data_6VLJ # _entry.id 6VLJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6VLJ pdb_00006vlj 10.2210/pdb6vlj/pdb WWPDB D_1000246623 ? ? BMRB 30718 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution NMR of Prochlorosin 2.8 produced by Prochlorococcus MIT 9313' _pdbx_database_related.db_id 30718 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6VLJ _pdbx_database_status.recvd_initial_deposition_date 2020-01-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bobeica, S.C.' 1 0000-0001-5058-5543 'Acedo, J.Z.' 2 0000-0002-6648-770X 'van der Donk, W.A.' 3 0000-0002-5467-7071 'Zhu, L.' 4 0000-0002-6657-271X # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? UK ? ? primary 'Chem Sci' ? ? 2041-6520 ? ? 11 ? 12854 12870 'Structural determinants of macrocyclization in substrate-controlled lanthipeptide biosynthetic pathways.' 2020 ? 10.1039/d0sc01651a 34094481 ? ? ? ? ? ? ? ? UK ? ? 1 'Chem Sci' ? ? 2041-6520 ? ? 11 ? 12871 12876 'Correction: Structural determinants of macrocyclization in substrate-controlled lanthipeptide biosynthetic pathways.' 2020 ? 10.1039/d0sc90208j 34101773 ? ? ? ? ? ? ? ? US ? ? 2 Biochemistry BICHAW 0033 0006-2960 ? ? 51 ? 4271 4279 'Structural characterization of four prochlorosins: a novel class of lantipeptides produced by planktonic marine cyanobacteria.' 2012 ? 10.1021/bi300255s 22574919 ? ? ? ? ? ? ? ? US ? ? 3 Nat.Chem.Biol. ? ? 1552-4469 ? ? 9 ? 157 159 'The sequence of the enterococcal cytolysin imparts unusual lanthionine stereochemistry.' 2013 ? 10.1038/nchembio.1162 23314913 ? ? ? ? ? ? ? ? US ? ? 4 Proc.Natl.Acad.Sci.USA PNASA6 0040 1091-6490 ? ? 107 ? 10430 10435 'Catalytic promiscuity in the biosynthesis of cyclic peptide secondary metabolites in planktonic marine cyanobacteria.' 2010 ? 10.1073/pnas.0913677107 20479271 ? ? ? ? ? ? ? ? US ? ? 5 Proc.Natl.Acad.Sci.USA PNASA6 0040 1091-6490 ? ? 114 ? E5424 E5433 'Evolutionary radiation of lanthipeptides in marine cyanobacteria.' 2017 ? 10.1073/pnas.1700990114 28630351 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bobeica, S.C.' 1 0000-0001-5058-5543 primary 'Zhu, L.' 2 0000-0002-6657-271X primary 'Acedo, J.Z.' 3 0000-0002-6648-770X primary 'Tang, W.' 4 0000-0002-5739-5416 primary 'van der Donk, W.A.' 5 0000-0002-5467-7071 1 'Bobeica, S.C.' 6 0000-0001-5058-5543 1 'Zhu, L.' 7 0000-0002-6657-271X 1 'Acedo, J.Z.' 8 0000-0002-6648-770X 1 'Tang, W.' 9 0000-0002-5739-5416 1 'van der Donk, W.A.' 10 0000-0002-5467-7071 2 'Tang, W.' 11 ? 2 'van der Donk, W.A.' 12 ? 3 'Tang, W.' 13 ? 3 'van der Donk, W.A.' 14 ? 4 'Li, B.' 15 ? 4 'Sher, D.' 16 ? 4 'Kelly, L.' 17 ? 4 'Shi, Y.' 18 ? 4 'Huang, K.' 19 ? 4 'Knerr, P.J.' 20 ? 4 'Joewono, I.' 21 ? 4 'Rusch, D.' 22 ? 4 'Chisholm, S.W.' 23 ? 4 'van der Donk, W.A.' 24 ? 5 'Cubillos-Ruiz, A.' 25 ? 5 'Berta-Thompson, J.W.' 26 ? 5 'Becker, J.W.' 27 ? 5 'van der Donk, W.A.' 28 ? 5 'Chisholm, S.W.' 29 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Prochlorosin 2.8' _entity.formula_weight 2057.289 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'AACHNHAP(DAL)MPP(DAL)YWEGEC' _entity_poly.pdbx_seq_one_letter_code_can AACHNHAPAMPPAYWEGEC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ALA n 1 3 CYS n 1 4 HIS n 1 5 ASN n 1 6 HIS n 1 7 ALA n 1 8 PRO n 1 9 DAL n 1 10 MET n 1 11 PRO n 1 12 PRO n 1 13 DAL n 1 14 TYR n 1 15 TRP n 1 16 GLU n 1 17 GLY n 1 18 GLU n 1 19 CYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 19 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Prochlorococcus marinus str. MIT 9313' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 74547 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details 'N-terminally His-tagged peptide obtained by co-expression with untagged ProcM' _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pRSFDuet-1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6VLJ _struct_ref.pdbx_db_accession 6VLJ _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6VLJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 19 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6VLJ _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 19 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 19 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DAL 'D-peptide linking' . D-ALANINE ? 'C3 H7 N O2' 89.093 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H TOCSY' 1 isotropic 2 1 1 '2D 1H-1H NOESY' 1 isotropic 3 2 2 '2D 1H-1H TOCSY' 1 isotropic 4 2 2 '2D 1H-1H NOESY' 1 isotropic 5 2 2 '2D 1H-13C HSQC' 1 isotropic 6 2 2 '2D 1H-15N HSQC' 1 isotropic 7 3 3 '2D 1H-1H TOCSY' 1 isotropic 8 3 3 '2D 1H-1H NOESY' 1 isotropic # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298 atm 1 6.0 0 ? 0 'Not defined' Pcn28_details 0.1 pH 0 0.1 K 2 298 atm 1 6.0 0 ? 0 'Not defined' Pcn28_D2O_details 0.1 pH 0 0.1 K 3 310 atm 1 6.0 0 ? 0 'Not defined' Pcn28_D2O_37C_details 0.1 pH 0 0.1 K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '33 mM Prochlorosin 2.8, 90% H2O/10% D2O' '90% H2O/10% D2O' Pcn2.8 solution ? 2 '33 mM Prochlorosin 2.8, 100% D2O' '100% D2O' Pcn2.8_D2O solution ? 3 '33 mM Prochlorosin 2.8, 100% D2O' '100% D2O' Pcn28_D2O_37C solution ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model VNMRS _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Agilent _pdbx_nmr_spectrometer.field_strength 750 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 6VLJ _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 5 # _pdbx_nmr_ensemble.entry_id 6VLJ _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with acceptable covalent geometry' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6VLJ _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria medoid # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 processing NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 2 'chemical shift assignment' Sparky ? Goddard 3 'peak picking' Sparky ? Goddard 4 'structure calculation' 'X-PLOR NIH' 2.51 'Schwieters, Kuszewski, Tjandra and Clore' 5 refinement 'X-PLOR NIH' 2.51 'Schwieters, Kuszewski, Tjandra and Clore' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6VLJ _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6VLJ _struct.title 'Solution NMR of Prochlorosin 2.8 produced by Prochlorococcus MIT 9313' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6VLJ _struct_keywords.text 'lanthipeptide, cyclic peptide, RiPP, posttranslational modification, UNKNOWN FUNCTION' _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A CYS 3 SG ? ? ? 1_555 A DAL 9 CB ? ? A CYS 3 A DAL 9 1_555 ? ? ? ? ? ? ? 1.809 ? ? covale2 covale both ? A PRO 8 C ? ? ? 1_555 A DAL 9 N ? ? A PRO 8 A DAL 9 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale3 covale both ? A DAL 9 C ? ? ? 1_555 A MET 10 N ? ? A DAL 9 A MET 10 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale4 covale both ? A PRO 12 C ? ? ? 1_555 A DAL 13 N ? ? A PRO 12 A DAL 13 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale5 covale both ? A DAL 13 C ? ? ? 1_555 A TYR 14 N ? ? A DAL 13 A TYR 14 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale6 covale none ? A DAL 13 CB ? ? ? 1_555 A CYS 19 SG ? ? A DAL 13 A CYS 19 1_555 ? ? ? ? ? ? ? 1.810 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ALA 7 A . ? ALA 7 A PRO 8 A ? PRO 8 A 1 -0.31 2 ALA 7 A . ? ALA 7 A PRO 8 A ? PRO 8 A 2 -0.17 3 ALA 7 A . ? ALA 7 A PRO 8 A ? PRO 8 A 3 -0.52 4 ALA 7 A . ? ALA 7 A PRO 8 A ? PRO 8 A 4 -0.49 5 ALA 7 A . ? ALA 7 A PRO 8 A ? PRO 8 A 5 -0.35 6 ALA 7 A . ? ALA 7 A PRO 8 A ? PRO 8 A 6 -0.05 7 ALA 7 A . ? ALA 7 A PRO 8 A ? PRO 8 A 7 -0.11 8 ALA 7 A . ? ALA 7 A PRO 8 A ? PRO 8 A 8 -0.41 9 ALA 7 A . ? ALA 7 A PRO 8 A ? PRO 8 A 9 -0.14 10 ALA 7 A . ? ALA 7 A PRO 8 A ? PRO 8 A 10 -0.67 11 ALA 7 A . ? ALA 7 A PRO 8 A ? PRO 8 A 11 0.15 12 ALA 7 A . ? ALA 7 A PRO 8 A ? PRO 8 A 12 -0.99 13 ALA 7 A . ? ALA 7 A PRO 8 A ? PRO 8 A 13 -0.35 14 ALA 7 A . ? ALA 7 A PRO 8 A ? PRO 8 A 14 0.11 15 ALA 7 A . ? ALA 7 A PRO 8 A ? PRO 8 A 15 -0.14 16 ALA 7 A . ? ALA 7 A PRO 8 A ? PRO 8 A 16 0.08 17 ALA 7 A . ? ALA 7 A PRO 8 A ? PRO 8 A 17 -0.22 18 ALA 7 A . ? ALA 7 A PRO 8 A ? PRO 8 A 18 0.29 19 ALA 7 A . ? ALA 7 A PRO 8 A ? PRO 8 A 19 -0.37 20 ALA 7 A . ? ALA 7 A PRO 8 A ? PRO 8 A 20 -0.84 # _atom_sites.entry_id 6VLJ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 CYS 3 3 3 CYS CYS A . n A 1 4 HIS 4 4 4 HIS HIS A . n A 1 5 ASN 5 5 5 ASN ASN A . n A 1 6 HIS 6 6 6 HIS HIS A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 DAL 9 9 9 DAL DAL A . n A 1 10 MET 10 10 10 MET MET A . n A 1 11 PRO 11 11 11 PRO PRO A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 DAL 13 13 13 DAL DAL A . n A 1 14 TYR 14 14 14 TYR TYR A . n A 1 15 TRP 15 15 15 TRP TRP A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 CYS 19 19 19 CYS CYS A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-07-08 2 'Structure model' 1 1 2021-07-14 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Database references' 4 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' struct_conn 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_struct_conn.pdbx_dist_value' 2 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 3 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 4 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 5 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 6 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 7 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 8 2 'Structure model' '_struct_conn.ptnr2_label_seq_id' 9 3 'Structure model' '_database_2.pdbx_DOI' 10 3 'Structure model' '_database_2.pdbx_database_accession' 11 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' # _pdbx_entry_details.entry_id 6VLJ _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'Prochlorosin 2.8' 33 ? mM 'natural abundance' 2 'Prochlorosin 2.8' 33 ? mM 'natural abundance' 3 'Prochlorosin 2.8' 33 ? mM 'natural abundance' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 4 ? ? 74.98 -28.37 2 1 HIS A 6 ? ? 70.94 -58.03 3 1 ALA A 7 ? ? 179.77 161.56 4 1 DAL A 9 ? ? -96.30 161.49 5 1 PRO A 11 ? ? -59.63 108.09 6 1 PRO A 12 ? ? -62.10 88.52 7 2 HIS A 4 ? ? 33.61 30.13 8 2 ASN A 5 ? ? -113.61 -131.09 9 2 ALA A 7 ? ? 59.10 171.12 10 2 DAL A 9 ? ? -96.01 174.20 11 2 PRO A 12 ? ? -69.75 88.09 12 2 GLU A 16 ? ? 43.46 21.86 13 3 CYS A 3 ? ? 74.92 -40.91 14 3 HIS A 4 ? ? 64.02 -2.70 15 3 ASN A 5 ? ? -129.09 -99.23 16 3 DAL A 9 ? ? -96.02 172.12 17 3 PRO A 12 ? ? -64.78 92.95 18 3 GLU A 16 ? ? 45.91 22.55 19 4 HIS A 4 ? ? 70.15 -40.38 20 4 ASN A 5 ? ? -135.11 -69.49 21 4 ALA A 7 ? ? -39.57 156.92 22 4 DAL A 9 ? ? -96.53 146.69 23 4 PRO A 12 ? ? -62.05 91.13 24 5 CYS A 3 ? ? -36.92 113.52 25 5 ASN A 5 ? ? -65.69 -115.41 26 5 DAL A 9 ? ? -96.04 138.73 27 5 MET A 10 ? ? -25.27 -53.97 28 5 PRO A 12 ? ? -65.48 89.82 29 6 CYS A 3 ? ? 70.08 -39.81 30 6 HIS A 4 ? ? 52.12 9.99 31 6 HIS A 6 ? ? -1.12 73.31 32 6 ALA A 7 ? ? 50.88 161.65 33 6 PRO A 8 ? ? -70.84 -165.98 34 6 DAL A 9 ? ? -151.84 173.54 35 6 PRO A 12 ? ? -65.22 89.74 36 6 GLU A 16 ? ? 43.58 20.03 37 7 ALA A 7 ? ? 170.43 159.09 38 7 DAL A 9 ? ? -152.45 175.52 39 7 PRO A 12 ? ? -63.73 90.97 40 7 GLU A 16 ? ? 42.08 28.09 41 8 ASN A 5 ? ? -98.07 -102.02 42 8 ALA A 7 ? ? -45.60 157.49 43 8 DAL A 9 ? ? -95.82 156.11 44 8 PRO A 12 ? ? -60.69 93.82 45 8 GLU A 16 ? ? 45.26 21.02 46 9 ALA A 7 ? ? -38.68 167.80 47 9 DAL A 9 ? ? -96.24 130.72 48 9 PRO A 11 ? ? -55.34 106.61 49 9 PRO A 12 ? ? -63.06 89.96 50 10 CYS A 3 ? ? -22.59 -104.01 51 10 ASN A 5 ? ? -137.44 -151.44 52 10 ALA A 7 ? ? 170.89 172.37 53 10 DAL A 9 ? ? -106.88 177.24 54 10 GLU A 16 ? ? 42.62 22.12 55 11 CYS A 3 ? ? -36.23 114.33 56 11 HIS A 6 ? ? 69.69 -178.19 57 11 ALA A 7 ? ? -28.14 133.01 58 11 PRO A 8 ? ? -67.81 -163.82 59 11 DAL A 9 ? ? -151.87 174.03 60 11 PRO A 11 ? ? -55.37 108.15 61 11 PRO A 12 ? ? -63.01 90.09 62 11 GLU A 16 ? ? 84.90 17.48 63 12 HIS A 4 ? ? 70.89 -74.92 64 12 HIS A 6 ? ? 69.75 -167.28 65 12 DAL A 9 ? ? -97.06 163.34 66 12 PRO A 12 ? ? -62.27 90.71 67 12 GLU A 16 ? ? 43.72 25.10 68 13 ALA A 7 ? ? -31.16 154.03 69 13 DAL A 9 ? ? -96.16 155.96 70 13 PRO A 11 ? ? -55.31 107.51 71 13 PRO A 12 ? ? -62.60 89.70 72 14 HIS A 4 ? ? 52.02 10.40 73 14 ASN A 5 ? ? 73.20 166.94 74 14 HIS A 6 ? ? 16.57 -84.04 75 14 DAL A 9 ? ? -149.16 168.93 76 14 PRO A 12 ? ? -69.89 88.98 77 14 GLU A 16 ? ? 33.52 72.36 78 15 ALA A 7 ? ? 58.82 148.61 79 15 DAL A 9 ? ? -95.76 165.80 80 15 PRO A 12 ? ? -64.57 91.75 81 15 GLU A 16 ? ? 44.40 22.45 82 15 GLU A 18 ? ? -113.39 -82.48 83 16 ALA A 7 ? ? 71.64 176.71 84 16 DAL A 9 ? ? -96.26 134.94 85 16 PRO A 12 ? ? -68.92 89.02 86 16 GLU A 16 ? ? 83.95 4.28 87 17 CYS A 3 ? ? -133.52 -88.73 88 17 ASN A 5 ? ? 59.36 -166.81 89 17 ALA A 7 ? ? 57.29 139.46 90 17 DAL A 9 ? ? -96.50 176.72 91 17 PRO A 12 ? ? -64.64 92.25 92 18 HIS A 6 ? ? -55.15 -79.11 93 18 ALA A 7 ? ? 32.00 102.42 94 18 DAL A 9 ? ? -94.02 174.06 95 18 PRO A 12 ? ? -48.52 84.21 96 19 ASN A 5 ? ? -113.30 -75.99 97 19 ALA A 7 ? ? -43.30 175.52 98 19 DAL A 9 ? ? -96.64 158.62 99 19 MET A 10 ? ? -93.08 -60.85 100 19 PRO A 12 ? ? -46.27 87.59 101 19 GLU A 16 ? ? 43.46 19.11 102 20 HIS A 4 ? ? 81.35 85.39 103 20 ASN A 5 ? ? 162.71 -174.28 104 20 ALA A 7 ? ? 155.82 -46.87 105 20 DAL A 9 ? ? -96.14 136.23 106 20 PRO A 11 ? ? -49.88 109.18 107 20 PRO A 12 ? ? -60.01 84.54 108 20 GLU A 16 ? ? 85.11 23.47 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number R37GM058822 _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id DAL _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id DAL _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'mass spectrometry' _pdbx_struct_assembly_auth_evidence.details ? #