HEADER OXIDOREDUCTASE 02-FEB-20 6VPB TITLE A NOVEL MEMBRANE-BOUND 6-PHOSPHOGLUCONATE DEHYDROGENASE FROM THE TITLE 2 ACETIC ACID BACTERIA GLUCONACETOBACTER DIAZOTROPHICUS (GD6PGD) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 6-PHOSPHOGLUCONATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 6-PHOSPHOGLUCONATE DEHYDROGENASE,DECARBOXYLATING SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLUCONACETOBACTER DIAZOTROPHICUS (STRAIN ATCC SOURCE 3 49037 / DSM 5601 / PAL5); SOURCE 4 ORGANISM_TAXID: 272568; SOURCE 5 STRAIN: ATCC 49037 / DSM 5601 / PAL5 KEYWDS 6-PHOSPHOGLUCONATE DEHYDROGENASE, GLUCONACETOBACTER DIAZOTROPHICUS, KEYWDS 2 MEMBRANE-BOUND PROTEIN, 6-PHOSPHO-D-GLUCONATE, NAD+, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.RODRIGUEZ-ROMERO,A.RODRIGUEZ-HERNANDEZ REVDAT 3 06-MAR-24 6VPB 1 REMARK REVDAT 2 10-MAR-21 6VPB 1 JRNL REVDAT 1 22-JUL-20 6VPB 0 JRNL AUTH P.D.SARMIENTO-PAVIA,A.RODRIGUEZ-HERNANDEZ, JRNL AUTH 2 A.RODRIGUEZ-ROMERO,M.E.SOSA-TORRES JRNL TITL THE STRUCTURE OF A NOVEL MEMBRANE-ASSOCIATED JRNL TITL 2 6-PHOSPHOGLUCONATE DEHYDROGENASE FROM GLUCONACETOBACTER JRNL TITL 3 DIAZOTROPHICUS (GD6PGD) REVEALS A SUBFAMILY OF SHORT-CHAIN JRNL TITL 4 6PGDS. JRNL REF FEBS J. V. 288 1286 2021 JRNL REFN ISSN 1742-464X JRNL PMID 32621793 JRNL DOI 10.1111/FEBS.15472 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 48489 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.060 REMARK 3 FREE R VALUE TEST SET COUNT : 997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.4800 - 3.5700 0.99 6904 145 0.1459 0.1703 REMARK 3 2 3.5700 - 2.8400 0.99 6765 144 0.1776 0.2352 REMARK 3 3 2.8400 - 2.4800 0.98 6717 143 0.2027 0.2383 REMARK 3 4 2.4800 - 2.2500 0.99 6786 141 0.2074 0.2530 REMARK 3 5 2.2500 - 2.0900 1.00 6811 141 0.2136 0.2666 REMARK 3 6 2.0900 - 1.9700 1.00 6803 143 0.2170 0.2397 REMARK 3 7 1.9700 - 1.8700 0.99 6706 140 0.2774 0.3378 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.234 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.023 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4859 REMARK 3 ANGLE : 1.007 6592 REMARK 3 CHIRALITY : 0.062 738 REMARK 3 PLANARITY : 0.007 867 REMARK 3 DIHEDRAL : 7.562 3891 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 1 THROUGH 43 OR REMARK 3 (RESID 44 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 45 REMARK 3 THROUGH 90 OR (RESID 91 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 92 THROUGH 132 OR (RESID 133 REMARK 3 THROUGH 134 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 135 THROUGH 143 OR (RESID 144 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 145 THROUGH 226 OR (RESID 227 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 228 THROUGH 248 REMARK 3 OR RESID 250 THROUGH 277 OR RESID 279 REMARK 3 THROUGH 283 OR RESID 285 THROUGH 295 OR REMARK 3 RESID 297 THROUGH 321 OR (RESID 322 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 323 THROUGH 324)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 1 THROUGH 10 OR REMARK 3 (RESID 11 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 12 REMARK 3 THROUGH 40 OR (RESID 41 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 42 THROUGH 99 OR (RESID 100 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 101 THROUGH 127 OR REMARK 3 RESID 132 THROUGH 248 OR RESID 250 REMARK 3 THROUGH 267 OR (RESID 268 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 269 THROUGH 277 OR RESID 279 REMARK 3 THROUGH 283 OR RESID 285 THROUGH 295 OR REMARK 3 RESID 297 THROUGH 324)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VPB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1000246620. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48489 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 36.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 16.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 51.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM SODIUM PHOSPHATE PH 6.0, 0.1 % REMARK 280 TRITON X-100, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.88000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.04850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.88000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.04850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -215.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 614 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 668 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 127 REMARK 465 GLY A 128 REMARK 465 VAL A 129 REMARK 465 TRP A 130 REMARK 465 GLY A 325 REMARK 465 GLY A 326 REMARK 465 HIS A 327 REMARK 465 VAL A 328 REMARK 465 GLU A 329 REMARK 465 LYS A 330 REMARK 465 LYS A 331 REMARK 465 ASP A 332 REMARK 465 GLY B 325 REMARK 465 GLY B 326 REMARK 465 HIS B 327 REMARK 465 VAL B 328 REMARK 465 GLU B 329 REMARK 465 LYS B 330 REMARK 465 LYS B 331 REMARK 465 ASP B 332 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 10 CG CD NE CZ NH1 NH2 REMARK 470 MET A 11 CG SD CE REMARK 470 ARG A 31 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 38 CG CD CE NZ REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 GLU A 76 CG CD OE1 OE2 REMARK 470 ASN A 100 CG OD1 ND2 REMARK 470 ARG A 134 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 163 CG OD1 OD2 REMARK 470 ASP A 169 CG OD1 OD2 REMARK 470 LYS A 172 CG CD CE NZ REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 GLU A 268 CG CD OE1 OE2 REMARK 470 SER A 276 OG REMARK 470 ARG A 321 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 10 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 31 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 38 CG CD CE NZ REMARK 470 GLU B 44 CG CD OE1 OE2 REMARK 470 LYS B 64 CG CD CE NZ REMARK 470 GLU B 76 CG CD OE1 OE2 REMARK 470 LYS B 91 CG CD CE NZ REMARK 470 VAL B 129 CG1 CG2 REMARK 470 TRP B 130 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 130 CZ3 CH2 REMARK 470 GLU B 133 CG CD OE1 OE2 REMARK 470 ARG B 134 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 144 CG CD CE NZ REMARK 470 ASP B 163 CG OD1 OD2 REMARK 470 ASP B 169 CG OD1 OD2 REMARK 470 LYS B 172 CG CD CE NZ REMARK 470 LYS B 224 CG CD CE NZ REMARK 470 GLU B 227 CG CD OE1 OE2 REMARK 470 SER B 276 OG REMARK 470 ARG B 321 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 322 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 92 -0.20 75.26 REMARK 500 ASP A 169 45.91 -88.17 REMARK 500 SER B 267 -39.36 -39.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 668 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A 669 DISTANCE = 6.66 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 275 OD1 REMARK 620 2 SER B 276 O 88.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 402 DBREF 6VPB A 1 332 UNP A9H324 A9H324_GLUDA 1 332 DBREF 6VPB B 1 332 UNP A9H324 A9H324_GLUDA 1 332 SEQRES 1 A 332 MET GLN ILE GLY ILE ILE GLY LEU GLY ARG MET GLY GLY SEQRES 2 A 332 ASN ILE ALA VAL ARG LEU SER ARG HIS GLY HIS ASP VAL SEQRES 3 A 332 VAL LEU PHE ASP ARG ASP ALA ALA THR VAL SER LYS VAL SEQRES 4 A 332 SER GLU ARG ILE GLU GLY GLY ARG GLY VAL ALA ALA THR SEQRES 5 A 332 SER LEU PRO ASP LEU VAL ALA LYS LEU THR ALA LYS ARG SEQRES 6 A 332 LYS ILE VAL TRP VAL MET LEU PRO CYS GLY GLU ILE THR SEQRES 7 A 332 GLU ASN ALA VAL GLN GLU LEU TYR GLY LEU LEU GLY LYS SEQRES 8 A 332 ASP ASP ILE VAL ILE ASP GLY GLY ASN THR TYR TYR LYS SEQRES 9 A 332 ASP ASP ILE ARG ARG ALA ALA GLN LEU ALA ASP LYS GLY SEQRES 10 A 332 ILE HIS TYR VAL ASP VAL GLY THR SER GLY GLY VAL TRP SEQRES 11 A 332 GLY LEU GLU ARG GLY TYR CYS MET MET TYR GLY GLY THR SEQRES 12 A 332 LYS ASP SER THR ASP HIS ILE ASP PRO ILE LEU ASP ALA SEQRES 13 A 332 LEU ALA PRO GLY LYS GLY ASP VAL ALA PRO THR PRO ASP SEQRES 14 A 332 ARG GLY LYS PRO GLY LEU ASP PRO ARG ALA GLU LYS GLY SEQRES 15 A 332 TYR LEU HIS CYS GLY PRO ALA GLY SER GLY HIS PHE VAL SEQRES 16 A 332 LYS MET VAL HIS ASN GLY ILE GLU TYR GLY MET MET GLN SEQRES 17 A 332 ALA PHE ALA GLU GLY PHE ASP ILE MET LYS SER LYS ASN SEQRES 18 A 332 SER PRO LYS LEU PRO GLU ASP GLN ARG PHE ASP LEU ASN SEQRES 19 A 332 MET ALA ASP ILE ALA GLU VAL TRP ARG ARG GLY SER VAL SEQRES 20 A 332 VAL SER SER TRP LEU LEU ASP LEU THR ALA GLU ALA LEU SEQRES 21 A 332 ALA LYS ASN ALA SER LEU SER GLU PHE THR GLY GLU VAL SEQRES 22 A 332 ALA ASP SER GLY GLU GLY ARG TRP THR LEU GLU ALA ALA SEQRES 23 A 332 ILE GLU GLU ALA VAL PRO ALA PRO VAL ILE THR ALA SER SEQRES 24 A 332 LEU PHE THR ARG PHE ARG SER ARG THR GLY ASN ASN TYR SEQRES 25 A 332 ALA GLU LYS VAL LEU SER ALA MET ARG PHE GLY PHE GLY SEQRES 26 A 332 GLY HIS VAL GLU LYS LYS ASP SEQRES 1 B 332 MET GLN ILE GLY ILE ILE GLY LEU GLY ARG MET GLY GLY SEQRES 2 B 332 ASN ILE ALA VAL ARG LEU SER ARG HIS GLY HIS ASP VAL SEQRES 3 B 332 VAL LEU PHE ASP ARG ASP ALA ALA THR VAL SER LYS VAL SEQRES 4 B 332 SER GLU ARG ILE GLU GLY GLY ARG GLY VAL ALA ALA THR SEQRES 5 B 332 SER LEU PRO ASP LEU VAL ALA LYS LEU THR ALA LYS ARG SEQRES 6 B 332 LYS ILE VAL TRP VAL MET LEU PRO CYS GLY GLU ILE THR SEQRES 7 B 332 GLU ASN ALA VAL GLN GLU LEU TYR GLY LEU LEU GLY LYS SEQRES 8 B 332 ASP ASP ILE VAL ILE ASP GLY GLY ASN THR TYR TYR LYS SEQRES 9 B 332 ASP ASP ILE ARG ARG ALA ALA GLN LEU ALA ASP LYS GLY SEQRES 10 B 332 ILE HIS TYR VAL ASP VAL GLY THR SER GLY GLY VAL TRP SEQRES 11 B 332 GLY LEU GLU ARG GLY TYR CYS MET MET TYR GLY GLY THR SEQRES 12 B 332 LYS ASP SER THR ASP HIS ILE ASP PRO ILE LEU ASP ALA SEQRES 13 B 332 LEU ALA PRO GLY LYS GLY ASP VAL ALA PRO THR PRO ASP SEQRES 14 B 332 ARG GLY LYS PRO GLY LEU ASP PRO ARG ALA GLU LYS GLY SEQRES 15 B 332 TYR LEU HIS CYS GLY PRO ALA GLY SER GLY HIS PHE VAL SEQRES 16 B 332 LYS MET VAL HIS ASN GLY ILE GLU TYR GLY MET MET GLN SEQRES 17 B 332 ALA PHE ALA GLU GLY PHE ASP ILE MET LYS SER LYS ASN SEQRES 18 B 332 SER PRO LYS LEU PRO GLU ASP GLN ARG PHE ASP LEU ASN SEQRES 19 B 332 MET ALA ASP ILE ALA GLU VAL TRP ARG ARG GLY SER VAL SEQRES 20 B 332 VAL SER SER TRP LEU LEU ASP LEU THR ALA GLU ALA LEU SEQRES 21 B 332 ALA LYS ASN ALA SER LEU SER GLU PHE THR GLY GLU VAL SEQRES 22 B 332 ALA ASP SER GLY GLU GLY ARG TRP THR LEU GLU ALA ALA SEQRES 23 B 332 ILE GLU GLU ALA VAL PRO ALA PRO VAL ILE THR ALA SER SEQRES 24 B 332 LEU PHE THR ARG PHE ARG SER ARG THR GLY ASN ASN TYR SEQRES 25 B 332 ALA GLU LYS VAL LEU SER ALA MET ARG PHE GLY PHE GLY SEQRES 26 B 332 GLY HIS VAL GLU LYS LYS ASP HET PEG A 401 7 HET IPA B 401 4 HET MG B 402 1 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM IPA ISOPROPYL ALCOHOL HETNAM MG MAGNESIUM ION HETSYN IPA 2-PROPANOL FORMUL 3 PEG C4 H10 O3 FORMUL 4 IPA C3 H8 O FORMUL 5 MG MG 2+ FORMUL 6 HOH *349(H2 O) HELIX 1 AA1 GLY A 9 HIS A 22 1 14 HELIX 2 AA2 ASP A 32 ILE A 43 1 12 HELIX 3 AA3 SER A 53 LYS A 60 1 8 HELIX 4 AA4 GLY A 75 LEU A 89 1 15 HELIX 5 AA5 TYR A 102 ASP A 115 1 14 HELIX 6 AA6 THR A 143 ALA A 158 1 16 HELIX 7 AA7 ASP A 176 LYS A 181 5 6 HELIX 8 AA8 GLY A 190 SER A 219 1 30 HELIX 9 AA9 LYS A 220 SER A 222 5 3 HELIX 10 AB1 PRO A 226 ARG A 230 5 5 HELIX 11 AB2 ASN A 234 ARG A 243 1 10 HELIX 12 AB3 SER A 250 ASN A 263 1 14 HELIX 13 AB4 GLY A 277 ALA A 290 1 14 HELIX 14 AB5 ALA A 293 ARG A 307 1 15 HELIX 15 AB6 ASN A 311 PHE A 324 1 14 HELIX 16 AB7 GLY B 9 HIS B 22 1 14 HELIX 17 AB8 ASP B 32 ARG B 42 1 11 HELIX 18 AB9 SER B 53 LEU B 61 1 9 HELIX 19 AC1 GLY B 75 LEU B 89 1 15 HELIX 20 AC2 TYR B 102 ASP B 115 1 14 HELIX 21 AC3 TRP B 130 GLY B 135 1 6 HELIX 22 AC4 THR B 143 ILE B 150 1 8 HELIX 23 AC5 ILE B 150 ALA B 158 1 9 HELIX 24 AC6 ASP B 176 LYS B 181 5 6 HELIX 25 AC7 GLY B 190 SER B 219 1 30 HELIX 26 AC8 LYS B 220 SER B 222 5 3 HELIX 27 AC9 PRO B 226 ARG B 230 5 5 HELIX 28 AD1 ASN B 234 ARG B 243 1 10 HELIX 29 AD2 SER B 250 ASN B 263 1 14 HELIX 30 AD3 SER B 276 GLU B 289 1 14 HELIX 31 AD4 ALA B 293 ARG B 307 1 15 HELIX 32 AD5 ASN B 311 PHE B 324 1 14 SHEET 1 AA1 8 GLY A 48 ALA A 50 0 SHEET 2 AA1 8 ASP A 25 PHE A 29 1 N LEU A 28 O VAL A 49 SHEET 3 AA1 8 GLN A 2 ILE A 6 1 N ILE A 5 O VAL A 27 SHEET 4 AA1 8 ILE A 67 VAL A 70 1 O TRP A 69 N GLY A 4 SHEET 5 AA1 8 ILE A 94 ASP A 97 1 O ILE A 96 N VAL A 70 SHEET 6 AA1 8 HIS A 119 SER A 126 1 O HIS A 119 N VAL A 95 SHEET 7 AA1 8 CYS A 137 GLY A 141 -1 O MET A 139 N GLY A 124 SHEET 8 AA1 8 TYR A 183 GLY A 187 1 O CYS A 186 N TYR A 140 SHEET 1 AA2 8 GLY B 48 ALA B 50 0 SHEET 2 AA2 8 ASP B 25 PHE B 29 1 N LEU B 28 O VAL B 49 SHEET 3 AA2 8 GLN B 2 ILE B 6 1 N ILE B 5 O VAL B 27 SHEET 4 AA2 8 ILE B 67 VAL B 70 1 O TRP B 69 N GLY B 4 SHEET 5 AA2 8 ILE B 94 ASP B 97 1 O ILE B 96 N VAL B 70 SHEET 6 AA2 8 HIS B 119 SER B 126 1 O HIS B 119 N VAL B 95 SHEET 7 AA2 8 CYS B 137 GLY B 141 -1 O MET B 139 N GLY B 124 SHEET 8 AA2 8 TYR B 183 GLY B 187 1 O CYS B 186 N TYR B 140 LINK OD1 ASP B 275 MG MG B 402 1555 1555 2.89 LINK O SER B 276 MG MG B 402 1555 1555 2.16 SITE 1 AC1 8 ASP A 215 SER A 219 THR A 308 ASN A 311 SITE 2 AC1 8 TYR A 312 HOH A 502 ALA B 290 PRO B 292 SITE 1 AC2 3 TYR B 204 SER B 276 ARG B 303 SITE 1 AC3 6 TYR B 204 ASP B 275 SER B 276 GLY B 279 SITE 2 AC3 6 ARG B 280 LEU B 300 CRYST1 91.760 82.097 81.831 90.00 103.41 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010898 0.000000 0.002598 0.00000 SCALE2 0.000000 0.012181 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012563 0.00000