HEADER OXIDOREDUCTASE 30-JAN-20 6VO8 TITLE X-RAY STRUCTURE OF THE CJ1427 IN THE PRESENCE OF NADH AND GDP-D- TITLE 2 GLYCERO-D-MANNOHEPTOSE, AN ESSENTIAL NAD-DEPENDENT DEHYDROGENASE FROM TITLE 3 CAMPYLOBACTER JEJUNI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SUGAR-NUCLEOTIDE EPIMERASE/DEHYDRATEASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.1.3.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI SUBSP. JEJUNI SEROTYPE O:2 SOURCE 3 (STRAIN ATCC 700819 / NCTC 11168); SOURCE 4 ORGANISM_TAXID: 192222; SOURCE 5 STRAIN: ATCC 700819 / NCTC 11168; SOURCE 6 GENE: CJ1427C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VARIANT: ROSETTA2 KEYWDS CAPSULAR POLYSACCHARIDE, OXIDOREDUCTASE, DEHYDROGENASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.D.SPENCER,T.K.ANDERSON,J.B.THODEN,J.P.HUDDLESTON,F.M.RAUSHEL, AUTHOR 2 H.M.HOLDEN REVDAT 3 11-OCT-23 6VO8 1 REMARK REVDAT 2 22-APR-20 6VO8 1 JRNL REVDAT 1 25-MAR-20 6VO8 0 JRNL AUTH J.P.HUDDLESTON,T.K.ANDERSON,K.D.SPENCER,J.B.THODEN, JRNL AUTH 2 F.M.RAUSHEL,H.M.HOLDEN JRNL TITL STRUCTURAL ANALYSIS OF CJ1427, AN ESSENTIAL NAD-DEPENDENT JRNL TITL 2 DEHYDROGENASE FOR THE BIOSYNTHESIS OF THE HEPTOSE RESIDUES JRNL TITL 3 IN THE CAPSULAR POLYSACCHARIDES OFCAMPYLOBACTER JEJUNI. JRNL REF BIOCHEMISTRY V. 59 1314 2020 JRNL REFN ISSN 0006-2960 JRNL PMID 32168450 JRNL DOI 10.1021/ACS.BIOCHEM.0C00096 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 26677 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1590 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1893 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.3370 REMARK 3 BIN FREE R VALUE SET COUNT : 118 REMARK 3 BIN FREE R VALUE : 0.3720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4801 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 170 REMARK 3 SOLVENT ATOMS : 194 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.469 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.309 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.258 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.675 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.830 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5082 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4724 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6888 ; 1.801 ; 1.698 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10979 ; 1.232 ; 1.605 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 599 ; 8.493 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 252 ;35.280 ;22.619 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 893 ;17.820 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;17.061 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 678 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5497 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1059 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6VO8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246731. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER D8 QUEST REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28260 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09600 REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.35100 REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6VO6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8-10% PEG-8000, 2%-TERTBUTYL ALCOHOL, REMARK 280 100 MM HOMOPIPES, IN THE PRESENCE OF 2.5 MM GDP-D-GLYCERO-D- REMARK 280 MANNOHEPTOSE, PH 5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 49.36150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.42600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.36150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.42600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 98.85200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 305 REMARK 465 VAL A 306 REMARK 465 ASN A 307 REMARK 465 ARG A 308 REMARK 465 PHE A 309 REMARK 465 ALA A 310 REMARK 465 ASN A 311 REMARK 465 PHE A 312 REMARK 465 ASN A 313 REMARK 465 LEU A 314 REMARK 465 GLU A 315 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 465 HIS A 319 REMARK 465 HIS A 320 REMARK 465 HIS A 321 REMARK 465 MET B 1 REMARK 465 GLU B 127 REMARK 465 LYS B 128 REMARK 465 ASP B 129 REMARK 465 ALA B 130 REMARK 465 LYS B 305 REMARK 465 VAL B 306 REMARK 465 ASN B 307 REMARK 465 ARG B 308 REMARK 465 PHE B 309 REMARK 465 ALA B 310 REMARK 465 ASN B 311 REMARK 465 PHE B 312 REMARK 465 ASN B 313 REMARK 465 LEU B 314 REMARK 465 GLU B 315 REMARK 465 HIS B 316 REMARK 465 HIS B 317 REMARK 465 HIS B 318 REMARK 465 HIS B 319 REMARK 465 HIS B 320 REMARK 465 HIS B 321 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 130 O HOH A 501 1.98 REMARK 500 O HOH A 529 O HOH A 599 2.13 REMARK 500 O MET B 304 O HOH B 501 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 39.36 39.95 REMARK 500 TYR A 98 -57.19 -124.58 REMARK 500 ASN A 160 57.60 -97.45 REMARK 500 LYS A 193 13.41 59.48 REMARK 500 SER A 236 -34.26 -37.68 REMARK 500 ALA A 238 54.04 -147.44 REMARK 500 LYS A 269 52.43 39.33 REMARK 500 ASP B 60 94.96 -53.57 REMARK 500 TYR B 98 -77.33 -107.22 REMARK 500 ARG B 139 68.34 -116.49 REMARK 500 ASN B 160 47.01 -89.70 REMARK 500 LEU B 181 -54.57 -24.59 REMARK 500 ALA B 238 42.98 -151.02 REMARK 500 GLU B 265 110.24 -162.83 REMARK 500 ASP B 271 73.46 -150.55 REMARK 500 TRP B 284 126.76 -35.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAI A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GZ0 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAI B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GZ0 B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6VO6 RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH GDP DBREF 6VO8 A 1 313 UNP Q0P8I7 Q0P8I7_CAMJE 1 313 DBREF 6VO8 B 1 313 UNP Q0P8I7 Q0P8I7_CAMJE 1 313 SEQADV 6VO8 LEU A 314 UNP Q0P8I7 EXPRESSION TAG SEQADV 6VO8 GLU A 315 UNP Q0P8I7 EXPRESSION TAG SEQADV 6VO8 HIS A 316 UNP Q0P8I7 EXPRESSION TAG SEQADV 6VO8 HIS A 317 UNP Q0P8I7 EXPRESSION TAG SEQADV 6VO8 HIS A 318 UNP Q0P8I7 EXPRESSION TAG SEQADV 6VO8 HIS A 319 UNP Q0P8I7 EXPRESSION TAG SEQADV 6VO8 HIS A 320 UNP Q0P8I7 EXPRESSION TAG SEQADV 6VO8 HIS A 321 UNP Q0P8I7 EXPRESSION TAG SEQADV 6VO8 LEU B 314 UNP Q0P8I7 EXPRESSION TAG SEQADV 6VO8 GLU B 315 UNP Q0P8I7 EXPRESSION TAG SEQADV 6VO8 HIS B 316 UNP Q0P8I7 EXPRESSION TAG SEQADV 6VO8 HIS B 317 UNP Q0P8I7 EXPRESSION TAG SEQADV 6VO8 HIS B 318 UNP Q0P8I7 EXPRESSION TAG SEQADV 6VO8 HIS B 319 UNP Q0P8I7 EXPRESSION TAG SEQADV 6VO8 HIS B 320 UNP Q0P8I7 EXPRESSION TAG SEQADV 6VO8 HIS B 321 UNP Q0P8I7 EXPRESSION TAG SEQRES 1 A 321 MET SER LYS LYS VAL LEU ILE THR GLY GLY ALA GLY TYR SEQRES 2 A 321 ILE GLY SER VAL LEU THR PRO ILE LEU LEU GLU LYS GLY SEQRES 3 A 321 TYR GLU VAL CYS VAL ILE ASP ASN LEU MET PHE ASP GLN SEQRES 4 A 321 ILE SER LEU LEU SER CYS PHE HIS ASN LYS ASN PHE THR SEQRES 5 A 321 PHE ILE ASN GLY ASP ALA MET ASP GLU ASN LEU ILE ARG SEQRES 6 A 321 GLN GLU VAL ALA LYS ALA ASP ILE ILE ILE PRO LEU ALA SEQRES 7 A 321 ALA LEU VAL GLY ALA PRO LEU CYS LYS ARG ASN PRO LYS SEQRES 8 A 321 LEU ALA LYS MET ILE ASN TYR GLU ALA VAL LYS MET ILE SEQRES 9 A 321 SER ASP PHE ALA SER PRO SER GLN ILE PHE ILE TYR PRO SEQRES 10 A 321 ASN THR ASN SER GLY TYR GLY ILE GLY GLU LYS ASP ALA SEQRES 11 A 321 MET CYS THR GLU GLU SER PRO LEU ARG PRO ILE SER GLU SEQRES 12 A 321 TYR GLY ILE ASP LYS VAL HIS ALA GLU GLN TYR LEU LEU SEQRES 13 A 321 ASP LYS GLY ASN CYS VAL THR PHE ARG LEU ALA THR VAL SEQRES 14 A 321 PHE GLY ILE SER PRO ARG MET ARG LEU ASP LEU LEU VAL SEQRES 15 A 321 ASN ASP PHE THR TYR ARG ALA TYR ARG ASP LYS PHE ILE SEQRES 16 A 321 VAL LEU PHE GLU GLU HIS PHE ARG ARG ASN TYR ILE HIS SEQRES 17 A 321 VAL ARG ASP VAL VAL LYS GLY PHE ILE HIS GLY ILE GLU SEQRES 18 A 321 ASN TYR ASP LYS MET LYS GLY GLN ALA TYR ASN MET GLY SEQRES 19 A 321 LEU SER SER ALA ASN LEU THR LYS ARG GLN LEU ALA GLU SEQRES 20 A 321 THR ILE LYS LYS TYR ILE PRO ASP PHE TYR ILE HIS SER SEQRES 21 A 321 ALA ASN ILE GLY GLU ASP PRO ASP LYS ARG ASP TYR LEU SEQRES 22 A 321 VAL SER ASN THR LYS LEU GLU ALA THR GLY TRP LYS PRO SEQRES 23 A 321 ASP ASN THR LEU GLU ASP GLY ILE LYS GLU LEU LEU ARG SEQRES 24 A 321 ALA PHE LYS MET MET LYS VAL ASN ARG PHE ALA ASN PHE SEQRES 25 A 321 ASN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 321 MET SER LYS LYS VAL LEU ILE THR GLY GLY ALA GLY TYR SEQRES 2 B 321 ILE GLY SER VAL LEU THR PRO ILE LEU LEU GLU LYS GLY SEQRES 3 B 321 TYR GLU VAL CYS VAL ILE ASP ASN LEU MET PHE ASP GLN SEQRES 4 B 321 ILE SER LEU LEU SER CYS PHE HIS ASN LYS ASN PHE THR SEQRES 5 B 321 PHE ILE ASN GLY ASP ALA MET ASP GLU ASN LEU ILE ARG SEQRES 6 B 321 GLN GLU VAL ALA LYS ALA ASP ILE ILE ILE PRO LEU ALA SEQRES 7 B 321 ALA LEU VAL GLY ALA PRO LEU CYS LYS ARG ASN PRO LYS SEQRES 8 B 321 LEU ALA LYS MET ILE ASN TYR GLU ALA VAL LYS MET ILE SEQRES 9 B 321 SER ASP PHE ALA SER PRO SER GLN ILE PHE ILE TYR PRO SEQRES 10 B 321 ASN THR ASN SER GLY TYR GLY ILE GLY GLU LYS ASP ALA SEQRES 11 B 321 MET CYS THR GLU GLU SER PRO LEU ARG PRO ILE SER GLU SEQRES 12 B 321 TYR GLY ILE ASP LYS VAL HIS ALA GLU GLN TYR LEU LEU SEQRES 13 B 321 ASP LYS GLY ASN CYS VAL THR PHE ARG LEU ALA THR VAL SEQRES 14 B 321 PHE GLY ILE SER PRO ARG MET ARG LEU ASP LEU LEU VAL SEQRES 15 B 321 ASN ASP PHE THR TYR ARG ALA TYR ARG ASP LYS PHE ILE SEQRES 16 B 321 VAL LEU PHE GLU GLU HIS PHE ARG ARG ASN TYR ILE HIS SEQRES 17 B 321 VAL ARG ASP VAL VAL LYS GLY PHE ILE HIS GLY ILE GLU SEQRES 18 B 321 ASN TYR ASP LYS MET LYS GLY GLN ALA TYR ASN MET GLY SEQRES 19 B 321 LEU SER SER ALA ASN LEU THR LYS ARG GLN LEU ALA GLU SEQRES 20 B 321 THR ILE LYS LYS TYR ILE PRO ASP PHE TYR ILE HIS SER SEQRES 21 B 321 ALA ASN ILE GLY GLU ASP PRO ASP LYS ARG ASP TYR LEU SEQRES 22 B 321 VAL SER ASN THR LYS LEU GLU ALA THR GLY TRP LYS PRO SEQRES 23 B 321 ASP ASN THR LEU GLU ASP GLY ILE LYS GLU LEU LEU ARG SEQRES 24 B 321 ALA PHE LYS MET MET LYS VAL ASN ARG PHE ALA ASN PHE SEQRES 25 B 321 ASN LEU GLU HIS HIS HIS HIS HIS HIS HET NAI A 401 44 HET GZ0 A 402 41 HET NAI B 401 44 HET GZ0 B 402 41 HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETNAM GZ0 [[(2~{R},3~{S},4~{R},5~{R})-5-(2-AZANYL-6- HETNAM 2 GZ0 OXIDANYLIDENE-3~{H}-PURIN-9-YL)-3,4-BIS(OXIDANYL) HETNAM 3 GZ0 OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL] [(2~{R}, HETNAM 4 GZ0 3~{S},4~{S},5~{S},6~{S})-6-[(1~{S})-1,2-BIS(OXIDANYL) HETNAM 5 GZ0 ETHYL]-3,4,5-TRIS(OXIDANYL)OXAN-2-YL] HYDROGEN HETNAM 6 GZ0 PHOSPHATE HETSYN NAI NADH FORMUL 3 NAI 2(C21 H29 N7 O14 P2) FORMUL 4 GZ0 2(C17 H27 N5 O17 P2) FORMUL 7 HOH *194(H2 O) HELIX 1 AA1 ILE A 14 LYS A 25 1 12 HELIX 2 AA2 LEU A 42 PHE A 46 5 5 HELIX 3 AA3 ASP A 60 ALA A 69 1 10 HELIX 4 AA4 GLY A 82 ASN A 89 1 8 HELIX 5 AA5 ASN A 89 TYR A 98 1 10 HELIX 6 AA6 TYR A 98 ALA A 108 1 11 HELIX 7 AA7 SER A 142 ASP A 157 1 16 HELIX 8 AA8 LEU A 180 LYS A 193 1 14 HELIX 9 AA9 VAL A 209 ASN A 222 1 14 HELIX 10 AB1 ASN A 222 LYS A 227 1 6 HELIX 11 AB2 THR A 241 LYS A 251 1 11 HELIX 12 AB3 ASN A 276 THR A 282 1 7 HELIX 13 AB4 THR A 289 LYS A 302 1 14 HELIX 14 AB5 ILE B 14 LYS B 25 1 12 HELIX 15 AB6 LEU B 42 PHE B 46 5 5 HELIX 16 AB7 ASP B 60 ALA B 69 1 10 HELIX 17 AB8 GLY B 82 ARG B 88 1 7 HELIX 18 AB9 ASN B 89 TYR B 98 1 10 HELIX 19 AC1 TYR B 98 PHE B 107 1 10 HELIX 20 AC2 SER B 142 GLY B 159 1 18 HELIX 21 AC3 LEU B 180 LYS B 193 1 14 HELIX 22 AC4 VAL B 209 ASN B 222 1 14 HELIX 23 AC5 ASN B 222 LYS B 227 1 6 HELIX 24 AC6 LYS B 242 ILE B 253 1 12 HELIX 25 AC7 ASN B 276 ALA B 281 1 6 HELIX 26 AC8 THR B 289 LYS B 302 1 14 SHEET 1 AA1 7 PHE A 51 ASN A 55 0 SHEET 2 AA1 7 GLU A 28 ASP A 33 1 N VAL A 31 O ILE A 54 SHEET 3 AA1 7 LYS A 4 THR A 8 1 N VAL A 5 O CYS A 30 SHEET 4 AA1 7 ILE A 73 PRO A 76 1 O ILE A 73 N LEU A 6 SHEET 5 AA1 7 ILE A 113 THR A 119 1 O ILE A 113 N ILE A 74 SHEET 6 AA1 7 CYS A 161 LEU A 166 1 O PHE A 164 N ASN A 118 SHEET 7 AA1 7 ALA A 230 MET A 233 1 O MET A 233 N ARG A 165 SHEET 1 AA2 2 MET A 131 CYS A 132 0 SHEET 2 AA2 2 LEU A 273 VAL A 274 1 O LEU A 273 N CYS A 132 SHEET 1 AA3 2 THR A 168 PHE A 170 0 SHEET 2 AA3 2 TYR A 206 HIS A 208 1 O ILE A 207 N PHE A 170 SHEET 1 AA4 2 PHE A 194 LEU A 197 0 SHEET 2 AA4 2 TYR A 257 SER A 260 1 O HIS A 259 N ILE A 195 SHEET 1 AA5 7 PHE B 51 ASN B 55 0 SHEET 2 AA5 7 GLU B 28 ASP B 33 1 N VAL B 31 O THR B 52 SHEET 3 AA5 7 LYS B 4 THR B 8 1 N VAL B 5 O GLU B 28 SHEET 4 AA5 7 ILE B 73 PRO B 76 1 O ILE B 75 N LEU B 6 SHEET 5 AA5 7 ILE B 113 ASN B 118 1 O ILE B 115 N ILE B 74 SHEET 6 AA5 7 CYS B 161 LEU B 166 1 O PHE B 164 N ASN B 118 SHEET 7 AA5 7 ALA B 230 MET B 233 1 O MET B 233 N ARG B 165 SHEET 1 AA6 2 THR B 168 PHE B 170 0 SHEET 2 AA6 2 TYR B 206 HIS B 208 1 O ILE B 207 N PHE B 170 SHEET 1 AA7 2 PHE B 194 LEU B 197 0 SHEET 2 AA7 2 TYR B 257 SER B 260 1 O HIS B 259 N LEU B 197 SHEET 1 AA8 2 ARG B 203 ARG B 204 0 SHEET 2 AA8 2 LEU B 240 THR B 241 -1 O LEU B 240 N ARG B 204 SITE 1 AC1 31 GLY A 9 ALA A 11 GLY A 12 TYR A 13 SITE 2 AC1 31 ILE A 14 ASP A 33 ASN A 34 MET A 36 SITE 3 AC1 31 PHE A 37 GLN A 39 GLY A 56 ASP A 57 SITE 4 AC1 31 ALA A 58 LEU A 77 ALA A 78 ALA A 79 SITE 5 AC1 31 VAL A 81 PRO A 117 ASN A 118 TYR A 144 SITE 6 AC1 31 LYS A 148 LEU A 166 VAL A 169 ARG A 175 SITE 7 AC1 31 ARG A 177 LEU A 180 GZ0 A 402 HOH A 512 SITE 8 AC1 31 HOH A 516 HOH A 517 HOH A 580 SITE 1 AC2 25 VAL A 81 GLY A 82 PRO A 84 THR A 119 SITE 2 AC2 25 ASN A 120 SER A 121 TYR A 144 LEU A 166 SITE 3 AC2 25 THR A 168 ARG A 177 ASP A 179 LEU A 180 SITE 4 AC2 25 LEU A 181 ASP A 184 PHE A 185 VAL A 196 SITE 5 AC2 25 LEU A 197 PHE A 198 ARG A 204 LYS A 242 SITE 6 AC2 25 ARG A 270 TYR A 272 NAI A 401 HOH A 524 SITE 7 AC2 25 HOH A 544 SITE 1 AC3 34 GLY B 9 ALA B 11 GLY B 12 TYR B 13 SITE 2 AC3 34 ILE B 14 ASP B 33 ASN B 34 MET B 36 SITE 3 AC3 34 PHE B 37 GLN B 39 GLY B 56 ASP B 57 SITE 4 AC3 34 ALA B 58 LEU B 77 ALA B 78 ALA B 79 SITE 5 AC3 34 VAL B 81 ILE B 96 PRO B 117 ASN B 118 SITE 6 AC3 34 TYR B 144 LYS B 148 LEU B 166 ALA B 167 SITE 7 AC3 34 VAL B 169 ARG B 175 ARG B 177 LEU B 180 SITE 8 AC3 34 GZ0 B 402 HOH B 509 HOH B 516 HOH B 536 SITE 9 AC3 34 HOH B 542 HOH B 545 SITE 1 AC4 26 VAL B 81 GLY B 82 PRO B 84 THR B 119 SITE 2 AC4 26 ASN B 120 SER B 121 TYR B 144 LEU B 166 SITE 3 AC4 26 ALA B 167 THR B 168 ARG B 177 ASP B 179 SITE 4 AC4 26 LEU B 180 LEU B 181 ASP B 184 PHE B 185 SITE 5 AC4 26 VAL B 196 LEU B 197 PHE B 198 ARG B 204 SITE 6 AC4 26 LYS B 242 ARG B 270 TYR B 272 NAI B 401 SITE 7 AC4 26 HOH B 510 HOH B 544 CRYST1 98.723 98.852 72.939 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010129 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010116 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013710 0.00000