B 48 ARG B 51 GLN B 91 SITE 2 AD2 18 ARG B 108 THR B 208 TYR B 211 PHE B 246 SITE 3 AD2 18 GLN B 247 ASP B 250 476 B 405 HOH B 628 SITE 4 AD2 18 HOH B 670 HOH B 703 HOH B 734 HOH B 745 SITE 5 AD2 18 HOH B 769 HOH B 796 SITE 1 AD3 16 ASP B 98 MET B 101 ASP B 102 ARG B 107 SITE 2 AD3 16 GLN B 167 LYS B 207 THR B 208 ASP B 250 SITE 3 AD3 16 LYS B 264 CA B 401 CA B 402 CA B 403 SITE 4 AD3 16 IPR B 404 HOH B 624 HOH B 713 HOH B 760 SITE 1 AD4 9 ASP B 254 GLY B 266 THR B 267 ASP B 268 SITE 2 AD4 9 ILE B 269 GLU B 270 VAL B 305 LYS B 309 SITE 3 AD4 9 HOH B 749 SITE 1 AD5 8 PHE A 198 HIS B 3 MET B 4 GLU B 27 SITE 2 AD5 8 HOH B 807 HOH B 823 HOH B 861 HOH B 918 CRYST1 80.525 85.889 107.202 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012419 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011643 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009328 0.00000 HETATM 1 N FME A 1 34.789 48.722 25.361 1.00 55.75 N HETATM 2 CN AFME A 1 33.510 48.349 25.066 0.50 53.60 C HETATM 3 CN BFME A 1 34.109 49.799 24.869 0.50 51.73 C HETATM 4 O1 AFME A 1 32.838 47.558 25.741 0.50 54.72 O HETATM 5 O1 BFME A 1 32.995 50.219 25.202 0.50 44.92 O HETATM 6 CA AFME A 1 35.778 48.842 24.305 0.50 52.29 C HETATM 7 CA BFME A 1 35.901 48.603 24.424 0.50 50.10 C HETATM 8 CB AFME A 1 37.218 48.757 24.834 0.50 52.30 C HETATM 9 CB BFME A 1 37.161 48.040 25.107 0.50 49.13 C HETATM 10 CG AFME A 1 37.690 50.088 25.394 0.50 50.68 C HETATM 11 CG BFME A 1 37.839 49.080 25.997 0.50 47.50 C HETATM 12 SD AFME A 1 38.209 51.249 24.113 0.50 50.47 S HETATM 13 SD BFME A 1 38.422 48.387 27.560 0.50 40.80 S HETATM 14 CE AFME A 1 38.877 52.568 25.126 0.50 50.86 C HETATM 15 CE BFME A 1 39.207 49.801 28.332 0.50 43.55 C HETATM 16 C FME A 1 35.483 47.846 23.156 1.00 46.39 C HETATM 17 O FME A 1 34.856 46.760 23.349 1.00 43.16 O