HEADER IMMUNE SYSTEM 04-FEB-20 6VPY TITLE I33M (I3.2 MUTANT FROM CH103 LINEAGE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: I33M LIGHT CHAIN; COMPND 3 CHAIN: B, L; COMPND 4 FRAGMENT: FAB,FAB; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: I33M HEAVY CHAIN; COMPND 8 CHAIN: A, H; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: HEK293T; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PVRC-8400; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 17 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS FAB FRAGMENT, HIV-1, ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.FERA,J.ZHOU REVDAT 4 11-OCT-23 6VPY 1 REMARK REVDAT 3 09-SEP-20 6VPY 1 REMARK REVDAT 2 19-AUG-20 6VPY 1 JRNL REVDAT 1 15-JUL-20 6VPY 0 JRNL AUTH J.O.ZHOU,H.A.ZAIDI,T.TON,D.FERA JRNL TITL THE EFFECTS OF FRAMEWORK MUTATIONS AT THE VARIABLE DOMAIN JRNL TITL 2 INTERFACE ON ANTIBODY AFFINITY MATURATION IN AN HIV-1 JRNL TITL 3 BROADLY NEUTRALIZING ANTIBODY LINEAGE. JRNL REF FRONT IMMUNOL V. 11 1529 2020 JRNL REFN ESSN 1664-3224 JRNL PMID 32765530 JRNL DOI 10.3389/FIMMU.2020.01529 REMARK 2 REMARK 2 RESOLUTION. 2.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 42571 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.730 REMARK 3 FREE R VALUE TEST SET COUNT : 2014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.6500 - 5.6652 1.00 2979 157 0.2026 0.2221 REMARK 3 2 5.6652 - 4.4977 0.99 2925 131 0.1628 0.2100 REMARK 3 3 4.4977 - 3.9295 0.97 2835 139 0.1530 0.1834 REMARK 3 4 3.9295 - 3.5703 0.99 2909 142 0.1661 0.1997 REMARK 3 5 3.5703 - 3.3145 1.00 2896 161 0.1763 0.2270 REMARK 3 6 3.3145 - 3.1191 1.00 2902 158 0.1826 0.2486 REMARK 3 7 3.1191 - 2.9629 1.00 2918 144 0.1995 0.2352 REMARK 3 8 2.9629 - 2.8340 1.00 2900 161 0.2045 0.2438 REMARK 3 9 2.8340 - 2.7249 1.00 2912 138 0.2108 0.2410 REMARK 3 10 2.7249 - 2.6309 1.00 2896 140 0.2158 0.2493 REMARK 3 11 2.6309 - 2.5486 1.00 2903 159 0.2247 0.2768 REMARK 3 12 2.5486 - 2.4758 1.00 2931 110 0.2390 0.2775 REMARK 3 13 2.4758 - 2.4106 1.00 2923 143 0.2491 0.3005 REMARK 3 14 2.4106 - 2.3600 0.94 2728 131 0.2552 0.2728 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6555 REMARK 3 ANGLE : 1.142 8955 REMARK 3 CHIRALITY : 0.048 1033 REMARK 3 PLANARITY : 0.006 1145 REMARK 3 DIHEDRAL : 13.216 2285 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 65.7330 8.7101 28.7986 REMARK 3 T TENSOR REMARK 3 T11: 0.4024 T22: 0.3280 REMARK 3 T33: 0.3686 T12: 0.0005 REMARK 3 T13: 0.0131 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 0.2776 L22: 0.0600 REMARK 3 L33: 0.3146 L12: 0.0466 REMARK 3 L13: 0.3740 L23: 0.0687 REMARK 3 S TENSOR REMARK 3 S11: -0.1031 S12: -0.0036 S13: 0.0496 REMARK 3 S21: -0.0103 S22: 0.0217 S23: 0.0399 REMARK 3 S31: -0.1036 S32: -0.0039 S33: 0.1003 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN H REMARK 3 ATOM PAIRS NUMBER : 1894 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN B REMARK 3 SELECTION : CHAIN L REMARK 3 ATOM PAIRS NUMBER : 1851 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VPY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1000246805. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97927 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(220) SIDE REMARK 200 BOUNCE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42614 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.352 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.97400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.17 REMARK 200 STARTING MODEL: PDB ENTRY 4QHL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M AMMONIUM SULFATE, 100 MM HEPES, REMARK 280 PH 7.23, 5% PEG400, PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.93867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.96933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.45400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 17.48467 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 87.42333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 1 REMARK 465 THR B 210 REMARK 465 GLU B 211 REMARK 465 CYS B 212 REMARK 465 SER B 213 REMARK 465 SER A 127 REMARK 465 SER A 128 REMARK 465 LYS A 129 REMARK 465 SER A 130 REMARK 465 THR A 131 REMARK 465 SER A 132 REMARK 465 SER A 215 REMARK 465 CYS A 216 REMARK 465 ASP A 217 REMARK 465 LYS A 218 REMARK 465 HIS A 219 REMARK 465 HIS A 220 REMARK 465 HIS A 221 REMARK 465 HIS A 222 REMARK 465 HIS A 223 REMARK 465 HIS A 224 REMARK 465 SER H 128 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 HIS H 219 REMARK 465 HIS H 220 REMARK 465 HIS H 221 REMARK 465 HIS H 222 REMARK 465 HIS H 223 REMARK 465 HIS H 224 REMARK 465 THR L 210 REMARK 465 GLU L 211 REMARK 465 CYS L 212 REMARK 465 SER L 213 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR B 2 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 3 CG CD OE1 OE2 REMARK 470 LYS B 130 CG CD CE NZ REMARK 470 SER B 154 OG REMARK 470 GLN A 1 CG CD OE1 NE2 REMARK 470 LYS A 214 CG CD CE NZ REMARK 470 LEU H 100 CG CD1 CD2 REMARK 470 TYR L 2 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU L 3 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN H 99 ND2 ASN H 100B 2.13 REMARK 500 O GLU L 199 O HOH L 401 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 51 -49.99 69.68 REMARK 500 SER B 76 123.28 47.09 REMARK 500 THR B 95A -58.42 64.30 REMARK 500 ALA B 128 30.03 -92.51 REMARK 500 ASN B 129 -90.26 63.28 REMARK 500 LYS B 130 160.35 -23.57 REMARK 500 ASP B 152 -93.10 58.80 REMARK 500 GLU B 199 -105.86 58.50 REMARK 500 SER A 15 -13.61 80.22 REMARK 500 ASN A 102 118.51 53.26 REMARK 500 ASP A 144 65.43 61.17 REMARK 500 SER A 188 -135.79 -73.30 REMARK 500 LEU A 189 117.28 55.18 REMARK 500 GLN A 192 125.73 71.99 REMARK 500 SER H 15 -12.65 79.42 REMARK 500 GLN H 99 118.67 -21.12 REMARK 500 ASP H 144 66.08 60.82 REMARK 500 GLU L 3 -37.30 -147.27 REMARK 500 LEU L 4 111.60 60.79 REMARK 500 ASP L 51 -50.69 71.64 REMARK 500 THR L 95A -61.30 63.35 REMARK 500 ASP L 152 -89.47 54.55 REMARK 500 GLU L 199 -105.19 55.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 302 DBREF 6VPY B 1 104 PDB 6VPY 6VPY 1 104 DBREF 6VPY B 105 213 UNP Q8N355 Q8N355_HUMAN 126 234 DBREF 6VPY A 1 102 PDB 6VPY 6VPY 1 102 DBREF 6VPY A 103 218 UNP Q6GMX6 Q6GMX6_HUMAN 125 240 DBREF 6VPY H 1 102 PDB 6VPY 6VPY 1 102 DBREF 6VPY H 103 218 UNP Q6GMX6 Q6GMX6_HUMAN 125 240 DBREF 6VPY L 1 104 PDB 6VPY 6VPY 1 104 DBREF 6VPY L 105 213 UNP Q8N355 Q8N355_HUMAN 126 234 SEQADV 6VPY ALA A 112 UNP Q6GMX6 SER 134 CONFLICT SEQADV 6VPY ARG A 210 UNP Q6GMX6 LYS 232 CONFLICT SEQADV 6VPY HIS A 219 UNP Q6GMX6 EXPRESSION TAG SEQADV 6VPY HIS A 220 UNP Q6GMX6 EXPRESSION TAG SEQADV 6VPY HIS A 221 UNP Q6GMX6 EXPRESSION TAG SEQADV 6VPY HIS A 222 UNP Q6GMX6 EXPRESSION TAG SEQADV 6VPY HIS A 223 UNP Q6GMX6 EXPRESSION TAG SEQADV 6VPY HIS A 224 UNP Q6GMX6 EXPRESSION TAG SEQADV 6VPY ALA H 112 UNP Q6GMX6 SER 134 CONFLICT SEQADV 6VPY ARG H 210 UNP Q6GMX6 LYS 232 CONFLICT SEQADV 6VPY HIS H 219 UNP Q6GMX6 EXPRESSION TAG SEQADV 6VPY HIS H 220 UNP Q6GMX6 EXPRESSION TAG SEQADV 6VPY HIS H 221 UNP Q6GMX6 EXPRESSION TAG SEQADV 6VPY HIS H 222 UNP Q6GMX6 EXPRESSION TAG SEQADV 6VPY HIS H 223 UNP Q6GMX6 EXPRESSION TAG SEQADV 6VPY HIS H 224 UNP Q6GMX6 EXPRESSION TAG SEQRES 1 B 213 SER TYR GLU LEU THR GLN PRO PRO SER VAL SER VAL SER SEQRES 2 B 213 PRO GLY GLN THR ALA SER ILE THR CYS SER GLY ASP LYS SEQRES 3 B 213 LEU GLY ASP LYS ASN ALA CYS TRP TYR GLN VAL LYS PRO SEQRES 4 B 213 GLY GLN SER PRO VAL VAL VAL ILE TYR GLN ASP SER LYS SEQRES 5 B 213 ARG PRO SER GLY ILE PRO GLU ARG PHE SER GLY SER ASN SEQRES 6 B 213 SER GLY ASN THR ALA THR LEU THR ILE SER GLY THR GLN SEQRES 7 B 213 ALA MET ASP GLU ALA ASP TYR TYR CYS GLN ALA TRP ASP SEQRES 8 B 213 SER PHE SER THR PHE VAL PHE GLY THR GLY THR LYS VAL SEQRES 9 B 213 THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SER VAL THR SEQRES 10 B 213 LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA ASN LYS SEQRES 11 B 213 ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR PRO GLY SEQRES 12 B 213 ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER PRO VAL SEQRES 13 B 213 LYS ALA GLY VAL GLU THR THR THR PRO SER LYS GLN SER SEQRES 14 B 213 ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER LEU THR SEQRES 15 B 213 PRO GLU GLN TRP LYS SER HIS ARG SER TYR SER CYS GLN SEQRES 16 B 213 VAL THR HIS GLU GLY SER THR VAL GLU LYS THR VAL ALA SEQRES 17 B 213 PRO THR GLU CYS SER SEQRES 1 A 232 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 A 232 SER SER GLU THR LEU SER LEU THR CYS THR VAL SER GLY SEQRES 3 A 232 GLY SER MET GLY GLY TYR TYR TRP SER TRP LEU ARG GLN SEQRES 4 A 232 SER PRO VAL LYS GLY LEU GLU TRP ILE GLY TYR ILE PHE SEQRES 5 A 232 HIS THR GLY HIS THR ASN TYR ASN PRO SER LEU GLU SER SEQRES 6 A 232 ARG VAL THR VAL SER VAL ASP THR SER GLU ASN GLN PHE SEQRES 7 A 232 SER LEU ARG LEU ARG SER VAL THR ALA ALA ASP THR ALA SEQRES 8 A 232 VAL TYR TYR CYS ALA SER LEU PRO ARG GLY GLN LEU VAL SEQRES 9 A 232 ASN ALA PHE PHE ASP ASN TRP GLY GLN GLY THR LEU VAL SEQRES 10 A 232 THR VAL ALA SER ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 11 A 232 PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR SEQRES 12 A 232 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 13 A 232 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 A 232 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 A 232 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 16 A 232 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 17 A 232 LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO SEQRES 18 A 232 LYS SER CYS ASP LYS HIS HIS HIS HIS HIS HIS SEQRES 1 H 232 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 232 SER SER GLU THR LEU SER LEU THR CYS THR VAL SER GLY SEQRES 3 H 232 GLY SER MET GLY GLY TYR TYR TRP SER TRP LEU ARG GLN SEQRES 4 H 232 SER PRO VAL LYS GLY LEU GLU TRP ILE GLY TYR ILE PHE SEQRES 5 H 232 HIS THR GLY HIS THR ASN TYR ASN PRO SER LEU GLU SER SEQRES 6 H 232 ARG VAL THR VAL SER VAL ASP THR SER GLU ASN GLN PHE SEQRES 7 H 232 SER LEU ARG LEU ARG SER VAL THR ALA ALA ASP THR ALA SEQRES 8 H 232 VAL TYR TYR CYS ALA SER LEU PRO ARG GLY GLN LEU VAL SEQRES 9 H 232 ASN ALA PHE PHE ASP ASN TRP GLY GLN GLY THR LEU VAL SEQRES 10 H 232 THR VAL ALA SER ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 11 H 232 PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR SEQRES 12 H 232 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 13 H 232 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 H 232 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 H 232 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 16 H 232 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 17 H 232 LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO SEQRES 18 H 232 LYS SER CYS ASP LYS HIS HIS HIS HIS HIS HIS SEQRES 1 L 213 SER TYR GLU LEU THR GLN PRO PRO SER VAL SER VAL SER SEQRES 2 L 213 PRO GLY GLN THR ALA SER ILE THR CYS SER GLY ASP LYS SEQRES 3 L 213 LEU GLY ASP LYS ASN ALA CYS TRP TYR GLN VAL LYS PRO SEQRES 4 L 213 GLY GLN SER PRO VAL VAL VAL ILE TYR GLN ASP SER LYS SEQRES 5 L 213 ARG PRO SER GLY ILE PRO GLU ARG PHE SER GLY SER ASN SEQRES 6 L 213 SER GLY ASN THR ALA THR LEU THR ILE SER GLY THR GLN SEQRES 7 L 213 ALA MET ASP GLU ALA ASP TYR TYR CYS GLN ALA TRP ASP SEQRES 8 L 213 SER PHE SER THR PHE VAL PHE GLY THR GLY THR LYS VAL SEQRES 9 L 213 THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SER VAL THR SEQRES 10 L 213 LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA ASN LYS SEQRES 11 L 213 ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR PRO GLY SEQRES 12 L 213 ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER PRO VAL SEQRES 13 L 213 LYS ALA GLY VAL GLU THR THR THR PRO SER LYS GLN SER SEQRES 14 L 213 ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER LEU THR SEQRES 15 L 213 PRO GLU GLN TRP LYS SER HIS ARG SER TYR SER CYS GLN SEQRES 16 L 213 VAL THR HIS GLU GLY SER THR VAL GLU LYS THR VAL ALA SEQRES 17 L 213 PRO THR GLU CYS SER HET CL B 301 1 HET GOL L 301 6 HET GOL L 302 6 HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 CL CL 1- FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 HOH *303(H2 O) HELIX 1 AA1 LYS B 27 LYS B 31 5 5 HELIX 2 AA2 GLN B 79 GLU B 83 5 5 HELIX 3 AA3 SER B 122 ALA B 128 1 7 HELIX 4 AA4 THR B 182 HIS B 189 1 8 HELIX 5 AA5 LEU A 63 SER A 65 5 3 HELIX 6 AA6 THR A 83 THR A 87 5 5 HELIX 7 AA7 GLN A 99 ALA A 100C 5 5 HELIX 8 AA8 SER A 156 ALA A 158 5 3 HELIX 9 AA9 LYS A 201 ASN A 204 5 4 HELIX 10 AB1 THR H 83 THR H 87 5 5 HELIX 11 AB2 GLN H 99 ALA H 100C 5 5 HELIX 12 AB3 SER H 156 ALA H 158 5 3 HELIX 13 AB4 SER H 187 LEU H 189 5 3 HELIX 14 AB5 LYS H 201 ASN H 204 5 4 HELIX 15 AB6 LYS L 27 LYS L 31 5 5 HELIX 16 AB7 GLN L 79 GLU L 83 5 5 HELIX 17 AB8 SER L 122 ALA L 128 1 7 HELIX 18 AB9 THR L 182 HIS L 189 1 8 SHEET 1 AA1 5 SER B 9 VAL B 13 0 SHEET 2 AA1 5 THR B 102 VAL B 106 1 O THR B 105 N VAL B 13 SHEET 3 AA1 5 ALA B 84 ASP B 92 -1 N ALA B 84 O VAL B 104 SHEET 4 AA1 5 CYS B 34 VAL B 38 -1 N VAL B 38 O ASP B 85 SHEET 5 AA1 5 VAL B 45 ILE B 48 -1 O ILE B 48 N TRP B 35 SHEET 1 AA2 4 SER B 9 VAL B 13 0 SHEET 2 AA2 4 THR B 102 VAL B 106 1 O THR B 105 N VAL B 13 SHEET 3 AA2 4 ALA B 84 ASP B 92 -1 N ALA B 84 O VAL B 104 SHEET 4 AA2 4 THR B 95A PHE B 98 -1 O VAL B 97 N ALA B 90 SHEET 1 AA3 3 SER B 20 SER B 24 0 SHEET 2 AA3 3 THR B 70 THR B 74 -1 O LEU B 73 N ILE B 21 SHEET 3 AA3 3 SER B 63 SER B 67 -1 N SER B 65 O THR B 72 SHEET 1 AA4 4 SER B 115 PHE B 119 0 SHEET 2 AA4 4 ALA B 131 PHE B 140 -1 O LEU B 136 N THR B 117 SHEET 3 AA4 4 TYR B 173 LEU B 181 -1 O ALA B 175 N ILE B 137 SHEET 4 AA4 4 VAL B 160 THR B 162 -1 N GLU B 161 O TYR B 178 SHEET 1 AA5 4 SER B 115 PHE B 119 0 SHEET 2 AA5 4 ALA B 131 PHE B 140 -1 O LEU B 136 N THR B 117 SHEET 3 AA5 4 TYR B 173 LEU B 181 -1 O ALA B 175 N ILE B 137 SHEET 4 AA5 4 SER B 166 LYS B 167 -1 N SER B 166 O ALA B 174 SHEET 1 AA6 4 SER B 154 PRO B 155 0 SHEET 2 AA6 4 THR B 146 ALA B 151 -1 N ALA B 151 O SER B 154 SHEET 3 AA6 4 TYR B 192 HIS B 198 -1 O GLN B 195 N ALA B 148 SHEET 4 AA6 4 SER B 201 VAL B 207 -1 O LYS B 205 N CYS B 194 SHEET 1 AA7 4 GLN A 3 SER A 7 0 SHEET 2 AA7 4 LEU A 18 SER A 25 -1 O SER A 25 N GLN A 3 SHEET 3 AA7 4 GLN A 77 LEU A 82 -1 O LEU A 82 N LEU A 18 SHEET 4 AA7 4 VAL A 67 ASP A 72 -1 N SER A 70 O SER A 79 SHEET 1 AA8 6 LEU A 11 LYS A 13 0 SHEET 2 AA8 6 THR A 107 ALA A 112 1 O THR A 110 N VAL A 12 SHEET 3 AA8 6 ALA A 88 PRO A 96 -1 N TYR A 90 O THR A 107 SHEET 4 AA8 6 TYR A 32 SER A 40 -1 N LEU A 37 O TYR A 91 SHEET 5 AA8 6 GLY A 44 ILE A 51 -1 O GLY A 49 N TRP A 36 SHEET 6 AA8 6 THR A 57 TYR A 59 -1 O ASN A 58 N TYR A 50 SHEET 1 AA9 4 LEU A 11 LYS A 13 0 SHEET 2 AA9 4 THR A 107 ALA A 112 1 O THR A 110 N VAL A 12 SHEET 3 AA9 4 ALA A 88 PRO A 96 -1 N TYR A 90 O THR A 107 SHEET 4 AA9 4 ASP A 101 TRP A 103 -1 O ASN A 102 N SER A 94 SHEET 1 AB1 4 SER A 120 LEU A 124 0 SHEET 2 AB1 4 THR A 135 TYR A 145 -1 O GLY A 139 N LEU A 124 SHEET 3 AB1 4 TYR A 176 PRO A 185 -1 O VAL A 182 N LEU A 138 SHEET 4 AB1 4 VAL A 163 THR A 165 -1 N HIS A 164 O VAL A 181 SHEET 1 AB2 4 SER A 120 LEU A 124 0 SHEET 2 AB2 4 THR A 135 TYR A 145 -1 O GLY A 139 N LEU A 124 SHEET 3 AB2 4 TYR A 176 PRO A 185 -1 O VAL A 182 N LEU A 138 SHEET 4 AB2 4 VAL A 169 LEU A 170 -1 N VAL A 169 O SER A 177 SHEET 1 AB3 3 THR A 151 TRP A 154 0 SHEET 2 AB3 3 TYR A 194 HIS A 200 -1 O ASN A 197 N SER A 153 SHEET 3 AB3 3 THR A 205 VAL A 211 -1 O VAL A 207 N VAL A 198 SHEET 1 AB4 4 VAL H 2 SER H 7 0 SHEET 2 AB4 4 LEU H 18 GLY H 26 -1 O SER H 25 N GLN H 3 SHEET 3 AB4 4 GLN H 77 LEU H 82 -1 O PHE H 78 N CYS H 22 SHEET 4 AB4 4 VAL H 67 ASP H 72 -1 N ASP H 72 O GLN H 77 SHEET 1 AB5 6 LEU H 11 LYS H 13 0 SHEET 2 AB5 6 THR H 107 ALA H 112 1 O THR H 110 N VAL H 12 SHEET 3 AB5 6 ALA H 88 PRO H 96 -1 N ALA H 88 O VAL H 109 SHEET 4 AB5 6 TYR H 32 SER H 40 -1 N TYR H 33 O LEU H 95 SHEET 5 AB5 6 GLY H 44 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AB5 6 THR H 57 TYR H 59 -1 O ASN H 58 N TYR H 50 SHEET 1 AB6 4 LEU H 11 LYS H 13 0 SHEET 2 AB6 4 THR H 107 ALA H 112 1 O THR H 110 N VAL H 12 SHEET 3 AB6 4 ALA H 88 PRO H 96 -1 N ALA H 88 O VAL H 109 SHEET 4 AB6 4 ASN H 102 TRP H 103 -1 O ASN H 102 N SER H 94 SHEET 1 AB7 4 SER H 120 LEU H 124 0 SHEET 2 AB7 4 THR H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AB7 4 TYR H 176 PRO H 185 -1 O VAL H 182 N LEU H 138 SHEET 4 AB7 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AB8 4 SER H 120 LEU H 124 0 SHEET 2 AB8 4 THR H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AB8 4 TYR H 176 PRO H 185 -1 O VAL H 182 N LEU H 138 SHEET 4 AB8 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AB9 3 THR H 151 TRP H 154 0 SHEET 2 AB9 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AB9 3 THR H 205 ARG H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AC1 5 SER L 9 VAL L 13 0 SHEET 2 AC1 5 THR L 102 VAL L 106 1 O THR L 105 N VAL L 13 SHEET 3 AC1 5 ALA L 84 ASP L 92 -1 N ALA L 84 O VAL L 104 SHEET 4 AC1 5 CYS L 34 VAL L 38 -1 N VAL L 38 O ASP L 85 SHEET 5 AC1 5 VAL L 45 ILE L 48 -1 O ILE L 48 N TRP L 35 SHEET 1 AC2 4 SER L 9 VAL L 13 0 SHEET 2 AC2 4 THR L 102 VAL L 106 1 O THR L 105 N VAL L 13 SHEET 3 AC2 4 ALA L 84 ASP L 92 -1 N ALA L 84 O VAL L 104 SHEET 4 AC2 4 THR L 95A PHE L 98 -1 O THR L 95A N ASP L 92 SHEET 1 AC3 3 ALA L 19 SER L 24 0 SHEET 2 AC3 3 THR L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 3 AC3 3 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AC4 4 SER L 115 PHE L 119 0 SHEET 2 AC4 4 ALA L 131 PHE L 140 -1 O SER L 138 N SER L 115 SHEET 3 AC4 4 TYR L 173 LEU L 181 -1 O ALA L 175 N ILE L 137 SHEET 4 AC4 4 VAL L 160 THR L 162 -1 N GLU L 161 O TYR L 178 SHEET 1 AC5 4 SER L 115 PHE L 119 0 SHEET 2 AC5 4 ALA L 131 PHE L 140 -1 O SER L 138 N SER L 115 SHEET 3 AC5 4 TYR L 173 LEU L 181 -1 O ALA L 175 N ILE L 137 SHEET 4 AC5 4 SER L 166 LYS L 167 -1 N SER L 166 O ALA L 174 SHEET 1 AC6 4 SER L 154 VAL L 156 0 SHEET 2 AC6 4 THR L 146 ALA L 151 -1 N ALA L 151 O SER L 154 SHEET 3 AC6 4 TYR L 192 HIS L 198 -1 O GLN L 195 N ALA L 148 SHEET 4 AC6 4 SER L 201 VAL L 207 -1 O VAL L 203 N VAL L 196 SSBOND 1 CYS B 23 CYS B 88 1555 1555 2.05 SSBOND 2 CYS B 135 CYS B 194 1555 1555 2.04 SSBOND 3 CYS A 22 CYS A 92 1555 1555 2.09 SSBOND 4 CYS A 140 CYS A 196 1555 1555 2.04 SSBOND 5 CYS H 22 CYS H 92 1555 1555 2.08 SSBOND 6 CYS H 140 CYS H 196 1555 1555 2.05 SSBOND 7 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 8 CYS L 135 CYS L 194 1555 1555 2.05 CISPEP 1 TYR B 141 PRO B 142 0 4.34 CISPEP 2 PHE A 146 PRO A 147 0 -3.61 CISPEP 3 GLU A 148 PRO A 149 0 -1.03 CISPEP 4 PHE H 146 PRO H 147 0 -4.14 CISPEP 5 GLU H 148 PRO H 149 0 -0.70 CISPEP 6 TYR L 141 PRO L 142 0 2.24 SITE 1 AC1 2 TYR B 141 LYS H 201 SITE 1 AC2 6 TYR A 59 THR A 68 VAL A 69 GLN L 185 SITE 2 AC2 6 HIS L 189 TYR L 192 SITE 1 AC3 7 THR A 151 ASN A 199 LYS A 201 GLY L 108 SITE 2 AC3 7 GLN L 109 TYR L 141 LYS L 167 CRYST1 131.605 131.605 104.908 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007598 0.004387 0.000000 0.00000 SCALE2 0.000000 0.008774 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009532 0.00000