data_6VPS # _entry.id 6VPS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6VPS pdb_00006vps 10.2210/pdb6vps/pdb WWPDB D_1000246591 ? ? EMDB EMD-21316 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-03-18 2 'Structure model' 1 1 2024-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6VPS _pdbx_database_status.recvd_initial_deposition_date 2020-02-04 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of the amyloid core of Drosophila Orb2 isolated from head' _pdbx_database_related.db_id EMD-21316 _pdbx_database_related.content_type 'associated EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hervas, R.' 1 0000-0001-6393-6058 'Rau, M.J.' 2 ? 'Park, Y.' 3 ? 'Zhang, W.' 4 ? 'Murzin, A.G.' 5 ? 'Fitzpatrick, J.A.J.' 6 ? 'Scheres, S.H.W.' 7 ? 'Si, K.' 8 0000-0002-9613-6273 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Science _citation.journal_id_ASTM SCIEAS _citation.journal_id_CSD 0038 _citation.journal_id_ISSN 1095-9203 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 367 _citation.language ? _citation.page_first 1230 _citation.page_last 1234 _citation.title 'Cryo-EM structure of a neuronal functional amyloid implicated in memory persistence in Drosophila' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1126/science.aba3526 _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hervas, R.' 1 0000-0001-6393-6058 primary 'Rau, M.J.' 2 ? primary 'Park, Y.' 3 ? primary 'Zhang, W.' 4 ? primary 'Murzin, A.G.' 5 ? primary 'Fitzpatrick, J.A.J.' 6 ? primary 'Scheres, S.H.W.' 7 ? primary 'Si, K.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'Translational regulator orb2' _entity.formula_weight 3974.170 _entity.pdbx_number_of_molecules 9 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'UNP residues 176-206' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code QLHQQQHQQQHQQHQQHQQQQQLHQHQQQLS _entity_poly.pdbx_seq_one_letter_code_can QLHQQQHQQQHQQHQQHQQQQQLHQHQQQLS _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H,I _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 LEU n 1 3 HIS n 1 4 GLN n 1 5 GLN n 1 6 GLN n 1 7 HIS n 1 8 GLN n 1 9 GLN n 1 10 GLN n 1 11 HIS n 1 12 GLN n 1 13 GLN n 1 14 HIS n 1 15 GLN n 1 16 GLN n 1 17 HIS n 1 18 GLN n 1 19 GLN n 1 20 GLN n 1 21 GLN n 1 22 GLN n 1 23 LEU n 1 24 HIS n 1 25 GLN n 1 26 HIS n 1 27 GLN n 1 28 GLN n 1 29 GLN n 1 30 LEU n 1 31 SER n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 31 _entity_src_nat.common_name 'Fruit fly' _entity_src_nat.pdbx_organism_scientific 'Drosophila melanogaster' _entity_src_nat.pdbx_ncbi_taxonomy_id 7227 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 23 23 GLN GLN A . n A 1 2 LEU 2 24 24 LEU LEU A . n A 1 3 HIS 3 25 25 HIS HIS A . n A 1 4 GLN 4 26 26 GLN GLN A . n A 1 5 GLN 5 27 27 GLN GLN A . n A 1 6 GLN 6 28 28 GLN GLN A . n A 1 7 HIS 7 29 29 HIS HIS A . n A 1 8 GLN 8 30 30 GLN GLN A . n A 1 9 GLN 9 31 31 GLN GLN A . n A 1 10 GLN 10 32 32 GLN GLN A . n A 1 11 HIS 11 33 33 HIS HIS A . n A 1 12 GLN 12 34 34 GLN GLN A . n A 1 13 GLN 13 35 35 GLN GLN A . n A 1 14 HIS 14 36 36 HIS HIS A . n A 1 15 GLN 15 37 37 GLN GLN A . n A 1 16 GLN 16 38 38 GLN GLN A . n A 1 17 HIS 17 39 39 HIS HIS A . n A 1 18 GLN 18 40 40 GLN GLN A . n A 1 19 GLN 19 41 41 GLN GLN A . n A 1 20 GLN 20 42 42 GLN GLN A . n A 1 21 GLN 21 43 43 GLN GLN A . n A 1 22 GLN 22 44 44 GLN GLN A . n A 1 23 LEU 23 45 45 LEU LEU A . n A 1 24 HIS 24 46 46 HIS HIS A . n A 1 25 GLN 25 47 47 GLN GLN A . n A 1 26 HIS 26 48 48 HIS HIS A . n A 1 27 GLN 27 49 49 GLN GLN A . n A 1 28 GLN 28 50 50 GLN GLN A . n A 1 29 GLN 29 51 51 GLN GLN A . n A 1 30 LEU 30 52 52 LEU LEU A . n A 1 31 SER 31 53 53 SER SER A . n B 1 1 GLN 1 23 23 GLN GLN B . n B 1 2 LEU 2 24 24 LEU LEU B . n B 1 3 HIS 3 25 25 HIS HIS B . n B 1 4 GLN 4 26 26 GLN GLN B . n B 1 5 GLN 5 27 27 GLN GLN B . n B 1 6 GLN 6 28 28 GLN GLN B . n B 1 7 HIS 7 29 29 HIS HIS B . n B 1 8 GLN 8 30 30 GLN GLN B . n B 1 9 GLN 9 31 31 GLN GLN B . n B 1 10 GLN 10 32 32 GLN GLN B . n B 1 11 HIS 11 33 33 HIS HIS B . n B 1 12 GLN 12 34 34 GLN GLN B . n B 1 13 GLN 13 35 35 GLN GLN B . n B 1 14 HIS 14 36 36 HIS HIS B . n B 1 15 GLN 15 37 37 GLN GLN B . n B 1 16 GLN 16 38 38 GLN GLN B . n B 1 17 HIS 17 39 39 HIS HIS B . n B 1 18 GLN 18 40 40 GLN GLN B . n B 1 19 GLN 19 41 41 GLN GLN B . n B 1 20 GLN 20 42 42 GLN GLN B . n B 1 21 GLN 21 43 43 GLN GLN B . n B 1 22 GLN 22 44 44 GLN GLN B . n B 1 23 LEU 23 45 45 LEU LEU B . n B 1 24 HIS 24 46 46 HIS HIS B . n B 1 25 GLN 25 47 47 GLN GLN B . n B 1 26 HIS 26 48 48 HIS HIS B . n B 1 27 GLN 27 49 49 GLN GLN B . n B 1 28 GLN 28 50 50 GLN GLN B . n B 1 29 GLN 29 51 51 GLN GLN B . n B 1 30 LEU 30 52 52 LEU LEU B . n B 1 31 SER 31 53 53 SER SER B . n C 1 1 GLN 1 23 23 GLN GLN C . n C 1 2 LEU 2 24 24 LEU LEU C . n C 1 3 HIS 3 25 25 HIS HIS C . n C 1 4 GLN 4 26 26 GLN GLN C . n C 1 5 GLN 5 27 27 GLN GLN C . n C 1 6 GLN 6 28 28 GLN GLN C . n C 1 7 HIS 7 29 29 HIS HIS C . n C 1 8 GLN 8 30 30 GLN GLN C . n C 1 9 GLN 9 31 31 GLN GLN C . n C 1 10 GLN 10 32 32 GLN GLN C . n C 1 11 HIS 11 33 33 HIS HIS C . n C 1 12 GLN 12 34 34 GLN GLN C . n C 1 13 GLN 13 35 35 GLN GLN C . n C 1 14 HIS 14 36 36 HIS HIS C . n C 1 15 GLN 15 37 37 GLN GLN C . n C 1 16 GLN 16 38 38 GLN GLN C . n C 1 17 HIS 17 39 39 HIS HIS C . n C 1 18 GLN 18 40 40 GLN GLN C . n C 1 19 GLN 19 41 41 GLN GLN C . n C 1 20 GLN 20 42 42 GLN GLN C . n C 1 21 GLN 21 43 43 GLN GLN C . n C 1 22 GLN 22 44 44 GLN GLN C . n C 1 23 LEU 23 45 45 LEU LEU C . n C 1 24 HIS 24 46 46 HIS HIS C . n C 1 25 GLN 25 47 47 GLN GLN C . n C 1 26 HIS 26 48 48 HIS HIS C . n C 1 27 GLN 27 49 49 GLN GLN C . n C 1 28 GLN 28 50 50 GLN GLN C . n C 1 29 GLN 29 51 51 GLN GLN C . n C 1 30 LEU 30 52 52 LEU LEU C . n C 1 31 SER 31 53 53 SER SER C . n D 1 1 GLN 1 23 23 GLN GLN D . n D 1 2 LEU 2 24 24 LEU LEU D . n D 1 3 HIS 3 25 25 HIS HIS D . n D 1 4 GLN 4 26 26 GLN GLN D . n D 1 5 GLN 5 27 27 GLN GLN D . n D 1 6 GLN 6 28 28 GLN GLN D . n D 1 7 HIS 7 29 29 HIS HIS D . n D 1 8 GLN 8 30 30 GLN GLN D . n D 1 9 GLN 9 31 31 GLN GLN D . n D 1 10 GLN 10 32 32 GLN GLN D . n D 1 11 HIS 11 33 33 HIS HIS D . n D 1 12 GLN 12 34 34 GLN GLN D . n D 1 13 GLN 13 35 35 GLN GLN D . n D 1 14 HIS 14 36 36 HIS HIS D . n D 1 15 GLN 15 37 37 GLN GLN D . n D 1 16 GLN 16 38 38 GLN GLN D . n D 1 17 HIS 17 39 39 HIS HIS D . n D 1 18 GLN 18 40 40 GLN GLN D . n D 1 19 GLN 19 41 41 GLN GLN D . n D 1 20 GLN 20 42 42 GLN GLN D . n D 1 21 GLN 21 43 43 GLN GLN D . n D 1 22 GLN 22 44 44 GLN GLN D . n D 1 23 LEU 23 45 45 LEU LEU D . n D 1 24 HIS 24 46 46 HIS HIS D . n D 1 25 GLN 25 47 47 GLN GLN D . n D 1 26 HIS 26 48 48 HIS HIS D . n D 1 27 GLN 27 49 49 GLN GLN D . n D 1 28 GLN 28 50 50 GLN GLN D . n D 1 29 GLN 29 51 51 GLN GLN D . n D 1 30 LEU 30 52 52 LEU LEU D . n D 1 31 SER 31 53 53 SER SER D . n E 1 1 GLN 1 23 23 GLN GLN E . n E 1 2 LEU 2 24 24 LEU LEU E . n E 1 3 HIS 3 25 25 HIS HIS E . n E 1 4 GLN 4 26 26 GLN GLN E . n E 1 5 GLN 5 27 27 GLN GLN E . n E 1 6 GLN 6 28 28 GLN GLN E . n E 1 7 HIS 7 29 29 HIS HIS E . n E 1 8 GLN 8 30 30 GLN GLN E . n E 1 9 GLN 9 31 31 GLN GLN E . n E 1 10 GLN 10 32 32 GLN GLN E . n E 1 11 HIS 11 33 33 HIS HIS E . n E 1 12 GLN 12 34 34 GLN GLN E . n E 1 13 GLN 13 35 35 GLN GLN E . n E 1 14 HIS 14 36 36 HIS HIS E . n E 1 15 GLN 15 37 37 GLN GLN E . n E 1 16 GLN 16 38 38 GLN GLN E . n E 1 17 HIS 17 39 39 HIS HIS E . n E 1 18 GLN 18 40 40 GLN GLN E . n E 1 19 GLN 19 41 41 GLN GLN E . n E 1 20 GLN 20 42 42 GLN GLN E . n E 1 21 GLN 21 43 43 GLN GLN E . n E 1 22 GLN 22 44 44 GLN GLN E . n E 1 23 LEU 23 45 45 LEU LEU E . n E 1 24 HIS 24 46 46 HIS HIS E . n E 1 25 GLN 25 47 47 GLN GLN E . n E 1 26 HIS 26 48 48 HIS HIS E . n E 1 27 GLN 27 49 49 GLN GLN E . n E 1 28 GLN 28 50 50 GLN GLN E . n E 1 29 GLN 29 51 51 GLN GLN E . n E 1 30 LEU 30 52 52 LEU LEU E . n E 1 31 SER 31 53 53 SER SER E . n F 1 1 GLN 1 23 23 GLN GLN F . n F 1 2 LEU 2 24 24 LEU LEU F . n F 1 3 HIS 3 25 25 HIS HIS F . n F 1 4 GLN 4 26 26 GLN GLN F . n F 1 5 GLN 5 27 27 GLN GLN F . n F 1 6 GLN 6 28 28 GLN GLN F . n F 1 7 HIS 7 29 29 HIS HIS F . n F 1 8 GLN 8 30 30 GLN GLN F . n F 1 9 GLN 9 31 31 GLN GLN F . n F 1 10 GLN 10 32 32 GLN GLN F . n F 1 11 HIS 11 33 33 HIS HIS F . n F 1 12 GLN 12 34 34 GLN GLN F . n F 1 13 GLN 13 35 35 GLN GLN F . n F 1 14 HIS 14 36 36 HIS HIS F . n F 1 15 GLN 15 37 37 GLN GLN F . n F 1 16 GLN 16 38 38 GLN GLN F . n F 1 17 HIS 17 39 39 HIS HIS F . n F 1 18 GLN 18 40 40 GLN GLN F . n F 1 19 GLN 19 41 41 GLN GLN F . n F 1 20 GLN 20 42 42 GLN GLN F . n F 1 21 GLN 21 43 43 GLN GLN F . n F 1 22 GLN 22 44 44 GLN GLN F . n F 1 23 LEU 23 45 45 LEU LEU F . n F 1 24 HIS 24 46 46 HIS HIS F . n F 1 25 GLN 25 47 47 GLN GLN F . n F 1 26 HIS 26 48 48 HIS HIS F . n F 1 27 GLN 27 49 49 GLN GLN F . n F 1 28 GLN 28 50 50 GLN GLN F . n F 1 29 GLN 29 51 51 GLN GLN F . n F 1 30 LEU 30 52 52 LEU LEU F . n F 1 31 SER 31 53 53 SER SER F . n G 1 1 GLN 1 23 23 GLN GLN G . n G 1 2 LEU 2 24 24 LEU LEU G . n G 1 3 HIS 3 25 25 HIS HIS G . n G 1 4 GLN 4 26 26 GLN GLN G . n G 1 5 GLN 5 27 27 GLN GLN G . n G 1 6 GLN 6 28 28 GLN GLN G . n G 1 7 HIS 7 29 29 HIS HIS G . n G 1 8 GLN 8 30 30 GLN GLN G . n G 1 9 GLN 9 31 31 GLN GLN G . n G 1 10 GLN 10 32 32 GLN GLN G . n G 1 11 HIS 11 33 33 HIS HIS G . n G 1 12 GLN 12 34 34 GLN GLN G . n G 1 13 GLN 13 35 35 GLN GLN G . n G 1 14 HIS 14 36 36 HIS HIS G . n G 1 15 GLN 15 37 37 GLN GLN G . n G 1 16 GLN 16 38 38 GLN GLN G . n G 1 17 HIS 17 39 39 HIS HIS G . n G 1 18 GLN 18 40 40 GLN GLN G . n G 1 19 GLN 19 41 41 GLN GLN G . n G 1 20 GLN 20 42 42 GLN GLN G . n G 1 21 GLN 21 43 43 GLN GLN G . n G 1 22 GLN 22 44 44 GLN GLN G . n G 1 23 LEU 23 45 45 LEU LEU G . n G 1 24 HIS 24 46 46 HIS HIS G . n G 1 25 GLN 25 47 47 GLN GLN G . n G 1 26 HIS 26 48 48 HIS HIS G . n G 1 27 GLN 27 49 49 GLN GLN G . n G 1 28 GLN 28 50 50 GLN GLN G . n G 1 29 GLN 29 51 51 GLN GLN G . n G 1 30 LEU 30 52 52 LEU LEU G . n G 1 31 SER 31 53 53 SER SER G . n H 1 1 GLN 1 23 23 GLN GLN H . n H 1 2 LEU 2 24 24 LEU LEU H . n H 1 3 HIS 3 25 25 HIS HIS H . n H 1 4 GLN 4 26 26 GLN GLN H . n H 1 5 GLN 5 27 27 GLN GLN H . n H 1 6 GLN 6 28 28 GLN GLN H . n H 1 7 HIS 7 29 29 HIS HIS H . n H 1 8 GLN 8 30 30 GLN GLN H . n H 1 9 GLN 9 31 31 GLN GLN H . n H 1 10 GLN 10 32 32 GLN GLN H . n H 1 11 HIS 11 33 33 HIS HIS H . n H 1 12 GLN 12 34 34 GLN GLN H . n H 1 13 GLN 13 35 35 GLN GLN H . n H 1 14 HIS 14 36 36 HIS HIS H . n H 1 15 GLN 15 37 37 GLN GLN H . n H 1 16 GLN 16 38 38 GLN GLN H . n H 1 17 HIS 17 39 39 HIS HIS H . n H 1 18 GLN 18 40 40 GLN GLN H . n H 1 19 GLN 19 41 41 GLN GLN H . n H 1 20 GLN 20 42 42 GLN GLN H . n H 1 21 GLN 21 43 43 GLN GLN H . n H 1 22 GLN 22 44 44 GLN GLN H . n H 1 23 LEU 23 45 45 LEU LEU H . n H 1 24 HIS 24 46 46 HIS HIS H . n H 1 25 GLN 25 47 47 GLN GLN H . n H 1 26 HIS 26 48 48 HIS HIS H . n H 1 27 GLN 27 49 49 GLN GLN H . n H 1 28 GLN 28 50 50 GLN GLN H . n H 1 29 GLN 29 51 51 GLN GLN H . n H 1 30 LEU 30 52 52 LEU LEU H . n H 1 31 SER 31 53 53 SER SER H . n I 1 1 GLN 1 23 23 GLN GLN I . n I 1 2 LEU 2 24 24 LEU LEU I . n I 1 3 HIS 3 25 25 HIS HIS I . n I 1 4 GLN 4 26 26 GLN GLN I . n I 1 5 GLN 5 27 27 GLN GLN I . n I 1 6 GLN 6 28 28 GLN GLN I . n I 1 7 HIS 7 29 29 HIS HIS I . n I 1 8 GLN 8 30 30 GLN GLN I . n I 1 9 GLN 9 31 31 GLN GLN I . n I 1 10 GLN 10 32 32 GLN GLN I . n I 1 11 HIS 11 33 33 HIS HIS I . n I 1 12 GLN 12 34 34 GLN GLN I . n I 1 13 GLN 13 35 35 GLN GLN I . n I 1 14 HIS 14 36 36 HIS HIS I . n I 1 15 GLN 15 37 37 GLN GLN I . n I 1 16 GLN 16 38 38 GLN GLN I . n I 1 17 HIS 17 39 39 HIS HIS I . n I 1 18 GLN 18 40 40 GLN GLN I . n I 1 19 GLN 19 41 41 GLN GLN I . n I 1 20 GLN 20 42 42 GLN GLN I . n I 1 21 GLN 21 43 43 GLN GLN I . n I 1 22 GLN 22 44 44 GLN GLN I . n I 1 23 LEU 23 45 45 LEU LEU I . n I 1 24 HIS 24 46 46 HIS HIS I . n I 1 25 GLN 25 47 47 GLN GLN I . n I 1 26 HIS 26 48 48 HIS HIS I . n I 1 27 GLN 27 49 49 GLN GLN I . n I 1 28 GLN 28 50 50 GLN GLN I . n I 1 29 GLN 29 51 51 GLN GLN I . n I 1 30 LEU 30 52 52 LEU LEU I . n I 1 31 SER 31 53 53 SER SER I . n # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name REFMAC _software.os ? _software.os_version ? _software.type ? _software.version 5.8.0256 _software.pdbx_ordinal 1 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6VPS _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VPS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6VPS _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] 3.964 _refine.aniso_B[1][2] -0.057 _refine.aniso_B[1][3] -0.012 _refine.aniso_B[2][2] 3.926 _refine.aniso_B[2][3] -0.015 _refine.aniso_B[3][3] -7.890 _refine.B_iso_max ? _refine.B_iso_mean 46.615 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.854 _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6VPS _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.600 _refine.ls_d_res_low 86.720 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work 24927 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 100.000 _refine.ls_percent_reflns_R_free 0.000 _refine.ls_R_factor_all 0.322 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.3216 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work 0.322 _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'BABINET MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.370 _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B 10.458 _refine.overall_SU_ML 0.210 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall 0.8918 _refine.pdbx_average_fsc_work 0.8918 _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.013 0.012 2865 ? r_bond_refined_d ? ? 'ELECTRON MICROSCOPY' ? 0.998 1.616 3861 ? r_angle_refined_deg ? ? 'ELECTRON MICROSCOPY' ? 5.582 5.000 324 ? r_dihedral_angle_1_deg ? ? 'ELECTRON MICROSCOPY' ? 32.937 26.667 270 ? r_dihedral_angle_2_deg ? ? 'ELECTRON MICROSCOPY' ? 16.633 15.000 513 ? r_dihedral_angle_3_deg ? ? 'ELECTRON MICROSCOPY' ? 0.131 0.200 306 ? r_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.012 0.020 2484 ? r_gen_planes_refined ? ? 'ELECTRON MICROSCOPY' ? 0.153 0.200 1810 ? r_nbd_refined ? ? 'ELECTRON MICROSCOPY' ? 0.268 0.200 3004 ? r_nbtor_refined ? ? 'ELECTRON MICROSCOPY' ? 0.106 0.200 206 ? r_xyhbond_nbd_refined ? ? 'ELECTRON MICROSCOPY' ? 5.523 3.952 1188 ? r_mcbond_it ? ? 'ELECTRON MICROSCOPY' ? 8.553 5.836 1494 ? r_mcangle_it ? ? 'ELECTRON MICROSCOPY' ? 8.576 4.898 1677 ? r_scbond_it ? ? 'ELECTRON MICROSCOPY' ? 13.629 7.077 2349 ? r_scangle_it ? ? 'ELECTRON MICROSCOPY' ? 17.636 53.966 3568 ? r_lrange_it ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'ELECTRON MICROSCOPY' 2.600 2.667 1817 . 0 1817 100.0000 . 0.612 . . . 0.612 . . . . . 0.612 . 20 . 0.717 . 'ELECTRON MICROSCOPY' 2.667 2.741 1796 . 0 1796 100.0000 . 0.593 . . . 0.593 . . . . . 0.593 . 20 . 0.726 . 'ELECTRON MICROSCOPY' 2.741 2.820 1819 . 0 1819 100.0000 . 0.439 . . . 0.439 . . . . . 0.439 . 20 . 0.843 . 'ELECTRON MICROSCOPY' 2.820 2.907 1642 . 0 1642 100.0000 . 0.409 . . . 0.409 . . . . . 0.409 . 20 . 0.873 . 'ELECTRON MICROSCOPY' 2.907 3.002 1602 . 0 1602 100.0000 . 0.401 . . . 0.401 . . . . . 0.401 . 20 . 0.858 . 'ELECTRON MICROSCOPY' 3.002 3.107 1666 . 0 1666 100.0000 . 0.375 . . . 0.375 . . . . . 0.375 . 20 . 0.918 . 'ELECTRON MICROSCOPY' 3.107 3.224 1523 . 0 1523 100.0000 . 0.278 . . . 0.278 . . . . . 0.278 . 20 . 0.934 . 'ELECTRON MICROSCOPY' 3.224 3.356 1446 . 0 1446 100.0000 . 0.252 . . . 0.252 . . . . . 0.252 . 20 . 0.939 . 'ELECTRON MICROSCOPY' 3.356 3.505 1452 . 0 1452 100.0000 . 0.262 . . . 0.262 . . . . . 0.262 . 20 . 0.944 . 'ELECTRON MICROSCOPY' 3.505 3.675 1329 . 0 1329 100.0000 . 0.248 . . . 0.248 . . . . . 0.248 . 20 . 0.958 . 'ELECTRON MICROSCOPY' 3.675 3.874 1268 . 0 1268 100.0000 . 0.235 . . . 0.235 . . . . . 0.235 . 20 . 0.960 . 'ELECTRON MICROSCOPY' 3.874 4.108 1256 . 0 1256 100.0000 . 0.223 . . . 0.223 . . . . . 0.223 . 20 . 0.960 . 'ELECTRON MICROSCOPY' 4.108 4.391 1099 . 0 1099 100.0000 . 0.230 . . . 0.230 . . . . . 0.230 . 20 . 0.956 . 'ELECTRON MICROSCOPY' 4.391 4.742 1133 . 0 1133 100.0000 . 0.279 . . . 0.279 . . . . . 0.279 . 20 . 0.969 . 'ELECTRON MICROSCOPY' 4.742 5.193 934 . 0 934 100.0000 . 0.246 . . . 0.246 . . . . . 0.246 . 20 . 0.950 . 'ELECTRON MICROSCOPY' 5.193 5.803 903 . 0 903 100.0000 . 0.208 . . . 0.208 . . . . . 0.208 . 20 . 0.970 . 'ELECTRON MICROSCOPY' 5.803 6.696 784 . 0 784 100.0000 . 0.414 . . . 0.414 . . . . . 0.414 . 20 . 0.893 . 'ELECTRON MICROSCOPY' 6.696 8.189 645 . 0 645 100.0000 . 0.404 . . . 0.404 . . . . . 0.404 . 20 . 0.866 . 'ELECTRON MICROSCOPY' 8.189 11.530 519 . 0 519 100.0000 . 0.501 . . . 0.501 . . . . . 0.501 . 20 . 0.889 . 'ELECTRON MICROSCOPY' 11.530 86.720 294 . 0 294 100.0000 . 0.773 . . . 0.773 . . . . . 0.773 . 20 . 0.934 . # _struct.entry_id 6VPS _struct.title 'Cryo-EM structure of the amyloid core of Drosophila Orb2 isolated from head' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6VPS _struct_keywords.text 'amyloid, prion-like, long-term memory, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ORB2_DROME _struct_ref.pdbx_db_accession Q9VSR3 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code QLHQQQHQQQHQQHQQHQQQQQLHQHQQQLS _struct_ref.pdbx_align_begin 176 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6VPS A 1 ? 31 ? Q9VSR3 176 ? 206 ? 23 53 2 1 6VPS B 1 ? 31 ? Q9VSR3 176 ? 206 ? 23 53 3 1 6VPS C 1 ? 31 ? Q9VSR3 176 ? 206 ? 23 53 4 1 6VPS D 1 ? 31 ? Q9VSR3 176 ? 206 ? 23 53 5 1 6VPS E 1 ? 31 ? Q9VSR3 176 ? 206 ? 23 53 6 1 6VPS F 1 ? 31 ? Q9VSR3 176 ? 206 ? 23 53 7 1 6VPS G 1 ? 31 ? Q9VSR3 176 ? 206 ? 23 53 8 1 6VPS H 1 ? 31 ? Q9VSR3 176 ? 206 ? 23 53 9 1 6VPS I 1 ? 31 ? Q9VSR3 176 ? 206 ? 23 53 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 20530 ? 1 MORE 33 ? 1 'SSA (A^2)' 13880 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ;Cryo-Electron Microscopy Negative-Stain Electron Microscopy SDD-AGE PAGE SDS-PAGE Antidody reactivity ThT binding Proteinase K resistance ; # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 3 ? AA5 ? 3 ? AA6 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU D 2 ? GLN D 16 ? LEU D 24 GLN D 38 AA1 2 LEU A 2 ? GLN A 16 ? LEU A 24 GLN A 38 AA1 3 LEU E 2 ? GLN E 16 ? LEU E 24 GLN E 38 AA2 1 GLN D 22 ? GLN D 29 ? GLN D 44 GLN D 51 AA2 2 GLN A 22 ? GLN A 29 ? GLN A 44 GLN A 51 AA2 3 GLN E 22 ? GLN E 29 ? GLN E 44 GLN E 51 AA3 1 LEU F 2 ? GLN F 16 ? LEU F 24 GLN F 38 AA3 2 LEU B 2 ? GLN B 16 ? LEU B 24 GLN B 38 AA3 3 LEU G 2 ? GLN G 16 ? LEU G 24 GLN G 38 AA4 1 GLN F 22 ? GLN F 29 ? GLN F 44 GLN F 51 AA4 2 GLN B 22 ? GLN B 29 ? GLN B 44 GLN B 51 AA4 3 GLN G 22 ? GLN G 29 ? GLN G 44 GLN G 51 AA5 1 LEU H 2 ? GLN H 16 ? LEU H 24 GLN H 38 AA5 2 LEU C 2 ? GLN C 16 ? LEU C 24 GLN C 38 AA5 3 HIS I 3 ? GLN I 16 ? HIS I 25 GLN I 38 AA6 1 GLN H 22 ? GLN H 29 ? GLN H 44 GLN H 51 AA6 2 GLN C 22 ? GLN C 29 ? GLN C 44 GLN C 51 AA6 3 GLN I 22 ? GLN I 29 ? GLN I 44 GLN I 51 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O GLN D 4 ? O GLN D 26 N GLN A 5 ? N GLN A 27 AA1 2 3 N GLN A 4 ? N GLN A 26 O GLN E 5 ? O GLN E 27 AA2 1 2 O LEU D 23 ? O LEU D 45 N GLN A 22 ? N GLN A 44 AA2 2 3 N LEU A 23 ? N LEU A 45 O GLN E 22 ? O GLN E 44 AA3 1 2 O GLN F 4 ? O GLN F 26 N GLN B 5 ? N GLN B 27 AA3 2 3 N GLN B 4 ? N GLN B 26 O GLN G 5 ? O GLN G 27 AA4 1 2 O LEU F 23 ? O LEU F 45 N GLN B 22 ? N GLN B 44 AA4 2 3 N LEU B 23 ? N LEU B 45 O GLN G 22 ? O GLN G 44 AA5 1 2 O GLN H 4 ? O GLN H 26 N GLN C 5 ? N GLN C 27 AA5 2 3 N GLN C 4 ? N GLN C 26 O GLN I 5 ? O GLN I 27 AA6 1 2 O LEU H 23 ? O LEU H 45 N GLN C 22 ? N GLN C 44 AA6 2 3 N LEU C 23 ? N LEU C 45 O GLN I 22 ? O GLN I 44 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 36 ? A 59.30 71.81 2 1 HIS A 36 ? B 53.92 75.61 3 1 HIS A 39 ? ? 69.78 69.39 4 1 HIS B 36 ? A 59.40 71.04 5 1 HIS B 36 ? B 54.25 74.64 6 1 HIS B 39 ? ? 69.66 70.20 7 1 HIS C 36 ? A 59.60 71.62 8 1 HIS C 36 ? B 54.04 75.50 9 1 HIS C 39 ? ? 69.70 69.01 10 1 HIS D 36 ? A 59.05 70.87 11 1 HIS D 36 ? B 53.80 74.47 12 1 HIS D 39 ? ? 66.66 72.28 13 1 HIS E 36 ? A 58.59 71.91 14 1 HIS E 36 ? B 53.28 75.65 15 1 HIS E 39 ? ? 67.61 69.85 16 1 HIS F 36 ? A 59.95 71.00 17 1 HIS F 36 ? B 53.18 75.75 18 1 HIS F 39 ? ? 66.99 71.90 19 1 HIS G 36 ? A 59.26 71.55 20 1 HIS G 36 ? B 52.98 75.92 21 1 HIS G 39 ? ? 68.23 70.80 22 1 HIS H 36 ? A 59.15 70.85 23 1 HIS H 36 ? B 52.80 75.18 24 1 HIS H 39 ? ? 66.94 71.66 25 1 HIS I 36 ? A 58.95 71.73 26 1 HIS I 36 ? B 52.77 76.06 27 1 HIS I 39 ? ? 67.30 71.24 # _pdbx_helical_symmetry.entry_id 6VPS _pdbx_helical_symmetry.number_of_operations 9 _pdbx_helical_symmetry.rotation_per_n_subunits -1.55 _pdbx_helical_symmetry.rise_per_n_subunits 4.75 _pdbx_helical_symmetry.n_subunits_divisor 1 _pdbx_helical_symmetry.dyad_axis no _pdbx_helical_symmetry.circular_symmetry 3 # _em_3d_fitting.entry_id 6VPS _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 6VPS _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 19509 _em_3d_reconstruction.resolution 2.6 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.25 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'amyloid core of Drosophila Orb2' _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 6VPS _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.citation_id ? _em_sample_support.details unspecified _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? _em_sample_support.id 1 _em_sample_support.method ? _em_sample_support.specimen_id 1 # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 6VPS _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6VPS _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.reconstruction_method HELICAL _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal GLN N N N N 1 GLN CA C N S 2 GLN C C N N 3 GLN O O N N 4 GLN CB C N N 5 GLN CG C N N 6 GLN CD C N N 7 GLN OE1 O N N 8 GLN NE2 N N N 9 GLN OXT O N N 10 GLN H H N N 11 GLN H2 H N N 12 GLN HA H N N 13 GLN HB2 H N N 14 GLN HB3 H N N 15 GLN HG2 H N N 16 GLN HG3 H N N 17 GLN HE21 H N N 18 GLN HE22 H N N 19 GLN HXT H N N 20 HIS N N N N 21 HIS CA C N S 22 HIS C C N N 23 HIS O O N N 24 HIS CB C N N 25 HIS CG C Y N 26 HIS ND1 N Y N 27 HIS CD2 C Y N 28 HIS CE1 C Y N 29 HIS NE2 N Y N 30 HIS OXT O N N 31 HIS H H N N 32 HIS H2 H N N 33 HIS HA H N N 34 HIS HB2 H N N 35 HIS HB3 H N N 36 HIS HD1 H N N 37 HIS HD2 H N N 38 HIS HE1 H N N 39 HIS HE2 H N N 40 HIS HXT H N N 41 LEU N N N N 42 LEU CA C N S 43 LEU C C N N 44 LEU O O N N 45 LEU CB C N N 46 LEU CG C N N 47 LEU CD1 C N N 48 LEU CD2 C N N 49 LEU OXT O N N 50 LEU H H N N 51 LEU H2 H N N 52 LEU HA H N N 53 LEU HB2 H N N 54 LEU HB3 H N N 55 LEU HG H N N 56 LEU HD11 H N N 57 LEU HD12 H N N 58 LEU HD13 H N N 59 LEU HD21 H N N 60 LEU HD22 H N N 61 LEU HD23 H N N 62 LEU HXT H N N 63 SER N N N N 64 SER CA C N S 65 SER C C N N 66 SER O O N N 67 SER CB C N N 68 SER OG O N N 69 SER OXT O N N 70 SER H H N N 71 SER H2 H N N 72 SER HA H N N 73 SER HB2 H N N 74 SER HB3 H N N 75 SER HG H N N 76 SER HXT H N N 77 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLN N CA sing N N 1 GLN N H sing N N 2 GLN N H2 sing N N 3 GLN CA C sing N N 4 GLN CA CB sing N N 5 GLN CA HA sing N N 6 GLN C O doub N N 7 GLN C OXT sing N N 8 GLN CB CG sing N N 9 GLN CB HB2 sing N N 10 GLN CB HB3 sing N N 11 GLN CG CD sing N N 12 GLN CG HG2 sing N N 13 GLN CG HG3 sing N N 14 GLN CD OE1 doub N N 15 GLN CD NE2 sing N N 16 GLN NE2 HE21 sing N N 17 GLN NE2 HE22 sing N N 18 GLN OXT HXT sing N N 19 HIS N CA sing N N 20 HIS N H sing N N 21 HIS N H2 sing N N 22 HIS CA C sing N N 23 HIS CA CB sing N N 24 HIS CA HA sing N N 25 HIS C O doub N N 26 HIS C OXT sing N N 27 HIS CB CG sing N N 28 HIS CB HB2 sing N N 29 HIS CB HB3 sing N N 30 HIS CG ND1 sing Y N 31 HIS CG CD2 doub Y N 32 HIS ND1 CE1 doub Y N 33 HIS ND1 HD1 sing N N 34 HIS CD2 NE2 sing Y N 35 HIS CD2 HD2 sing N N 36 HIS CE1 NE2 sing Y N 37 HIS CE1 HE1 sing N N 38 HIS NE2 HE2 sing N N 39 HIS OXT HXT sing N N 40 LEU N CA sing N N 41 LEU N H sing N N 42 LEU N H2 sing N N 43 LEU CA C sing N N 44 LEU CA CB sing N N 45 LEU CA HA sing N N 46 LEU C O doub N N 47 LEU C OXT sing N N 48 LEU CB CG sing N N 49 LEU CB HB2 sing N N 50 LEU CB HB3 sing N N 51 LEU CG CD1 sing N N 52 LEU CG CD2 sing N N 53 LEU CG HG sing N N 54 LEU CD1 HD11 sing N N 55 LEU CD1 HD12 sing N N 56 LEU CD1 HD13 sing N N 57 LEU CD2 HD21 sing N N 58 LEU CD2 HD22 sing N N 59 LEU CD2 HD23 sing N N 60 LEU OXT HXT sing N N 61 SER N CA sing N N 62 SER N H sing N N 63 SER N H2 sing N N 64 SER CA C sing N N 65 SER CA CB sing N N 66 SER CA HA sing N N 67 SER C O doub N N 68 SER C OXT sing N N 69 SER CB OG sing N N 70 SER CB HB2 sing N N 71 SER CB HB3 sing N N 72 SER OG HG sing N N 73 SER OXT HXT sing N N 74 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 7227 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Drosophila melanogaster' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue head # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.angular_rotation_per_subunit -1.55 _em_helical_entity.axial_rise_per_subunit 4.75 _em_helical_entity.axial_symmetry C3 _em_helical_entity.details ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 63 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 ? 1 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _atom_sites.entry_id 6VPS _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 C 2.310 20.844 1.020 10.208 1.589 0.569 N 12.222 0.006 3.135 9.893 2.014 28.997 O 3.049 13.277 2.287 5.701 1.546 0.324 # loop_