HEADER METAL BINDING PROTEIN 29-JAN-20 6VO2 TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS KETOL-ACID REDUCTOISOMERASE TITLE 2 IN COMPLEX WITH MG, NADPH AND INHIBITOR. COMPND MOL_ID: 1; COMPND 2 MOLECULE: KETOL-ACID REDUCTOISOMERASE (NADP(+)); COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: KARI,ACETOHYDROXY-ACID ISOMEROREDUCTASE,AHIR,ALPHA-KETO- COMPND 5 BETA-HYDROXYLACYL REDUCTOISOMERASE; COMPND 6 EC: 1.1.1.86; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: ILVC, DB727_12700, E4U00_11130, ERS072840_02559, SOURCE 5 NCTC6133_02793, NCTC7878_02786, NCTC7988_02129; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS REDUCTOISOMERASE, INHIBITOR, COMPLEX, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.BAYARAA,K.M.PATEL,L.W.GUDDAT REVDAT 4 11-OCT-23 6VO2 1 REMARK REVDAT 3 05-AUG-20 6VO2 1 JRNL LINK REVDAT 2 08-JUL-20 6VO2 1 JRNL REVDAT 1 08-APR-20 6VO2 0 JRNL AUTH T.BAYARAA,J.L.KURZ,K.M.PATEL,W.M.HUSSEIN,J.K.BILYJ,N.P.WEST, JRNL AUTH 2 G.SCHENK,R.P.MCGEARY,L.W.GUDDAT JRNL TITL DISCOVERY, SYNTHESIS AND EVALUATION OF A KETOL-ACID JRNL TITL 2 REDUCTOISOMERASE INHIBITOR. JRNL REF CHEMISTRY V. 26 8958 2020 JRNL REFN ISSN 0947-6539 JRNL PMID 32198779 JRNL DOI 10.1002/CHEM.202000899 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 80.1 REMARK 3 NUMBER OF REFLECTIONS : 73102 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.710 REMARK 3 FREE R VALUE TEST SET COUNT : 1983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.1640 - 3.8321 1.00 6472 184 0.1277 0.1564 REMARK 3 2 3.8321 - 3.0419 1.00 6353 175 0.1407 0.1824 REMARK 3 3 3.0419 - 2.6574 1.00 6377 179 0.1638 0.2047 REMARK 3 4 2.6574 - 2.4145 1.00 6364 183 0.1696 0.2038 REMARK 3 5 2.4145 - 2.2414 1.00 6319 175 0.1662 0.2142 REMARK 3 6 2.2414 - 2.1093 1.00 6310 179 0.1729 0.2242 REMARK 3 7 2.1093 - 2.0036 1.00 6330 193 0.1919 0.2314 REMARK 3 8 2.0036 - 1.9164 1.00 6334 165 0.1979 0.2173 REMARK 3 9 1.9164 - 1.8426 1.00 6312 171 0.2134 0.2385 REMARK 3 10 1.8426 - 1.7790 1.00 6329 171 0.2181 0.2459 REMARK 3 11 1.7790 - 1.7234 1.00 6331 177 0.2288 0.2578 REMARK 3 12 1.7234 - 1.6741 0.20 1243 31 0.2404 0.2634 REMARK 3 13 1.6741 - 1.6301 0.00 24 0 0.2288 0.0000 REMARK 3 14 1.6301 - 1.5903 0.00 21 0 0.2343 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VO2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246715. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73135 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 47.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 80.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 0.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.20 REMARK 200 R MERGE FOR SHELL (I) : 0.41700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5W3K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM ACETATE PH 8.1 22.5% PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.41250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -143.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 328 REMARK 465 SER A 329 REMARK 465 LYS A 330 REMARK 465 SER A 331 REMARK 465 ILE A 332 REMARK 465 GLU A 333 REMARK 465 LYS A 334 REMARK 465 MET B 1 REMARK 465 LYS B 328 REMARK 465 SER B 329 REMARK 465 LYS B 330 REMARK 465 SER B 331 REMARK 465 ILE B 332 REMARK 465 GLU B 333 REMARK 465 LYS B 334 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 767 O HOH B 764 2.03 REMARK 500 NE2 GLN A 207 O HOH A 501 2.08 REMARK 500 OG SER A 27 O HOH A 502 2.10 REMARK 500 OE2 GLU A 300 O HOH A 503 2.10 REMARK 500 O HOH A 856 O HOH B 842 2.12 REMARK 500 O HOH A 505 O HOH A 536 2.12 REMARK 500 NE2 GLN B 308 O HOH B 501 2.13 REMARK 500 O HOH B 761 O HOH B 778 2.14 REMARK 500 OD1 ASN B 296 O HOH B 502 2.15 REMARK 500 O HOH A 745 O HOH A 864 2.15 REMARK 500 O HOH B 751 O HOH B 768 2.16 REMARK 500 OE1 GLU B 300 O HOH B 503 2.16 REMARK 500 O HOH A 549 O HOH A 807 2.16 REMARK 500 O HOH B 831 O HOH B 844 2.17 REMARK 500 O HOH B 655 O HOH B 765 2.18 REMARK 500 OE1 GLU A 300 O HOH A 504 2.18 REMARK 500 O HOH A 506 O HOH A 564 2.18 REMARK 500 O HOH B 512 O HOH B 635 2.18 REMARK 500 O HOH A 852 O HOH B 751 2.19 REMARK 500 OG SER B 27 O HOH B 504 2.19 REMARK 500 OE2 GLU B 272 O HOH B 505 2.19 REMARK 500 O HOH B 744 O HOH B 796 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 509 O HOH A 775 2545 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 198 CA - CB - CG ANGL. DEV. = -16.7 DEGREES REMARK 500 LEU B 198 CA - CB - CG ANGL. DEV. = -16.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 25 52.76 -142.11 REMARK 500 SER A 144 -149.11 -103.23 REMARK 500 VAL A 197 -61.08 -126.12 REMARK 500 TYR B 25 55.51 -142.70 REMARK 500 SER B 144 -152.42 -103.66 REMARK 500 VAL B 197 -64.93 -131.09 REMARK 500 ASN B 296 33.99 -91.41 REMARK 500 ASN B 296 38.82 -94.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 310 HIS B 311 148.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 865 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 866 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH A 867 DISTANCE = 7.69 ANGSTROMS REMARK 525 HOH B 846 DISTANCE = 6.06 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 190 OD2 REMARK 620 2 GLU A 194 OE2 88.3 REMARK 620 3 HOH A 568 O 95.2 91.4 REMARK 620 4 HOH A 673 O 86.2 174.5 88.5 REMARK 620 5 R67 B 403 O07 173.7 94.9 90.1 90.7 REMARK 620 6 R67 B 403 O09 95.8 86.1 168.6 95.1 79.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 190 OD1 REMARK 620 2 HOH A 589 O 82.5 REMARK 620 3 HOH A 657 O 88.5 171.0 REMARK 620 4 R67 B 403 O09 100.1 92.4 88.7 REMARK 620 5 R67 B 403 O10 172.5 93.7 95.3 86.5 REMARK 620 6 HOH B 542 O 89.8 89.6 90.9 170.1 83.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 R67 A 403 O09 REMARK 620 2 R67 A 403 O10 87.5 REMARK 620 3 HOH A 539 O 173.3 85.9 REMARK 620 4 HOH A 664 O 90.7 94.6 88.4 REMARK 620 5 ASP B 190 OD1 98.9 172.5 87.7 89.1 REMARK 620 6 HOH B 587 O 92.8 92.6 89.0 172.1 83.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 R67 A 403 O08 REMARK 620 2 R67 A 403 O09 81.1 REMARK 620 3 ASP B 190 OD2 176.1 96.7 REMARK 620 4 GLU B 194 OE2 93.6 87.1 89.5 REMARK 620 5 HOH B 551 O 88.8 168.5 93.7 88.2 REMARK 620 6 HOH B 628 O 91.0 94.6 86.0 175.3 90.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue R67 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue R67 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP B 404 DBREF1 6VO2 A 1 334 UNP A0A145BYP4_STAAU DBREF2 6VO2 A A0A145BYP4 1 334 DBREF1 6VO2 B 1 334 UNP A0A145BYP4_STAAU DBREF2 6VO2 B A0A145BYP4 1 334 SEQRES 1 A 334 MET THR THR VAL TYR TYR ASP GLN ASP VAL LYS THR ASP SEQRES 2 A 334 ALA LEU GLN GLY LYS LYS ILE ALA VAL VAL GLY TYR GLY SEQRES 3 A 334 SER GLN GLY HIS ALA HIS ALA GLN ASN LEU LYS ASP ASN SEQRES 4 A 334 GLY TYR ASP VAL VAL ILE GLY ILE ARG PRO GLY ARG SER SEQRES 5 A 334 PHE ASP LYS ALA LYS GLU ASP GLY PHE ASP VAL PHE PRO SEQRES 6 A 334 VAL ALA GLU ALA VAL LYS GLN ALA ASP VAL ILE MET VAL SEQRES 7 A 334 LEU LEU PRO ASP GLU ILE GLN GLY ASP VAL TYR LYS ASN SEQRES 8 A 334 GLU ILE GLU PRO ASN LEU GLU LYS HIS ASN ALA LEU ALA SEQRES 9 A 334 PHE ALA HIS GLY PHE ASN ILE HIS PHE GLY VAL ILE GLN SEQRES 10 A 334 PRO PRO ALA ASP VAL ASP VAL PHE LEU VAL ALA PRO LYS SEQRES 11 A 334 GLY PRO GLY HIS LEU VAL ARG ARG THR PHE VAL GLU GLY SEQRES 12 A 334 SER ALA VAL PRO SER LEU PHE GLY ILE GLN GLN ASP ALA SEQRES 13 A 334 SER GLY GLN ALA ARG ASN ILE ALA LEU SER TYR ALA LYS SEQRES 14 A 334 GLY ILE GLY ALA THR ARG ALA GLY VAL ILE GLU THR THR SEQRES 15 A 334 PHE LYS GLU GLU THR GLU THR ASP LEU PHE GLY GLU GLN SEQRES 16 A 334 ALA VAL LEU CYS GLY GLY VAL SER LYS LEU ILE GLN SER SEQRES 17 A 334 GLY PHE GLU THR LEU VAL GLU ALA GLY TYR GLN PRO GLU SEQRES 18 A 334 LEU ALA TYR PHE GLU VAL LEU HIS GLU MET LYS LEU ILE SEQRES 19 A 334 VAL ASP LEU MET TYR GLU GLY GLY MET GLU ASN VAL ARG SEQRES 20 A 334 TYR SER ILE SER ASN THR ALA GLU PHE GLY ASP TYR VAL SEQRES 21 A 334 SER GLY PRO ARG VAL ILE THR PRO ASP VAL LYS GLU ASN SEQRES 22 A 334 MET LYS ALA VAL LEU THR ASP ILE GLN ASN GLY ASN PHE SEQRES 23 A 334 SER ASN ARG PHE ILE GLU ASP ASN LYS ASN GLY PHE LYS SEQRES 24 A 334 GLU PHE TYR LYS LEU ARG GLU GLU GLN HIS GLY HIS GLN SEQRES 25 A 334 ILE GLU LYS VAL GLY ARG GLU LEU ARG GLU MET MET PRO SEQRES 26 A 334 PHE ILE LYS SER LYS SER ILE GLU LYS SEQRES 1 B 334 MET THR THR VAL TYR TYR ASP GLN ASP VAL LYS THR ASP SEQRES 2 B 334 ALA LEU GLN GLY LYS LYS ILE ALA VAL VAL GLY TYR GLY SEQRES 3 B 334 SER GLN GLY HIS ALA HIS ALA GLN ASN LEU LYS ASP ASN SEQRES 4 B 334 GLY TYR ASP VAL VAL ILE GLY ILE ARG PRO GLY ARG SER SEQRES 5 B 334 PHE ASP LYS ALA LYS GLU ASP GLY PHE ASP VAL PHE PRO SEQRES 6 B 334 VAL ALA GLU ALA VAL LYS GLN ALA ASP VAL ILE MET VAL SEQRES 7 B 334 LEU LEU PRO ASP GLU ILE GLN GLY ASP VAL TYR LYS ASN SEQRES 8 B 334 GLU ILE GLU PRO ASN LEU GLU LYS HIS ASN ALA LEU ALA SEQRES 9 B 334 PHE ALA HIS GLY PHE ASN ILE HIS PHE GLY VAL ILE GLN SEQRES 10 B 334 PRO PRO ALA ASP VAL ASP VAL PHE LEU VAL ALA PRO LYS SEQRES 11 B 334 GLY PRO GLY HIS LEU VAL ARG ARG THR PHE VAL GLU GLY SEQRES 12 B 334 SER ALA VAL PRO SER LEU PHE GLY ILE GLN GLN ASP ALA SEQRES 13 B 334 SER GLY GLN ALA ARG ASN ILE ALA LEU SER TYR ALA LYS SEQRES 14 B 334 GLY ILE GLY ALA THR ARG ALA GLY VAL ILE GLU THR THR SEQRES 15 B 334 PHE LYS GLU GLU THR GLU THR ASP LEU PHE GLY GLU GLN SEQRES 16 B 334 ALA VAL LEU CYS GLY GLY VAL SER LYS LEU ILE GLN SER SEQRES 17 B 334 GLY PHE GLU THR LEU VAL GLU ALA GLY TYR GLN PRO GLU SEQRES 18 B 334 LEU ALA TYR PHE GLU VAL LEU HIS GLU MET LYS LEU ILE SEQRES 19 B 334 VAL ASP LEU MET TYR GLU GLY GLY MET GLU ASN VAL ARG SEQRES 20 B 334 TYR SER ILE SER ASN THR ALA GLU PHE GLY ASP TYR VAL SEQRES 21 B 334 SER GLY PRO ARG VAL ILE THR PRO ASP VAL LYS GLU ASN SEQRES 22 B 334 MET LYS ALA VAL LEU THR ASP ILE GLN ASN GLY ASN PHE SEQRES 23 B 334 SER ASN ARG PHE ILE GLU ASP ASN LYS ASN GLY PHE LYS SEQRES 24 B 334 GLU PHE TYR LYS LEU ARG GLU GLU GLN HIS GLY HIS GLN SEQRES 25 B 334 ILE GLU LYS VAL GLY ARG GLU LEU ARG GLU MET MET PRO SEQRES 26 B 334 PHE ILE LYS SER LYS SER ILE GLU LYS HET MG A 401 1 HET MG A 402 1 HET R67 A 403 10 HET NDP A 404 48 HET MG B 401 1 HET MG B 402 1 HET R67 B 403 10 HET NDP B 404 48 HETNAM MG MAGNESIUM ION HETNAM R67 3-(METHYLSULFONYL)-2-OXOPROPANOIC ACID HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE FORMUL 3 MG 4(MG 2+) FORMUL 5 R67 2(C4 H6 O5 S) FORMUL 6 NDP 2(C21 H30 N7 O17 P3) FORMUL 11 HOH *713(H2 O) HELIX 1 AA1 TYR A 6 VAL A 10 5 5 HELIX 2 AA2 GLY A 26 ASN A 39 1 14 HELIX 3 AA3 GLY A 50 ASP A 59 1 10 HELIX 4 AA4 PRO A 65 ALA A 73 1 9 HELIX 5 AA5 PRO A 81 ILE A 93 1 13 HELIX 6 AA6 GLU A 94 LEU A 97 5 4 HELIX 7 AA7 GLY A 108 PHE A 113 1 6 HELIX 8 AA8 PRO A 132 GLY A 143 1 12 HELIX 9 AA9 GLN A 159 ILE A 171 1 13 HELIX 10 AB1 GLY A 172 ALA A 176 5 5 HELIX 11 AB2 THR A 182 VAL A 197 1 16 HELIX 12 AB3 CYS A 199 ALA A 216 1 18 HELIX 13 AB4 GLN A 219 LEU A 228 1 10 HELIX 14 AB5 LEU A 228 ILE A 250 1 23 HELIX 15 AB6 SER A 251 ILE A 266 1 16 HELIX 16 AB7 THR A 267 ASN A 283 1 17 HELIX 17 AB8 GLY A 284 ASN A 296 1 13 HELIX 18 AB9 PHE A 298 HIS A 309 1 12 HELIX 19 AC1 HIS A 311 MET A 323 1 13 HELIX 20 AC2 TYR B 6 VAL B 10 5 5 HELIX 21 AC3 GLY B 26 ASN B 39 1 14 HELIX 22 AC4 GLY B 50 ASP B 59 1 10 HELIX 23 AC5 PRO B 65 ALA B 73 1 9 HELIX 24 AC6 PRO B 81 ILE B 93 1 13 HELIX 25 AC7 GLU B 94 LEU B 97 5 4 HELIX 26 AC8 GLY B 108 PHE B 113 1 6 HELIX 27 AC9 PRO B 132 GLY B 143 1 12 HELIX 28 AD1 GLN B 159 ILE B 171 1 13 HELIX 29 AD2 GLY B 172 ALA B 176 5 5 HELIX 30 AD3 THR B 182 VAL B 197 1 16 HELIX 31 AD4 CYS B 199 ALA B 216 1 18 HELIX 32 AD5 GLN B 219 LEU B 228 1 10 HELIX 33 AD6 LEU B 228 ILE B 250 1 23 HELIX 34 AD7 SER B 251 ILE B 266 1 16 HELIX 35 AD8 THR B 267 ASN B 283 1 17 HELIX 36 AD9 GLY B 284 ASN B 296 1 13 HELIX 37 AE1 PHE B 298 HIS B 309 1 12 HELIX 38 AE2 HIS B 311 MET B 323 1 13 SHEET 1 AA1 9 VAL A 4 TYR A 5 0 SHEET 2 AA1 9 VAL A 178 GLU A 180 -1 O VAL A 178 N TYR A 5 SHEET 3 AA1 9 SER A 148 GLN A 154 1 N PHE A 150 O ILE A 179 SHEET 4 AA1 9 ASP A 123 PRO A 129 -1 N VAL A 124 O GLN A 153 SHEET 5 AA1 9 ALA A 102 PHE A 105 1 N LEU A 103 O ASP A 123 SHEET 6 AA1 9 VAL A 75 VAL A 78 1 N ILE A 76 O ALA A 104 SHEET 7 AA1 9 LYS A 19 VAL A 23 1 N VAL A 23 O MET A 77 SHEET 8 AA1 9 ASP A 42 GLY A 46 1 O ASP A 42 N ILE A 20 SHEET 9 AA1 9 ASP A 62 PHE A 64 1 O PHE A 64 N ILE A 45 SHEET 1 AA2 9 VAL B 4 TYR B 5 0 SHEET 2 AA2 9 VAL B 178 GLU B 180 -1 O VAL B 178 N TYR B 5 SHEET 3 AA2 9 SER B 148 GLN B 154 1 N PHE B 150 O ILE B 179 SHEET 4 AA2 9 ASP B 123 PRO B 129 -1 N ALA B 128 O LEU B 149 SHEET 5 AA2 9 ALA B 102 PHE B 105 1 N LEU B 103 O ASP B 123 SHEET 6 AA2 9 VAL B 75 VAL B 78 1 N ILE B 76 O ALA B 104 SHEET 7 AA2 9 LYS B 19 VAL B 23 1 N ALA B 21 O VAL B 75 SHEET 8 AA2 9 ASP B 42 GLY B 46 1 O ASP B 42 N ILE B 20 SHEET 9 AA2 9 VAL B 63 PHE B 64 1 O PHE B 64 N ILE B 45 LINK OD2 ASP A 190 MG MG A 401 1555 1555 2.06 LINK OD1 ASP A 190 MG MG A 402 1555 1555 1.96 LINK OE2 GLU A 194 MG MG A 401 1555 1555 2.17 LINK MG MG A 401 O HOH A 568 1555 1555 2.08 LINK MG MG A 401 O HOH A 673 1555 1555 2.11 LINK MG MG A 401 O07 R67 B 403 1555 1555 2.05 LINK MG MG A 401 O09 R67 B 403 1555 1555 2.22 LINK MG MG A 402 O HOH A 589 1555 1555 2.14 LINK MG MG A 402 O HOH A 657 1555 1555 2.08 LINK MG MG A 402 O09 R67 B 403 1555 1555 2.05 LINK MG MG A 402 O10 R67 B 403 1555 1555 2.12 LINK MG MG A 402 O HOH B 542 1555 1555 2.01 LINK O09 R67 A 403 MG MG B 401 1555 1555 2.02 LINK O10 R67 A 403 MG MG B 401 1555 1555 2.06 LINK O08 R67 A 403 MG MG B 402 1555 1555 2.11 LINK O09 R67 A 403 MG MG B 402 1555 1555 2.16 LINK O HOH A 539 MG MG B 401 1555 1555 2.08 LINK O HOH A 664 MG MG B 401 1555 1555 2.13 LINK OD1 ASP B 190 MG MG B 401 1555 1555 1.98 LINK OD2 ASP B 190 MG MG B 402 1555 1555 2.02 LINK OE2 GLU B 194 MG MG B 402 1555 1555 2.17 LINK MG MG B 401 O HOH B 587 1555 1555 2.15 LINK MG MG B 402 O HOH B 551 1555 1555 2.11 LINK MG MG B 402 O HOH B 628 1555 1555 2.06 SITE 1 AC1 6 ASP A 190 GLU A 194 MG A 402 HOH A 568 SITE 2 AC1 6 HOH A 673 R67 B 403 SITE 1 AC2 6 ASP A 190 MG A 401 HOH A 589 HOH A 657 SITE 2 AC2 6 R67 B 403 HOH B 542 SITE 1 AC3 17 GLU A 230 ILE A 234 ILE A 250 SER A 251 SITE 2 AC3 17 ALA A 254 HOH A 539 HOH A 664 GLY B 131 SITE 3 AC3 17 PRO B 132 ASP B 190 GLU B 194 MG B 401 SITE 4 AC3 17 MG B 402 NDP B 404 HOH B 551 HOH B 587 SITE 5 AC3 17 HOH B 628 SITE 1 AC4 36 TYR A 25 GLY A 26 SER A 27 GLN A 28 SITE 2 AC4 36 ILE A 47 ARG A 48 SER A 52 LEU A 79 SITE 3 AC4 36 LEU A 80 PRO A 81 ASP A 82 GLN A 85 SITE 4 AC4 36 VAL A 88 ALA A 106 HIS A 107 GLY A 131 SITE 5 AC4 36 PRO A 132 GLY A 133 HOH A 525 HOH A 555 SITE 6 AC4 36 HOH A 589 HOH A 592 HOH A 609 HOH A 614 SITE 7 AC4 36 HOH A 630 HOH A 633 HOH A 649 HOH A 661 SITE 8 AC4 36 HOH A 673 HOH A 694 HOH A 770 SER B 249 SITE 9 AC4 36 ILE B 250 SER B 251 R67 B 403 HOH B 595 SITE 1 AC5 6 R67 A 403 HOH A 539 HOH A 664 ASP B 190 SITE 2 AC5 6 MG B 402 HOH B 587 SITE 1 AC6 6 R67 A 403 ASP B 190 GLU B 194 MG B 401 SITE 2 AC6 6 HOH B 551 HOH B 628 SITE 1 AC7 16 GLY A 131 PRO A 132 ASP A 190 GLU A 194 SITE 2 AC7 16 MG A 401 MG A 402 NDP A 404 HOH A 568 SITE 3 AC7 16 HOH A 589 HOH A 657 HOH A 673 GLU B 230 SITE 4 AC7 16 ILE B 250 SER B 251 ALA B 254 HOH B 542 SITE 1 AC8 39 SER A 249 ILE A 250 SER A 251 R67 A 403 SITE 2 AC8 39 TYR B 25 GLY B 26 SER B 27 GLN B 28 SITE 3 AC8 39 ILE B 47 ARG B 48 SER B 52 LEU B 79 SITE 4 AC8 39 LEU B 80 PRO B 81 ASP B 82 GLN B 85 SITE 5 AC8 39 VAL B 88 ALA B 106 HIS B 107 PRO B 132 SITE 6 AC8 39 GLY B 133 HOH B 520 HOH B 524 HOH B 525 SITE 7 AC8 39 HOH B 528 HOH B 549 HOH B 552 HOH B 555 SITE 8 AC8 39 HOH B 567 HOH B 575 HOH B 587 HOH B 614 SITE 9 AC8 39 HOH B 628 HOH B 629 HOH B 646 HOH B 655 SITE 10 AC8 39 HOH B 660 HOH B 692 HOH B 714 CRYST1 64.039 80.825 66.803 90.00 92.61 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015615 0.000000 0.000712 0.00000 SCALE2 0.000000 0.012372 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014985 0.00000