HEADER IMMUNE SYSTEM 27-JAN-20 6VMC TITLE T4H2 T CELL RECEPTOR BOUND TO HLA-A2 PRESENTING GP100T2L PEPTIDE TITLE 2 (ILDQVPFSV) COMPND MOL_ID: 1; COMPND 2 MOLECULE: T4H2 T CELL RECEPTOR ALPHA CHAIN; COMPND 3 CHAIN: D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: T4H2 T CELL RECEPTOR BETA CHAIN; COMPND 8 CHAIN: E; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: MHC CLASS I ANTIGEN, A-2 ALPHA CHAIN; COMPND 13 CHAIN: A; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 17 CHAIN: B; COMPND 18 ENGINEERED: YES; COMPND 19 MOL_ID: 5; COMPND 20 MOLECULE: MELANOCYTE PROTEIN PMEL; COMPND 21 CHAIN: C; COMPND 22 FRAGMENT: EPITOPE (UNP RESIDUES 209-217); COMPND 23 SYNONYM: ME20-M,ME20M,MELANOCYTE PROTEIN PMEL 17,MELANOCYTES LINEAGE- COMPND 24 SPECIFIC ANTIGEN GP100,MELANOMA-ASSOCIATED ME20 ANTIGEN,P1,P100, COMPND 25 PREMELANOSOME PROTEIN,SILVER LOCUS PROTEIN HOMOLOG; COMPND 26 ENGINEERED: YES; COMPND 27 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRAV12-2, TRAC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGMT7; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: TRBV19, TRBC2; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGMT7; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 23 ORGANISM_COMMON: HUMAN; SOURCE 24 ORGANISM_TAXID: 9606; SOURCE 25 GENE: HLA-A; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 28 EXPRESSION_SYSTEM_STRAIN: XL1-BLUE; SOURCE 29 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 30 EXPRESSION_SYSTEM_PLASMID: PHN1; SOURCE 31 MOL_ID: 4; SOURCE 32 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 33 ORGANISM_COMMON: HUMAN; SOURCE 34 ORGANISM_TAXID: 9606; SOURCE 35 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 36 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 37 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 38 EXPRESSION_SYSTEM_STRAIN: XL1-BLUE; SOURCE 39 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 40 EXPRESSION_SYSTEM_PLASMID: PHN1; SOURCE 41 MOL_ID: 5; SOURCE 42 SYNTHETIC: YES; SOURCE 43 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 44 ORGANISM_COMMON: HUMAN; SOURCE 45 ORGANISM_TAXID: 9606 KEYWDS TCR, MHC CLASS I, HLA A2, MELANOMA, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.R.SMITH,B.M.BAKER REVDAT 3 11-OCT-23 6VMC 1 REMARK REVDAT 2 27-JAN-21 6VMC 1 JRNL REVDAT 1 20-JAN-21 6VMC 0 JRNL AUTH A.R.SMITH,J.A.ALONSO,C.M.AYRES,N.K.SINGH,L.M.HELLMAN, JRNL AUTH 2 B.M.BAKER JRNL TITL STRUCTURALLY SILENT PEPTIDE ANCHOR MODIFICATIONS JRNL TITL 2 ALLOSTERICALLY MODULATE T CELL RECOGNITION IN A JRNL TITL 3 RECEPTOR-DEPENDENT MANNER JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 25118 2021 JRNL REFN ESSN 1091-6490 JRNL DOI 10.1073/PNAS.2018125118 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 25615 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.7400 - 6.8300 0.98 1710 145 0.1632 0.2099 REMARK 3 2 6.8300 - 5.4400 1.00 1709 138 0.1870 0.2353 REMARK 3 3 5.4400 - 4.7600 1.00 1694 149 0.1565 0.1948 REMARK 3 4 4.7600 - 4.3200 1.00 1701 145 0.1458 0.1771 REMARK 3 5 4.3200 - 4.0200 1.00 1698 139 0.1712 0.2119 REMARK 3 6 4.0200 - 3.7800 1.00 1697 137 0.1979 0.2378 REMARK 3 7 3.7800 - 3.5900 1.00 1686 139 0.2082 0.2429 REMARK 3 8 3.5900 - 3.4400 1.00 1702 147 0.2199 0.2538 REMARK 3 9 3.4400 - 3.3000 1.00 1683 145 0.2216 0.2543 REMARK 3 10 3.3000 - 3.1900 1.00 1696 147 0.2399 0.3136 REMARK 3 11 3.1900 - 3.0900 1.00 1674 143 0.2521 0.3169 REMARK 3 12 3.0900 - 3.0000 1.00 1685 144 0.2772 0.2952 REMARK 3 13 3.0000 - 2.9200 1.00 1691 145 0.2840 0.3144 REMARK 3 14 2.9200 - 2.8500 0.96 1592 134 0.2872 0.3804 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.413 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.973 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6830 REMARK 3 ANGLE : 0.446 9277 REMARK 3 CHIRALITY : 0.042 965 REMARK 3 PLANARITY : 0.003 1218 REMARK 3 DIHEDRAL : 18.105 2510 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 28 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 2 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 86.5595 -30.5393 19.2052 REMARK 3 T TENSOR REMARK 3 T11: 0.6098 T22: 0.6037 REMARK 3 T33: 0.8127 T12: -0.2028 REMARK 3 T13: -0.1357 T23: -0.1579 REMARK 3 L TENSOR REMARK 3 L11: 5.4701 L22: 1.9214 REMARK 3 L33: 5.1818 L12: -0.7162 REMARK 3 L13: 0.8083 L23: 2.9405 REMARK 3 S TENSOR REMARK 3 S11: 0.0170 S12: 0.2448 S13: -1.3647 REMARK 3 S21: -1.6458 S22: 0.4360 S23: 0.6251 REMARK 3 S31: 0.7939 S32: -0.0578 S33: -0.4830 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 23 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 87.4810 -21.1341 27.0018 REMARK 3 T TENSOR REMARK 3 T11: 0.4580 T22: 0.7244 REMARK 3 T33: 0.4210 T12: -0.2293 REMARK 3 T13: 0.0413 T23: -0.0628 REMARK 3 L TENSOR REMARK 3 L11: 8.1740 L22: 4.4717 REMARK 3 L33: 1.6781 L12: 1.3198 REMARK 3 L13: 1.3706 L23: 0.8721 REMARK 3 S TENSOR REMARK 3 S11: -0.2895 S12: -0.5071 S13: -1.0237 REMARK 3 S21: -0.5366 S22: 0.4829 S23: -0.2397 REMARK 3 S31: 0.6117 S32: -0.3063 S33: -0.1345 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 55 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 94.8006 -27.5114 28.5129 REMARK 3 T TENSOR REMARK 3 T11: 0.4351 T22: 0.6586 REMARK 3 T33: 0.7367 T12: -0.1233 REMARK 3 T13: 0.0771 T23: -0.1048 REMARK 3 L TENSOR REMARK 3 L11: 4.5221 L22: 4.5558 REMARK 3 L33: 3.8262 L12: 4.3944 REMARK 3 L13: -1.1022 L23: -0.1875 REMARK 3 S TENSOR REMARK 3 S11: -0.5184 S12: 0.5075 S13: -1.1682 REMARK 3 S21: -0.3216 S22: 0.5864 S23: -1.3156 REMARK 3 S31: 0.6358 S32: -0.3213 S33: 0.0815 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 78 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 85.2658 -22.6004 25.3844 REMARK 3 T TENSOR REMARK 3 T11: 0.3151 T22: 0.6030 REMARK 3 T33: 0.3627 T12: -0.1912 REMARK 3 T13: 0.0663 T23: -0.0904 REMARK 3 L TENSOR REMARK 3 L11: 6.2741 L22: 6.8382 REMARK 3 L33: 3.5340 L12: 0.5562 REMARK 3 L13: -1.3702 L23: -2.4787 REMARK 3 S TENSOR REMARK 3 S11: -0.1199 S12: -0.4908 S13: -0.4805 REMARK 3 S21: 0.0642 S22: 0.0414 S23: 0.5470 REMARK 3 S31: 0.2158 S32: -0.0562 S33: 0.1309 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 106 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 78.0792 -47.0504 22.8528 REMARK 3 T TENSOR REMARK 3 T11: 1.0461 T22: 0.4067 REMARK 3 T33: 1.2936 T12: -0.1688 REMARK 3 T13: 0.0850 T23: -0.0232 REMARK 3 L TENSOR REMARK 3 L11: 5.8577 L22: 5.7286 REMARK 3 L33: 0.9697 L12: 5.7537 REMARK 3 L13: 0.5677 L23: 0.2874 REMARK 3 S TENSOR REMARK 3 S11: 0.1560 S12: -0.1120 S13: -1.2322 REMARK 3 S21: 0.0156 S22: -0.3230 S23: -0.5453 REMARK 3 S31: 0.1784 S32: 0.2749 S33: -0.0530 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 120 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.0263 -50.4131 19.1650 REMARK 3 T TENSOR REMARK 3 T11: 1.1999 T22: 0.8190 REMARK 3 T33: 0.8725 T12: -0.4016 REMARK 3 T13: -0.1028 T23: -0.1422 REMARK 3 L TENSOR REMARK 3 L11: 3.9546 L22: 9.0881 REMARK 3 L33: 7.3183 L12: -1.5081 REMARK 3 L13: 0.3373 L23: -4.4181 REMARK 3 S TENSOR REMARK 3 S11: 1.0594 S12: 0.2616 S13: -1.4505 REMARK 3 S21: -0.3323 S22: 0.0962 S23: 1.2260 REMARK 3 S31: 1.3328 S32: -1.5359 S33: -0.7523 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 133 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.8264 -46.6710 12.8424 REMARK 3 T TENSOR REMARK 3 T11: 1.2533 T22: 0.8194 REMARK 3 T33: 0.7359 T12: -0.2114 REMARK 3 T13: 0.1713 T23: -0.2472 REMARK 3 L TENSOR REMARK 3 L11: 6.8134 L22: 6.2309 REMARK 3 L33: 3.3185 L12: -0.7232 REMARK 3 L13: -1.6085 L23: -0.5968 REMARK 3 S TENSOR REMARK 3 S11: 0.3620 S12: 1.4831 S13: -0.8265 REMARK 3 S21: -1.0825 S22: -0.5313 S23: -0.8119 REMARK 3 S31: -0.1090 S32: 0.2043 S33: 0.0943 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 154 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.2040 -45.5031 24.5075 REMARK 3 T TENSOR REMARK 3 T11: 0.8753 T22: 0.5625 REMARK 3 T33: 0.7060 T12: 0.1366 REMARK 3 T13: -0.0230 T23: -0.1956 REMARK 3 L TENSOR REMARK 3 L11: 6.6110 L22: 7.0655 REMARK 3 L33: 8.6020 L12: 1.2682 REMARK 3 L13: 2.3096 L23: 2.4799 REMARK 3 S TENSOR REMARK 3 S11: -0.4615 S12: -0.1894 S13: -0.8161 REMARK 3 S21: 0.3227 S22: 0.3269 S23: -1.0362 REMARK 3 S31: 0.5641 S32: 0.5043 S33: -0.0530 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 169 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.5108 -48.0289 14.1300 REMARK 3 T TENSOR REMARK 3 T11: 1.3914 T22: 0.7450 REMARK 3 T33: 0.8736 T12: -0.3686 REMARK 3 T13: -0.0230 T23: -0.4964 REMARK 3 L TENSOR REMARK 3 L11: 1.4188 L22: 3.7198 REMARK 3 L33: 2.7941 L12: 0.0552 REMARK 3 L13: -1.4405 L23: 2.1736 REMARK 3 S TENSOR REMARK 3 S11: 0.8722 S12: 0.8304 S13: -1.3005 REMARK 3 S21: -0.5467 S22: -0.1795 S23: 0.6022 REMARK 3 S31: 1.0096 S32: 0.4688 S33: -1.5496 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 189 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.4006 -55.3080 10.7578 REMARK 3 T TENSOR REMARK 3 T11: 1.4784 T22: 1.0048 REMARK 3 T33: 0.9926 T12: 0.0579 REMARK 3 T13: 0.1126 T23: -0.3410 REMARK 3 L TENSOR REMARK 3 L11: 3.1126 L22: 7.2398 REMARK 3 L33: 7.0855 L12: -1.7301 REMARK 3 L13: 1.1108 L23: 3.7189 REMARK 3 S TENSOR REMARK 3 S11: 0.5102 S12: 2.4057 S13: -1.2532 REMARK 3 S21: -2.2413 S22: -0.2377 S23: -0.4381 REMARK 3 S31: 1.0844 S32: -0.0917 S33: -0.2411 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 2 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 70.0557 -8.7486 24.1156 REMARK 3 T TENSOR REMARK 3 T11: 0.1991 T22: 1.0546 REMARK 3 T33: 0.4211 T12: -0.2841 REMARK 3 T13: 0.0759 T23: -0.0406 REMARK 3 L TENSOR REMARK 3 L11: 3.8468 L22: 2.8664 REMARK 3 L33: 0.3752 L12: 0.2353 REMARK 3 L13: -0.6723 L23: 0.0086 REMARK 3 S TENSOR REMARK 3 S11: 0.0114 S12: -0.3793 S13: -0.0977 REMARK 3 S21: -0.4606 S22: 0.3113 S23: 0.2213 REMARK 3 S31: -0.0877 S32: -0.3388 S33: 0.1147 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 94 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.0172 -17.0740 23.2542 REMARK 3 T TENSOR REMARK 3 T11: 0.1840 T22: 1.0641 REMARK 3 T33: 0.4778 T12: -0.1582 REMARK 3 T13: 0.0340 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 0.6667 L22: 2.0157 REMARK 3 L33: -0.0086 L12: 1.1803 REMARK 3 L13: 0.0837 L23: 0.1864 REMARK 3 S TENSOR REMARK 3 S11: -0.5213 S12: -0.0059 S13: -0.1297 REMARK 3 S21: -0.3782 S22: 0.5918 S23: 0.1929 REMARK 3 S31: 0.0078 S32: 0.2089 S33: -0.2884 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 121 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.8406 -39.7556 23.2011 REMARK 3 T TENSOR REMARK 3 T11: 0.5279 T22: 0.4178 REMARK 3 T33: 0.5722 T12: -0.1849 REMARK 3 T13: -0.0425 T23: -0.0674 REMARK 3 L TENSOR REMARK 3 L11: 2.1826 L22: 1.9810 REMARK 3 L33: 4.2867 L12: -0.9496 REMARK 3 L13: 0.0935 L23: -0.9458 REMARK 3 S TENSOR REMARK 3 S11: 0.1539 S12: 0.1703 S13: -0.4645 REMARK 3 S21: -0.3932 S22: -0.1137 S23: -0.4342 REMARK 3 S31: 0.5730 S32: -0.1087 S33: 0.0034 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 187 THROUGH 241 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.6545 -37.0490 28.6862 REMARK 3 T TENSOR REMARK 3 T11: 0.4498 T22: 0.6059 REMARK 3 T33: 0.3837 T12: -0.2176 REMARK 3 T13: -0.0622 T23: 0.0597 REMARK 3 L TENSOR REMARK 3 L11: 3.9439 L22: 4.3422 REMARK 3 L33: 2.4006 L12: -1.4505 REMARK 3 L13: -0.5255 L23: -0.9463 REMARK 3 S TENSOR REMARK 3 S11: 0.2014 S12: -0.2158 S13: -0.5156 REMARK 3 S21: -0.0522 S22: 0.0632 S23: 0.1582 REMARK 3 S31: 0.4768 S32: -0.6024 S33: -0.2512 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 107.4557 -21.4805 -5.8148 REMARK 3 T TENSOR REMARK 3 T11: 0.5384 T22: 0.3331 REMARK 3 T33: 0.3813 T12: -0.1042 REMARK 3 T13: 0.1463 T23: -0.1750 REMARK 3 L TENSOR REMARK 3 L11: 3.4036 L22: 3.0871 REMARK 3 L33: 3.7488 L12: -0.2755 REMARK 3 L13: -0.8781 L23: -0.5124 REMARK 3 S TENSOR REMARK 3 S11: -0.1759 S12: -0.1090 S13: 0.0377 REMARK 3 S21: -0.1421 S22: -0.1663 S23: 0.4813 REMARK 3 S31: 0.1693 S32: -0.6552 S33: 0.2494 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 105.7247 -23.4134 -17.4594 REMARK 3 T TENSOR REMARK 3 T11: 0.7010 T22: 0.4636 REMARK 3 T33: 0.3034 T12: -0.1755 REMARK 3 T13: 0.0489 T23: -0.1432 REMARK 3 L TENSOR REMARK 3 L11: 3.0621 L22: 4.5490 REMARK 3 L33: 1.0191 L12: -0.2069 REMARK 3 L13: 1.5366 L23: 0.9494 REMARK 3 S TENSOR REMARK 3 S11: -0.1496 S12: 0.4822 S13: 0.1818 REMARK 3 S21: -0.8213 S22: -0.3615 S23: 0.1498 REMARK 3 S31: -0.3078 S32: -0.5589 S33: 0.2492 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 106.9476 -32.6485 -4.3894 REMARK 3 T TENSOR REMARK 3 T11: 0.8312 T22: 0.3631 REMARK 3 T33: 0.4558 T12: -0.1129 REMARK 3 T13: 0.1940 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 3.4702 L22: 1.6440 REMARK 3 L33: 3.2666 L12: 0.1285 REMARK 3 L13: -0.4848 L23: -0.8440 REMARK 3 S TENSOR REMARK 3 S11: -0.3218 S12: -0.4831 S13: -0.4147 REMARK 3 S21: 0.2317 S22: -0.1735 S23: 0.2379 REMARK 3 S31: 1.4281 S32: -0.4365 S33: 0.4322 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 117.3073 -24.2447 3.9565 REMARK 3 T TENSOR REMARK 3 T11: 0.6466 T22: 0.4420 REMARK 3 T33: 0.3905 T12: -0.1376 REMARK 3 T13: 0.1089 T23: -0.1403 REMARK 3 L TENSOR REMARK 3 L11: 3.1495 L22: 2.6398 REMARK 3 L33: 1.6593 L12: -1.3425 REMARK 3 L13: 0.4706 L23: 0.3403 REMARK 3 S TENSOR REMARK 3 S11: -0.0853 S12: -0.7672 S13: 0.2293 REMARK 3 S21: 0.5096 S22: -0.0914 S23: -0.1620 REMARK 3 S31: 0.0257 S32: -0.1969 S33: 0.0930 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): 121.6552 -33.7138 4.8099 REMARK 3 T TENSOR REMARK 3 T11: 0.7047 T22: 0.4394 REMARK 3 T33: 0.3840 T12: -0.1551 REMARK 3 T13: -0.0074 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 7.9437 L22: 6.3154 REMARK 3 L33: 4.7928 L12: -1.6144 REMARK 3 L13: -3.2670 L23: -1.7892 REMARK 3 S TENSOR REMARK 3 S11: 0.1390 S12: -1.3780 S13: -0.3383 REMARK 3 S21: 0.3857 S22: 0.1786 S23: -0.3479 REMARK 3 S31: 0.3796 S32: 0.6717 S33: -0.3416 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 122.5962 -23.1843 -17.1867 REMARK 3 T TENSOR REMARK 3 T11: 0.6538 T22: 0.2959 REMARK 3 T33: 0.4472 T12: -0.0771 REMARK 3 T13: 0.2353 T23: -0.0988 REMARK 3 L TENSOR REMARK 3 L11: 2.4680 L22: 2.4801 REMARK 3 L33: 5.3443 L12: 1.8253 REMARK 3 L13: 1.0479 L23: -1.5746 REMARK 3 S TENSOR REMARK 3 S11: 0.2538 S12: 0.1201 S13: 0.1451 REMARK 3 S21: -1.1278 S22: 0.3451 S23: -0.9661 REMARK 3 S31: 0.7936 S32: 0.1240 S33: 0.3626 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 113.9248 6.1342 -11.2727 REMARK 3 T TENSOR REMARK 3 T11: 0.5602 T22: 0.3677 REMARK 3 T33: 1.0477 T12: -0.0777 REMARK 3 T13: 0.0996 T23: -0.0983 REMARK 3 L TENSOR REMARK 3 L11: 1.5747 L22: 3.2416 REMARK 3 L33: 3.7478 L12: -1.3284 REMARK 3 L13: -0.2195 L23: 0.8215 REMARK 3 S TENSOR REMARK 3 S11: 0.0748 S12: 0.0635 S13: 0.7809 REMARK 3 S21: -0.4819 S22: -0.3539 S23: 0.2906 REMARK 3 S31: -0.6316 S32: -0.2891 S33: 0.2502 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 219 ) REMARK 3 ORIGIN FOR THE GROUP (A): 115.9377 7.7174 -4.9228 REMARK 3 T TENSOR REMARK 3 T11: 0.5603 T22: 0.2324 REMARK 3 T33: 0.8706 T12: -0.0591 REMARK 3 T13: -0.0096 T23: -0.1189 REMARK 3 L TENSOR REMARK 3 L11: 2.5661 L22: 9.1872 REMARK 3 L33: 4.3581 L12: 1.6743 REMARK 3 L13: 1.1729 L23: 2.9021 REMARK 3 S TENSOR REMARK 3 S11: 0.0334 S12: -0.7293 S13: 0.6034 REMARK 3 S21: 0.2626 S22: -0.2586 S23: 0.2312 REMARK 3 S31: -0.2244 S32: -0.3044 S33: 0.2377 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 220 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): 117.3568 10.3977 -3.9504 REMARK 3 T TENSOR REMARK 3 T11: 0.5802 T22: 0.3807 REMARK 3 T33: 0.8784 T12: -0.0867 REMARK 3 T13: 0.0165 T23: -0.1078 REMARK 3 L TENSOR REMARK 3 L11: 1.0202 L22: 3.6916 REMARK 3 L33: 2.9611 L12: 1.5893 REMARK 3 L13: 0.8414 L23: 1.5862 REMARK 3 S TENSOR REMARK 3 S11: 0.1137 S12: -0.2715 S13: 0.9632 REMARK 3 S21: 0.3635 S22: -0.5510 S23: 0.3673 REMARK 3 S31: -0.2203 S32: -0.2631 S33: 0.3733 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 102.8755 -6.6274 4.1142 REMARK 3 T TENSOR REMARK 3 T11: 0.8412 T22: 0.5816 REMARK 3 T33: 0.5825 T12: 0.0345 REMARK 3 T13: 0.0654 T23: -0.3590 REMARK 3 L TENSOR REMARK 3 L11: 2.9753 L22: 4.7415 REMARK 3 L33: 2.0745 L12: 0.0697 REMARK 3 L13: -0.6393 L23: -2.8058 REMARK 3 S TENSOR REMARK 3 S11: -0.3079 S12: -0.6686 S13: 0.5528 REMARK 3 S21: 0.8784 S22: 0.0637 S23: 0.2280 REMARK 3 S31: 0.5678 S32: -0.1424 S33: 0.2168 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 13 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 98.6348 -6.3595 -6.1327 REMARK 3 T TENSOR REMARK 3 T11: 0.4910 T22: 0.4403 REMARK 3 T33: 0.6928 T12: -0.0954 REMARK 3 T13: 0.0807 T23: -0.2557 REMARK 3 L TENSOR REMARK 3 L11: 7.1892 L22: 5.6230 REMARK 3 L33: 3.7642 L12: -4.3786 REMARK 3 L13: 1.8668 L23: -2.3115 REMARK 3 S TENSOR REMARK 3 S11: 0.0824 S12: -0.0505 S13: 0.9894 REMARK 3 S21: 0.0548 S22: -0.4173 S23: 0.3649 REMARK 3 S31: -0.1938 S32: -0.3614 S33: 0.2808 REMARK 3 TLS GROUP : 26 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 96.0549 -0.8631 -9.5330 REMARK 3 T TENSOR REMARK 3 T11: 0.5037 T22: 0.5603 REMARK 3 T33: 0.8402 T12: 0.0607 REMARK 3 T13: 0.1090 T23: -0.1172 REMARK 3 L TENSOR REMARK 3 L11: 6.9881 L22: 1.3061 REMARK 3 L33: 7.6408 L12: -1.9033 REMARK 3 L13: 1.9340 L23: -2.8819 REMARK 3 S TENSOR REMARK 3 S11: -0.1662 S12: 0.8036 S13: 1.0050 REMARK 3 S21: 0.4950 S22: -0.0022 S23: 0.0919 REMARK 3 S31: -0.6551 S32: -1.0898 S33: 0.0011 REMARK 3 TLS GROUP : 27 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 79 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 95.0268 -0.0642 0.9926 REMARK 3 T TENSOR REMARK 3 T11: 0.6293 T22: 0.5893 REMARK 3 T33: 0.8903 T12: 0.0531 REMARK 3 T13: 0.2320 T23: -0.2888 REMARK 3 L TENSOR REMARK 3 L11: 2.8425 L22: 4.3109 REMARK 3 L33: 5.4594 L12: -1.7675 REMARK 3 L13: 3.5432 L23: -3.0336 REMARK 3 S TENSOR REMARK 3 S11: -0.1286 S12: -0.5022 S13: 0.3442 REMARK 3 S21: -0.1187 S22: -0.2089 S23: -0.1154 REMARK 3 S31: 0.1078 S32: -1.0861 S33: 0.3391 REMARK 3 TLS GROUP : 28 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 114.6849 -33.3914 -3.3389 REMARK 3 T TENSOR REMARK 3 T11: 0.7759 T22: 0.4565 REMARK 3 T33: 0.1949 T12: -0.2307 REMARK 3 T13: 0.1231 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 3.6492 L22: 3.5044 REMARK 3 L33: 1.8680 L12: -2.7823 REMARK 3 L13: 0.9814 L23: -2.2363 REMARK 3 S TENSOR REMARK 3 S11: 0.1489 S12: -0.8953 S13: -0.1279 REMARK 3 S21: 0.2535 S22: 0.0246 S23: 0.4018 REMARK 3 S31: 0.0270 S32: -0.4088 S33: 0.0060 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VMC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246558. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25782 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.80 REMARK 200 R MERGE (I) : 0.19700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.90 REMARK 200 R MERGE FOR SHELL (I) : 1.18200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1TVH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% V/V PEG10000, 16% V/V GLYCEROL, REMARK 280 250 MM TRIS PH 8.5, 60 MM SODIUM CHLORIDE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.55200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.10400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 38.55200 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.10400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 64.76600 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 -112.17800 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -38.55200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET D 1 REMARK 465 PRO D 203 REMARK 465 GLU D 204 REMARK 465 SER D 205 REMARK 465 SER D 206 REMARK 465 MET E 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER D 181 -0.70 67.61 REMARK 500 PRO D 195 43.15 -84.72 REMARK 500 GLU D 196 15.73 53.79 REMARK 500 PRO E 149 -167.50 -78.56 REMARK 500 ASP A 29 -123.59 62.62 REMARK 500 PRO B 33 -164.74 -76.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 DBREF 6VMC D 1 206 PDB 6VMC 6VMC 1 206 DBREF 6VMC E 1 241 PDB 6VMC 6VMC 1 241 DBREF1 6VMC A 1 275 UNP A0A5B8RNS7_HUMAN DBREF2 6VMC A A0A5B8RNS7 25 299 DBREF 6VMC B 2 100 UNP P61769 B2MG_HUMAN 21 119 DBREF 6VMC C 1 9 UNP P40967 PMEL_HUMAN 209 217 SEQADV 6VMC MET B 1 UNP P61769 INITIATING METHIONINE SEQADV 6VMC LEU C 2 UNP P40967 THR 210 ENGINEERED MUTATION SEQRES 1 D 206 MET GLN LYS GLU VAL GLU GLN ASN SER GLY PRO LEU SER SEQRES 2 D 206 VAL PRO GLU GLY ALA ILE ALA SER LEU ASN CYS THR TYR SEQRES 3 D 206 SER ASP ARG GLY SER GLN SER PHE PHE TRP TYR ARG GLN SEQRES 4 D 206 TYR SER GLY LYS SER PRO GLU LEU ILE MET SER ILE TYR SEQRES 5 D 206 SER ASN GLY ASP LYS GLU ASP GLY ARG PHE THR ALA GLN SEQRES 6 D 206 LEU ASN LYS ALA SER GLN TYR VAL SER LEU LEU ILE ARG SEQRES 7 D 206 ASP SER GLN PRO SER ASP SER ALA THR TYR LEU CYS ALA SEQRES 8 D 206 VAL ASN ALA LEU LEU GLY ASN GLN PHE TYR PHE GLY THR SEQRES 9 D 206 GLY THR SER LEU THR VAL ILE PRO ASN ILE GLN ASN PRO SEQRES 10 D 206 ASP PRO ALA VAL TYR GLN LEU ARG ASP SER LYS SER SER SEQRES 11 D 206 ASP LYS SER VAL CYS LEU PHE THR ASP PHE ASP SER GLN SEQRES 12 D 206 THR ASN VAL SER GLN SER LYS ASP SER ASP VAL TYR ILE SEQRES 13 D 206 THR ASP LYS CYS VAL LEU ASP MET ARG SER MET ASP PHE SEQRES 14 D 206 LYS SER ASN SER ALA VAL ALA TRP SER ASN LYS SER ASP SEQRES 15 D 206 PHE ALA CYS ALA ASN ALA PHE ASN ASN SER ILE ILE PRO SEQRES 16 D 206 GLU ASP THR PHE PHE PRO SER PRO GLU SER SER SEQRES 1 E 241 MET GLY ILE THR GLN SER PRO LYS TYR LEU PHE ARG LYS SEQRES 2 E 241 GLU GLY GLN ASN VAL THR LEU SER CYS GLU GLN ASN LEU SEQRES 3 E 241 ASN HIS ASP ALA MET TYR TRP TYR ARG GLN ASP PRO GLY SEQRES 4 E 241 GLN GLY LEU ARG LEU ILE TYR TYR SER GLN ILE VAL ASN SEQRES 5 E 241 ASP PHE GLN LYS GLY ASP ILE ALA GLU GLY TYR SER VAL SEQRES 6 E 241 SER ARG GLU LYS LYS GLU SER PHE PRO LEU THR VAL THR SEQRES 7 E 241 SER ALA GLN LYS ASN PRO THR ALA PHE TYR LEU CYS ALA SEQRES 8 E 241 SER SER MET GLY GLY THR TYR GLU GLN TYR PHE GLY PRO SEQRES 9 E 241 GLY THR ARG LEU THR VAL THR GLU ASP LEU LYS ASN VAL SEQRES 10 E 241 PHE PRO PRO GLU VAL ALA VAL PHE GLU PRO SER GLU ALA SEQRES 11 E 241 GLU ILE SER HIS THR GLN LYS ALA THR LEU VAL CYS LEU SEQRES 12 E 241 ALA THR GLY PHE TYR PRO ASP HIS VAL GLU LEU SER TRP SEQRES 13 E 241 TRP VAL ASN GLY LYS GLU VAL HIS SER GLY VAL CYS THR SEQRES 14 E 241 ASP PRO GLN PRO LEU LYS GLU GLN PRO ALA LEU ASN ASP SEQRES 15 E 241 SER ARG TYR ALA LEU SER SER ARG LEU ARG VAL SER ALA SEQRES 16 E 241 THR PHE TRP GLN ASP PRO ARG ASN HIS PHE ARG CYS GLN SEQRES 17 E 241 VAL GLN PHE TYR GLY LEU SER GLU ASN ASP GLU TRP THR SEQRES 18 E 241 GLN ASP ARG ALA LYS PRO VAL THR GLN ILE VAL SER ALA SEQRES 19 E 241 GLU ALA TRP GLY ARG ALA ASP SEQRES 1 A 275 GLY SER HIS SER MET ARG TYR PHE PHE THR SER VAL SER SEQRES 2 A 275 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL GLY SEQRES 3 A 275 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 275 ALA ALA SER GLN ARG MET GLU PRO ARG ALA PRO TRP ILE SEQRES 5 A 275 GLU GLN GLU GLY PRO GLU TYR TRP ASP GLY GLU THR ARG SEQRES 6 A 275 LYS VAL LYS ALA HIS SER GLN THR HIS ARG VAL ASP LEU SEQRES 7 A 275 GLY THR LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 A 275 SER HIS THR VAL GLN ARG MET TYR GLY CYS ASP VAL GLY SEQRES 9 A 275 SER ASP TRP ARG PHE LEU ARG GLY TYR HIS GLN TYR ALA SEQRES 10 A 275 TYR ASP GLY LYS ASP TYR ILE ALA LEU LYS GLU ASP LEU SEQRES 11 A 275 ARG SER TRP THR ALA ALA ASP MET ALA ALA GLN THR THR SEQRES 12 A 275 LYS HIS LYS TRP GLU ALA ALA HIS VAL ALA GLU GLN LEU SEQRES 13 A 275 ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU ARG SEQRES 14 A 275 ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG THR SEQRES 15 A 275 ASP ALA PRO LYS THR HIS MET THR HIS HIS ALA VAL SER SEQRES 16 A 275 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU SER PHE SEQRES 17 A 275 TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY SEQRES 18 A 275 GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG SEQRES 19 A 275 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 A 275 VAL VAL PRO SER GLY GLN GLU GLN ARG TYR THR CYS HIS SEQRES 21 A 275 VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU ARG SEQRES 22 A 275 TRP GLU SEQRES 1 B 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 9 ILE LEU ASP GLN VAL PRO PHE SER VAL HET GOL A 301 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *13(H2 O) HELIX 1 AA1 GLN D 81 SER D 85 5 5 HELIX 2 AA2 ASP E 113 VAL E 117 5 5 HELIX 3 AA3 SER E 128 GLN E 136 1 9 HELIX 4 AA4 ALA E 195 GLN E 199 1 5 HELIX 5 AA5 PRO A 50 GLU A 55 5 6 HELIX 6 AA6 GLY A 56 TYR A 85 1 30 HELIX 7 AA7 ASP A 137 ALA A 149 1 13 HELIX 8 AA8 HIS A 151 GLU A 161 1 11 HELIX 9 AA9 GLY A 162 GLY A 175 1 14 HELIX 10 AB1 GLY A 175 GLN A 180 1 6 HELIX 11 AB2 GLN A 253 GLN A 255 5 3 SHEET 1 AA1 2 VAL D 5 GLU D 6 0 SHEET 2 AA1 2 THR D 25 TYR D 26 -1 O THR D 25 N GLU D 6 SHEET 1 AA2 5 LEU D 12 PRO D 15 0 SHEET 2 AA2 5 THR D 106 ILE D 111 1 O SER D 107 N LEU D 12 SHEET 3 AA2 5 THR D 87 ALA D 94 -1 N TYR D 88 O THR D 106 SHEET 4 AA2 5 PHE D 34 GLN D 39 -1 N TYR D 37 O LEU D 89 SHEET 5 AA2 5 GLU D 46 ILE D 51 -1 O GLU D 46 N ARG D 38 SHEET 1 AA3 4 LEU D 12 PRO D 15 0 SHEET 2 AA3 4 THR D 106 ILE D 111 1 O SER D 107 N LEU D 12 SHEET 3 AA3 4 THR D 87 ALA D 94 -1 N TYR D 88 O THR D 106 SHEET 4 AA3 4 GLN D 99 PHE D 102 -1 O TYR D 101 N VAL D 92 SHEET 1 AA4 4 ALA D 20 LEU D 22 0 SHEET 2 AA4 4 TYR D 72 ILE D 77 -1 O LEU D 75 N LEU D 22 SHEET 3 AA4 4 PHE D 62 ASN D 67 -1 N GLN D 65 O SER D 74 SHEET 4 AA4 4 GLY D 55 ASP D 59 -1 N LYS D 57 O ALA D 64 SHEET 1 AA5 4 ALA D 120 ARG D 125 0 SHEET 2 AA5 4 SER D 133 PHE D 140 -1 O VAL D 134 N LEU D 124 SHEET 3 AA5 4 PHE D 169 SER D 178 -1 O ALA D 176 N CYS D 135 SHEET 4 AA5 4 VAL D 154 ILE D 156 -1 N TYR D 155 O TRP D 177 SHEET 1 AA6 4 ALA D 120 ARG D 125 0 SHEET 2 AA6 4 SER D 133 PHE D 140 -1 O VAL D 134 N LEU D 124 SHEET 3 AA6 4 PHE D 169 SER D 178 -1 O ALA D 176 N CYS D 135 SHEET 4 AA6 4 CYS D 160 MET D 164 -1 N LEU D 162 O SER D 171 SHEET 1 AA7 4 ILE E 3 SER E 6 0 SHEET 2 AA7 4 VAL E 18 GLN E 24 -1 O GLU E 23 N THR E 4 SHEET 3 AA7 4 LEU E 75 VAL E 77 -1 O LEU E 75 N LEU E 20 SHEET 4 AA7 4 TYR E 63 VAL E 65 -1 N SER E 64 O THR E 76 SHEET 1 AA8 6 TYR E 9 LYS E 13 0 SHEET 2 AA8 6 THR E 106 THR E 111 1 O ARG E 107 N LEU E 10 SHEET 3 AA8 6 ALA E 86 SER E 93 -1 N TYR E 88 O THR E 106 SHEET 4 AA8 6 ALA E 30 GLN E 36 -1 N TYR E 34 O LEU E 89 SHEET 5 AA8 6 LEU E 42 SER E 48 -1 O ILE E 45 N TRP E 33 SHEET 6 AA8 6 GLN E 55 LYS E 56 -1 O GLN E 55 N TYR E 47 SHEET 1 AA9 4 TYR E 9 LYS E 13 0 SHEET 2 AA9 4 THR E 106 THR E 111 1 O ARG E 107 N LEU E 10 SHEET 3 AA9 4 ALA E 86 SER E 93 -1 N TYR E 88 O THR E 106 SHEET 4 AA9 4 TYR E 101 PHE E 102 -1 O TYR E 101 N SER E 92 SHEET 1 AB1 4 GLU E 121 PHE E 125 0 SHEET 2 AB1 4 LYS E 137 PHE E 147 -1 O VAL E 141 N PHE E 125 SHEET 3 AB1 4 TYR E 185 SER E 194 -1 O LEU E 191 N LEU E 140 SHEET 4 AB1 4 VAL E 167 THR E 169 -1 N CYS E 168 O ARG E 190 SHEET 1 AB2 4 GLU E 121 PHE E 125 0 SHEET 2 AB2 4 LYS E 137 PHE E 147 -1 O VAL E 141 N PHE E 125 SHEET 3 AB2 4 TYR E 185 SER E 194 -1 O LEU E 191 N LEU E 140 SHEET 4 AB2 4 LEU E 174 LYS E 175 -1 N LEU E 174 O ALA E 186 SHEET 1 AB3 4 LYS E 161 VAL E 163 0 SHEET 2 AB3 4 VAL E 152 VAL E 158 -1 N VAL E 158 O LYS E 161 SHEET 3 AB3 4 HIS E 204 PHE E 211 -1 O GLN E 210 N GLU E 153 SHEET 4 AB3 4 GLN E 230 TRP E 237 -1 O ALA E 236 N PHE E 205 SHEET 1 AB4 8 GLU A 46 PRO A 47 0 SHEET 2 AB4 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AB4 8 ARG A 21 VAL A 28 -1 N VAL A 28 O THR A 31 SHEET 4 AB4 8 HIS A 3 VAL A 12 -1 N ARG A 6 O TYR A 27 SHEET 5 AB4 8 THR A 94 VAL A 103 -1 O VAL A 95 N SER A 11 SHEET 6 AB4 8 PHE A 109 TYR A 118 -1 O ARG A 111 N ASP A 102 SHEET 7 AB4 8 LYS A 121 LEU A 126 -1 O TYR A 123 N TYR A 116 SHEET 8 AB4 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AB5 4 LYS A 186 ALA A 193 0 SHEET 2 AB5 4 GLU A 198 PHE A 208 -1 O LEU A 206 N LYS A 186 SHEET 3 AB5 4 PHE A 241 PRO A 250 -1 O VAL A 249 N ALA A 199 SHEET 4 AB5 4 THR A 228 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 AB6 4 LYS A 186 ALA A 193 0 SHEET 2 AB6 4 GLU A 198 PHE A 208 -1 O LEU A 206 N LYS A 186 SHEET 3 AB6 4 PHE A 241 PRO A 250 -1 O VAL A 249 N ALA A 199 SHEET 4 AB6 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AB7 4 GLU A 222 ASP A 223 0 SHEET 2 AB7 4 ILE A 213 ARG A 219 -1 N ARG A 219 O GLU A 222 SHEET 3 AB7 4 TYR A 257 HIS A 263 -1 O THR A 258 N GLN A 218 SHEET 4 AB7 4 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 AB8 4 VAL B 10 SER B 12 0 SHEET 2 AB8 4 ASN B 22 PHE B 31 -1 O ASN B 25 N TYR B 11 SHEET 3 AB8 4 PHE B 63 PHE B 71 -1 O PHE B 71 N ASN B 22 SHEET 4 AB8 4 GLU B 51 HIS B 52 -1 N GLU B 51 O TYR B 68 SHEET 1 AB9 4 VAL B 10 SER B 12 0 SHEET 2 AB9 4 ASN B 22 PHE B 31 -1 O ASN B 25 N TYR B 11 SHEET 3 AB9 4 PHE B 63 PHE B 71 -1 O PHE B 71 N ASN B 22 SHEET 4 AB9 4 SER B 56 PHE B 57 -1 N SER B 56 O TYR B 64 SHEET 1 AC1 4 GLU B 45 ARG B 46 0 SHEET 2 AC1 4 GLU B 37 LYS B 42 -1 N LYS B 42 O GLU B 45 SHEET 3 AC1 4 TYR B 79 ASN B 84 -1 O ASN B 84 N GLU B 37 SHEET 4 AC1 4 LYS B 92 LYS B 95 -1 O VAL B 94 N CYS B 81 SSBOND 1 CYS D 24 CYS D 90 1555 1555 2.03 SSBOND 2 CYS D 135 CYS D 185 1555 1555 2.03 SSBOND 3 CYS D 160 CYS E 168 1555 1555 2.03 SSBOND 4 CYS E 22 CYS E 90 1555 1555 2.03 SSBOND 5 CYS E 142 CYS E 207 1555 1555 2.03 SSBOND 6 CYS A 101 CYS A 164 1555 1555 2.03 SSBOND 7 CYS A 203 CYS A 259 1555 1555 2.03 SSBOND 8 CYS B 26 CYS B 81 1555 1555 2.03 CISPEP 1 SER E 6 PRO E 7 0 -2.94 CISPEP 2 TYR E 148 PRO E 149 0 0.15 CISPEP 3 TYR A 209 PRO A 210 0 0.50 CISPEP 4 HIS B 32 PRO B 33 0 1.52 SITE 1 AC1 3 GLU A 166 ARG A 170 ASP D 28 CRYST1 129.532 129.532 115.656 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007720 0.004457 0.000000 0.00000 SCALE2 0.000000 0.008914 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008646 0.00000