HEADER TRANSFERASE 24-JAN-20 6VLH TITLE HIV INTEGRASE CORE DOMAIN (IN) IN COMPLEX WITH DIMER-SPANNING LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CORE DOMAIN (UNP RESIDUES 50-211); COMPND 5 EC: 2.7.7.49; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_COMMON: HIV-1; SOURCE 4 ORGANISM_TAXID: 11676; SOURCE 5 GENE: POL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIRUS, INHIBITOR, COMPLEX, HIV INTEGRASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.GORMAN,M.W.PARKER REVDAT 1 27-JAN-21 6VLH 0 JRNL AUTH M.SCANLON,M.A.GORMAN JRNL TITL HIV INTEGRASE CORE DOMAIN (IN) IN COMPLEX WITH DIMERIC JRNL TITL 2 SPANNING INHIBITOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998-000) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 8.540 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 18621 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.960 REMARK 3 FREE R VALUE TEST SET COUNT : 3644 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.5554 - 5.5286 0.88 1624 171 0.1977 0.2820 REMARK 3 2 5.5286 - 4.3902 0.90 1648 191 0.1288 0.2287 REMARK 3 3 4.3902 - 3.8359 0.90 1635 177 0.1298 0.1982 REMARK 3 4 3.8359 - 3.4854 0.89 1662 191 0.1470 0.2764 REMARK 3 5 3.4854 - 3.2357 0.90 1661 181 0.1830 0.2172 REMARK 3 6 3.2357 - 3.0450 0.90 1649 188 0.1987 0.3585 REMARK 3 7 3.0450 - 2.8926 0.90 1639 182 0.2021 0.2251 REMARK 3 8 2.8926 - 2.7667 0.90 1702 186 0.2257 0.3080 REMARK 3 9 2.7667 - 2.6602 0.90 1655 179 0.2601 0.2952 REMARK 3 10 2.6602 - 2.5684 0.90 1639 186 0.2700 0.3250 REMARK 3 11 2.5684 - 2.4881 0.90 1693 186 0.2696 0.3553 REMARK 3 12 2.4881 - 2.4170 0.91 1639 170 0.2723 0.3082 REMARK 3 13 2.4170 - 2.3534 0.90 1666 194 0.2862 0.3297 REMARK 3 14 2.3534 - 2.2960 0.90 1654 186 0.2985 0.4743 REMARK 3 15 2.2960 - 2.2438 0.86 1628 171 0.4799 0.6172 REMARK 3 16 2.2438 - 2.1961 0.87 1519 172 0.4580 0.6430 REMARK 3 17 2.1961 - 2.1521 0.90 1709 196 0.3232 0.3651 REMARK 3 18 2.1521 - 2.1115 0.90 1604 176 0.3087 0.4009 REMARK 3 19 2.1115 - 2.0738 0.91 1735 180 0.3141 0.3838 REMARK 3 20 2.0738 - 2.0387 0.86 1561 167 0.3128 0.3073 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2239 REMARK 3 ANGLE : 1.533 3030 REMARK 3 CHIRALITY : 0.055 334 REMARK 3 PLANARITY : 0.008 367 REMARK 3 DIHEDRAL : 18.911 1278 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VLH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246621. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : PHENIX REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18621 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.036 REMARK 200 RESOLUTION RANGE LOW (A) : 46.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.43800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M AMMONIUM SULFATE, 100 MM REMARK 280 POTASSIUM IODIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.57400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 104.36100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.78700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -128.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 48 REMARK 465 SER A 49 REMARK 465 MET A 50 REMARK 465 HIS A 51 REMARK 465 GLY A 52 REMARK 465 GLU A 53 REMARK 465 VAL A 54 REMARK 465 ASP A 55 REMARK 465 GLU A 92 REMARK 465 THR A 93 REMARK 465 TYR A 143 REMARK 465 ASN A 144 REMARK 465 PRO A 145 REMARK 465 GLN A 146 REMARK 465 SER A 147 REMARK 465 GLN A 148 REMARK 465 GLY A 149 REMARK 465 VAL A 150 REMARK 465 ILE A 151 REMARK 465 GLU A 152 REMARK 465 LYS A 188 REMARK 465 GLY A 189 REMARK 465 GLY A 190 REMARK 465 ILE A 208 REMARK 465 GLU A 209 REMARK 465 THR A 210 REMARK 465 LYS A 211 REMARK 465 GLY B 48 REMARK 465 SER B 49 REMARK 465 MET B 50 REMARK 465 HIS B 51 REMARK 465 GLY B 52 REMARK 465 GLU B 53 REMARK 465 VAL B 54 REMARK 465 ASP B 55 REMARK 465 PRO B 90 REMARK 465 ALA B 91 REMARK 465 GLU B 92 REMARK 465 ILE B 141 REMARK 465 PRO B 142 REMARK 465 TYR B 143 REMARK 465 ASN B 144 REMARK 465 PRO B 145 REMARK 465 GLN B 146 REMARK 465 SER B 147 REMARK 465 GLN B 148 REMARK 465 GLY B 149 REMARK 465 VAL B 150 REMARK 465 ILE B 151 REMARK 465 GLU B 152 REMARK 465 SER B 153 REMARK 465 MET B 154 REMARK 465 GLU B 209 REMARK 465 THR B 210 REMARK 465 LYS B 211 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 99 OE2 GLU B 87 1.33 REMARK 500 HD1 HIS A 114 O GLY A 140 1.42 REMARK 500 O LYS A 111 H LYS A 136 1.45 REMARK 500 HD22 ASN A 120 OE1 GLN A 137 1.49 REMARK 500 HD1 HIS B 67 O1 SO4 B 303 1.50 REMARK 500 OG1 THR B 93 H GLY B 94 1.52 REMARK 500 HG SER B 123 O1 SO4 B 306 1.54 REMARK 500 OE2 GLU A 157 HD1 HIS A 183 1.55 REMARK 500 O HOH B 417 O HOH B 419 1.88 REMARK 500 OH TYR A 99 OE2 GLU B 87 1.91 REMARK 500 O LYS A 103 O HOH A 401 2.01 REMARK 500 O HOH A 416 O HOH B 417 2.03 REMARK 500 O ARG B 107 O HOH B 401 2.09 REMARK 500 OE1 GLU A 85 NH1 ARG A 107 2.12 REMARK 500 OG SER B 57 O1 SO4 B 305 2.16 REMARK 500 ND1 HIS A 114 O GLY A 140 2.17 REMARK 500 O THR B 124 O HOH B 402 2.18 REMARK 500 NH2 ARG A 199 O HOH A 402 2.19 REMARK 500 O PRO A 58 O HOH A 403 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 425 O HOH B 426 4555 1.91 REMARK 500 OG1 THR B 122 O3 SO4 A 308 3554 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 57 -118.95 -150.07 REMARK 500 PRO A 58 -93.75 -31.40 REMARK 500 GLU A 170 -84.06 -80.53 REMARK 500 THR A 206 -59.67 -27.66 REMARK 500 SER B 57 153.81 154.25 REMARK 500 LEU B 68 136.16 -171.19 REMARK 500 PHE B 100 -65.94 -28.41 REMARK 500 ASN B 117 -169.47 -104.82 REMARK 500 ILE B 191 -58.17 -135.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue R2A B 308 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6VKA RELATED DB: PDB DBREF 6VLH A 50 211 UNP F2WR39 F2WR39_9HIV1 50 211 DBREF 6VLH B 50 211 UNP F2WR39 F2WR39_9HIV1 50 211 SEQADV 6VLH GLY A 48 UNP F2WR39 EXPRESSION TAG SEQADV 6VLH SER A 49 UNP F2WR39 EXPRESSION TAG SEQADV 6VLH GLU A 53 UNP F2WR39 GLN 53 ENGINEERED MUTATION SEQADV 6VLH SER A 56 UNP F2WR39 CYS 56 ENGINEERED MUTATION SEQADV 6VLH GLU A 131 UNP F2WR39 TRP 131 ENGINEERED MUTATION SEQADV 6VLH LYS A 185 UNP F2WR39 PHE 185 ENGINEERED MUTATION SEQADV 6VLH GLU A 209 UNP F2WR39 GLN 209 ENGINEERED MUTATION SEQADV 6VLH GLY B 48 UNP F2WR39 EXPRESSION TAG SEQADV 6VLH SER B 49 UNP F2WR39 EXPRESSION TAG SEQADV 6VLH GLU B 53 UNP F2WR39 GLN 53 ENGINEERED MUTATION SEQADV 6VLH SER B 56 UNP F2WR39 CYS 56 ENGINEERED MUTATION SEQADV 6VLH GLU B 131 UNP F2WR39 TRP 131 ENGINEERED MUTATION SEQADV 6VLH LYS B 185 UNP F2WR39 PHE 185 ENGINEERED MUTATION SEQADV 6VLH GLU B 209 UNP F2WR39 GLN 209 ENGINEERED MUTATION SEQRES 1 A 164 GLY SER MET HIS GLY GLU VAL ASP SER SER PRO GLY ILE SEQRES 2 A 164 TRP GLN LEU ASP CSO THR HIS LEU GLU GLY LYS VAL ILE SEQRES 3 A 164 LEU VAL ALA VAL HIS VAL ALA SER GLY TYR ILE GLU ALA SEQRES 4 A 164 GLU VAL ILE PRO ALA GLU THR GLY GLN GLU THR ALA TYR SEQRES 5 A 164 PHE LEU LEU LYS LEU ALA GLY ARG TRP PRO VAL LYS THR SEQRES 6 A 164 VAL HIS THR ASP ASN GLY SER ASN PHE THR SER THR THR SEQRES 7 A 164 VAL LYS ALA ALA CYS GLU TRP ALA GLY ILE LYS GLN GLU SEQRES 8 A 164 PHE GLY ILE PRO TYR ASN PRO GLN SER GLN GLY VAL ILE SEQRES 9 A 164 GLU SER MET ASN LYS GLU LEU LYS LYS ILE ILE GLY GLN SEQRES 10 A 164 VAL ARG ASP GLN ALA GLU HIS LEU LYS THR ALA VAL GLN SEQRES 11 A 164 MET ALA VAL PHE ILE HIS ASN LYS LYS ARG LYS GLY GLY SEQRES 12 A 164 ILE GLY GLY TYR SER ALA GLY GLU ARG ILE VAL ASP ILE SEQRES 13 A 164 ILE ALA THR ASP ILE GLU THR LYS SEQRES 1 B 164 GLY SER MET HIS GLY GLU VAL ASP SER SER PRO GLY ILE SEQRES 2 B 164 TRP GLN LEU ASP CSO THR HIS LEU GLU GLY LYS VAL ILE SEQRES 3 B 164 LEU VAL ALA VAL HIS VAL ALA SER GLY TYR ILE GLU ALA SEQRES 4 B 164 GLU VAL ILE PRO ALA GLU THR GLY GLN GLU THR ALA TYR SEQRES 5 B 164 PHE LEU LEU LYS LEU ALA GLY ARG TRP PRO VAL LYS THR SEQRES 6 B 164 VAL HIS THR ASP ASN GLY SER ASN PHE THR SER THR THR SEQRES 7 B 164 VAL LYS ALA ALA CYS GLU TRP ALA GLY ILE LYS GLN GLU SEQRES 8 B 164 PHE GLY ILE PRO TYR ASN PRO GLN SER GLN GLY VAL ILE SEQRES 9 B 164 GLU SER MET ASN LYS GLU LEU LYS LYS ILE ILE GLY GLN SEQRES 10 B 164 VAL ARG ASP GLN ALA GLU HIS LEU LYS THR ALA VAL GLN SEQRES 11 B 164 MET ALA VAL PHE ILE HIS ASN LYS LYS ARG LYS GLY GLY SEQRES 12 B 164 ILE GLY GLY TYR SER ALA GLY GLU ARG ILE VAL ASP ILE SEQRES 13 B 164 ILE ALA THR ASP ILE GLU THR LYS MODRES 6VLH CSO A 65 CYS MODIFIED RESIDUE MODRES 6VLH CSO B 65 CYS MODIFIED RESIDUE HET CSO A 65 11 HET CSO B 65 11 HET IOD A 301 1 HET IOD A 302 1 HET IOD A 303 1 HET IOD A 304 1 HET SO4 A 305 5 HET SO4 A 306 5 HET SO4 A 307 5 HET SO4 A 308 5 HET IOD B 301 1 HET IOD B 302 1 HET SO4 B 303 5 HET SO4 B 304 5 HET SO4 B 305 5 HET SO4 B 306 5 HET SO4 B 307 5 HET R2A B 308 94 HETNAM CSO S-HYDROXYCYSTEINE HETNAM IOD IODIDE ION HETNAM SO4 SULFATE ION HETNAM R2A (2-{[3-(4-{2-[(3-{[3-(CARBOXYMETHYL)-5-METHYL-1- HETNAM 2 R2A BENZOFURAN-2-YL]ETHYNYL}BENZENE-1-CARBONYL) HETNAM 3 R2A AMINO]ETHYL}PIPERAZINE-1-CARBONYL)PHENYL]ETHYNYL}-5- HETNAM 4 R2A METHYL-1-BENZOFURAN-3-YL)ACETIC ACID FORMUL 1 CSO 2(C3 H7 N O3 S) FORMUL 3 IOD 6(I 1-) FORMUL 7 SO4 9(O4 S 2-) FORMUL 18 R2A C46 H39 N3 O8 FORMUL 19 HOH *54(H2 O) HELIX 1 AA1 GLN A 95 TRP A 108 1 14 HELIX 2 AA2 GLY A 118 THR A 122 5 5 HELIX 3 AA3 SER A 123 GLY A 134 1 12 HELIX 4 AA4 MET A 154 ARG A 166 1 13 HELIX 5 AA5 ASP A 167 ALA A 169 5 3 HELIX 6 AA6 HIS A 171 LYS A 186 1 16 HELIX 7 AA7 SER A 195 ASP A 207 1 13 HELIX 8 AA8 GLY B 94 TRP B 108 1 15 HELIX 9 AA9 GLY B 118 THR B 122 5 5 HELIX 10 AB1 SER B 123 GLY B 134 1 12 HELIX 11 AB2 LYS B 156 ASP B 167 1 12 HELIX 12 AB3 HIS B 171 LYS B 186 1 16 HELIX 13 AB4 SER B 195 ILE B 208 1 14 SHEET 1 AA1 5 ILE A 84 ILE A 89 0 SHEET 2 AA1 5 VAL A 72 HIS A 78 -1 N LEU A 74 O GLU A 87 SHEET 3 AA1 5 ILE A 60 HIS A 67 -1 N GLN A 62 O VAL A 77 SHEET 4 AA1 5 THR A 112 THR A 115 1 O HIS A 114 N LEU A 63 SHEET 5 AA1 5 LYS A 136 PHE A 139 1 O LYS A 136 N VAL A 113 SHEET 1 AA2 5 ILE B 84 ILE B 89 0 SHEET 2 AA2 5 LYS B 71 HIS B 78 -1 N LEU B 74 O GLU B 87 SHEET 3 AA2 5 ILE B 60 LEU B 68 -1 N THR B 66 O ILE B 73 SHEET 4 AA2 5 THR B 112 THR B 115 1 O HIS B 114 N LEU B 63 SHEET 5 AA2 5 LYS B 136 PHE B 139 1 O LYS B 136 N VAL B 113 LINK C ASP A 64 N CSO A 65 1555 1555 1.33 LINK C CSO A 65 N THR A 66 1555 1555 1.32 LINK C ASP B 64 N CSO B 65 1555 1555 1.33 LINK C CSO B 65 N THR B 66 1555 1555 1.32 SITE 1 AC1 2 LYS A 71 LYS A 173 SITE 1 AC2 2 HIS A 67 GLY A 70 SITE 1 AC3 2 PHE A 121 ARG A 187 SITE 1 AC4 3 THR A 66 HIS A 67 LYS A 159 SITE 1 AC5 3 ASP A 116 ASN A 117 GLU B 131 SITE 1 AC6 4 SER A 123 THR A 124 THR A 125 LYS B 111 SITE 1 AC7 6 PRO A 109 HOH A 405 HOH A 406 THR B 122 SITE 2 AC7 6 LYS B 127 LYS B 185 SITE 1 AC8 1 LYS B 173 SITE 1 AC9 3 ARG A 199 HOH A 421 GLY B 70 SITE 1 AD1 4 TYR A 194 THR B 66 HIS B 67 LYS B 159 SITE 1 AD2 4 LYS B 159 ILE B 162 GLY B 163 ARG B 166 SITE 1 AD3 6 SER B 57 PRO B 58 GLY B 59 ILE B 60 SITE 2 AD3 6 LYS B 111 HOH B 423 SITE 1 AD4 4 SER B 123 THR B 124 THR B 125 HOH B 409 SITE 1 AD5 3 ILE B 60 GLN B 62 HIS B 114 SITE 1 AD6 23 GLU A 87 GLN A 95 GLU A 96 ALA A 98 SITE 2 AD6 23 THR A 125 ALA A 128 ALA A 129 ALA A 169 SITE 3 AD6 23 GLU A 170 HIS A 171 LYS A 173 THR A 174 SITE 4 AD6 23 MET A 178 GLN B 95 GLU B 96 TYR B 99 SITE 5 AD6 23 LEU B 102 THR B 125 ALA B 129 ALA B 169 SITE 6 AD6 23 GLU B 170 HIS B 171 THR B 174 CRYST1 46.306 46.306 139.148 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021595 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021595 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007187 0.00000