HEADER TRANSFERASE 05-FEB-20 6VQM TITLE CRYSTAL STRUCTURE ANALYSIS OF HUMAN ACK1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIVATED CDC42 KINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ACK-1,TYROSINE KINASE NON-RECEPTOR PROTEIN 2; COMPND 5 EC: 2.7.10.2,2.7.11.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TNK2, ACK1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS NON-RECEPTOR TYROSINE-PROTEIN AND SERINE/THREONINE-PROTEIN KINASE, KEYWDS 2 KINASE INHIBITOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.-S.SEO,S.DHE-PAGANON REVDAT 2 11-OCT-23 6VQM 1 REMARK REVDAT 1 10-FEB-21 6VQM 0 JRNL AUTH H.-S.SEO,S.DHE-PAGANON JRNL TITL CRYSTAL STRUCTURE ANALYSIS OF HUMAN ACK1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 90.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 11807 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.273 REMARK 3 R VALUE (WORKING SET) : 0.270 REMARK 3 FREE R VALUE : 0.330 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 626 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 878 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3740 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4116 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 73 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.31000 REMARK 3 B22 (A**2) : 0.82000 REMARK 3 B33 (A**2) : 7.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.28000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.577 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.556 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 62.686 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.888 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.832 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4296 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4034 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5841 ; 1.496 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9216 ; 1.216 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 530 ; 6.926 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 190 ;35.840 ;22.789 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 681 ;12.948 ;15.059 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;12.085 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 641 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4827 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 994 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 117 390 B 117 390 5294 0.060 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 117 A 207 REMARK 3 ORIGIN FOR THE GROUP (A): 14.506 1.507 -1.427 REMARK 3 T TENSOR REMARK 3 T11: 0.6543 T22: 0.5928 REMARK 3 T33: 0.0667 T12: 0.0250 REMARK 3 T13: -0.1171 T23: -0.0570 REMARK 3 L TENSOR REMARK 3 L11: 7.6206 L22: 3.5551 REMARK 3 L33: 4.3541 L12: -0.8734 REMARK 3 L13: -2.5210 L23: -0.4357 REMARK 3 S TENSOR REMARK 3 S11: 0.0145 S12: -0.1578 S13: -0.4072 REMARK 3 S21: 0.3374 S22: 0.0560 S23: -0.0342 REMARK 3 S31: -0.1122 S32: -0.1041 S33: -0.0705 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 208 A 390 REMARK 3 ORIGIN FOR THE GROUP (A): 17.636 -4.667 -25.233 REMARK 3 T TENSOR REMARK 3 T11: 0.5572 T22: 0.6428 REMARK 3 T33: 0.1479 T12: 0.0033 REMARK 3 T13: -0.0836 T23: -0.1547 REMARK 3 L TENSOR REMARK 3 L11: 6.4079 L22: 2.4245 REMARK 3 L33: 4.0634 L12: -1.4216 REMARK 3 L13: 1.1385 L23: 1.2842 REMARK 3 S TENSOR REMARK 3 S11: -0.0396 S12: 0.2933 S13: -0.4593 REMARK 3 S21: 0.0652 S22: 0.2850 S23: -0.3254 REMARK 3 S31: 0.1505 S32: 0.4089 S33: -0.2454 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 117 B 207 REMARK 3 ORIGIN FOR THE GROUP (A): -23.903 10.421 -13.042 REMARK 3 T TENSOR REMARK 3 T11: 0.6202 T22: 0.6341 REMARK 3 T33: 0.2048 T12: -0.0528 REMARK 3 T13: -0.0911 T23: 0.0857 REMARK 3 L TENSOR REMARK 3 L11: 3.2554 L22: 3.9131 REMARK 3 L33: 6.5502 L12: -0.0185 REMARK 3 L13: -0.0276 L23: -0.4216 REMARK 3 S TENSOR REMARK 3 S11: -0.1724 S12: -0.5394 S13: -0.3080 REMARK 3 S21: 0.4195 S22: 0.0077 S23: 0.4525 REMARK 3 S31: -0.0187 S32: -0.2447 S33: 0.1646 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 208 B 392 REMARK 3 ORIGIN FOR THE GROUP (A): -13.494 10.034 -35.627 REMARK 3 T TENSOR REMARK 3 T11: 0.5473 T22: 0.5647 REMARK 3 T33: 0.0668 T12: -0.1207 REMARK 3 T13: -0.0963 T23: 0.0605 REMARK 3 L TENSOR REMARK 3 L11: 4.5280 L22: 3.8031 REMARK 3 L33: 3.4621 L12: -0.6646 REMARK 3 L13: 1.0395 L23: 0.7029 REMARK 3 S TENSOR REMARK 3 S11: -0.0215 S12: 0.0399 S13: 0.2954 REMARK 3 S21: -0.0480 S22: -0.1573 S23: 0.2744 REMARK 3 S31: 0.0093 S32: 0.0171 S33: 0.1789 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6VQM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1000246460. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100.000 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54179 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12433 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.870 REMARK 200 RESOLUTION RANGE LOW (A) : 90.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.43600 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1U46 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, VAPOR DIFFUSION, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.22650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 21.22650 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 107 REMARK 465 SER A 108 REMARK 465 ALA A 109 REMARK 465 GLY A 110 REMARK 465 GLU A 111 REMARK 465 GLY A 112 REMARK 465 PRO A 113 REMARK 465 LEU A 114 REMARK 465 GLN A 115 REMARK 465 SER A 116 REMARK 465 LYS A 161 REMARK 465 PRO A 162 REMARK 465 ASP A 163 REMARK 465 VAL A 164 REMARK 465 LEU A 165 REMARK 465 SER A 166 REMARK 465 GLN A 167 REMARK 465 THR A 391 REMARK 465 ASP A 392 REMARK 465 MET A 393 REMARK 465 ARG A 394 REMARK 465 ALA A 395 REMARK 465 GLY B 107 REMARK 465 SER B 108 REMARK 465 ALA B 109 REMARK 465 GLY B 110 REMARK 465 GLU B 111 REMARK 465 GLY B 112 REMARK 465 PRO B 113 REMARK 465 LEU B 114 REMARK 465 GLN B 115 REMARK 465 SER B 116 REMARK 465 LYS B 161 REMARK 465 PRO B 162 REMARK 465 ASP B 163 REMARK 465 VAL B 164 REMARK 465 LEU B 165 REMARK 465 SER B 166 REMARK 465 GLN B 167 REMARK 465 PRO B 168 REMARK 465 GLU B 169 REMARK 465 MET B 393 REMARK 465 ARG B 394 REMARK 465 ALA B 395 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 151 CG CD CE NZ REMARK 470 ASP A 172 CG OD1 OD2 REMARK 470 ASP A 173 CG OD1 OD2 REMARK 470 ARG A 176 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 191 CD NE CZ NH1 NH2 REMARK 470 LYS A 219 CG CD CE NZ REMARK 470 HIS A 223 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 225 CD1 CD2 REMARK 470 ARG A 231 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 246 CD CE NZ REMARK 470 ARG A 263 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 277 CD1 CD2 REMARK 470 GLN A 279 CG CD OE1 NE2 REMARK 470 ASN A 280 CG OD1 ND2 REMARK 470 GLN A 287 CG CD OE1 NE2 REMARK 470 ARG A 290 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 291 CD CE NZ REMARK 470 LYS A 303 CG CD CE NZ REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 342 NZ REMARK 470 ARG A 352 CD NE CZ NH1 NH2 REMARK 470 ILE A 360 CG1 CG2 CD1 REMARK 470 VAL A 363 CG1 CG2 REMARK 470 VAL A 365 CG1 CG2 REMARK 470 LYS A 371 CG CD CE NZ REMARK 470 ASP A 374 CG OD1 OD2 REMARK 470 ARG A 382 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 387 CG CD OE1 OE2 REMARK 470 GLN A 389 CG CD OE1 NE2 REMARK 470 LYS B 124 CG CD CE NZ REMARK 470 ASP B 125 CG OD1 OD2 REMARK 470 LEU B 129 CD1 CD2 REMARK 470 LYS B 131 NZ REMARK 470 ASP B 146 CG OD1 OD2 REMARK 470 LYS B 151 CG CD CE NZ REMARK 470 VAL B 157 CG1 CG2 REMARK 470 ARG B 216 CZ NH1 NH2 REMARK 470 LYS B 219 CE NZ REMARK 470 THR B 228 OG1 CG2 REMARK 470 GLU B 238 CG CD OE1 OE2 REMARK 470 LYS B 246 CE NZ REMARK 470 GLN B 279 CG CD OE1 NE2 REMARK 470 ASN B 280 CG OD1 ND2 REMARK 470 ASP B 281 CG OD1 OD2 REMARK 470 GLN B 287 CD OE1 NE2 REMARK 470 LYS B 291 CG CD CE NZ REMARK 470 LYS B 345 CD CE NZ REMARK 470 ASP B 359 CG OD1 OD2 REMARK 470 ARG B 382 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 129 -139.85 -122.12 REMARK 500 ASP A 252 49.81 -160.43 REMARK 500 HIS A 289 -35.00 90.36 REMARK 500 TRP A 368 39.23 -98.80 REMARK 500 LEU B 129 -143.05 -120.69 REMARK 500 ASP B 252 51.77 -166.36 REMARK 500 ASP B 270 78.79 60.12 REMARK 500 PHE B 271 43.61 -101.99 REMARK 500 HIS B 289 22.46 -73.58 REMARK 500 TRP B 368 36.14 -99.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 R7P A 401 REMARK 615 R7P B 401 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue R7P A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue R7P B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 402 DBREF 6VQM A 109 395 UNP Q07912 ACK1_HUMAN 109 395 DBREF 6VQM B 109 395 UNP Q07912 ACK1_HUMAN 109 395 SEQADV 6VQM GLY A 107 UNP Q07912 EXPRESSION TAG SEQADV 6VQM SER A 108 UNP Q07912 EXPRESSION TAG SEQADV 6VQM GLY B 107 UNP Q07912 EXPRESSION TAG SEQADV 6VQM SER B 108 UNP Q07912 EXPRESSION TAG SEQRES 1 A 289 GLY SER ALA GLY GLU GLY PRO LEU GLN SER LEU THR CYS SEQRES 2 A 289 LEU ILE GLY GLU LYS ASP LEU ARG LEU LEU GLU LYS LEU SEQRES 3 A 289 GLY ASP GLY SER PHE GLY VAL VAL ARG ARG GLY GLU TRP SEQRES 4 A 289 ASP ALA PRO SER GLY LYS THR VAL SER VAL ALA VAL LYS SEQRES 5 A 289 CYS LEU LYS PRO ASP VAL LEU SER GLN PRO GLU ALA MET SEQRES 6 A 289 ASP ASP PHE ILE ARG GLU VAL ASN ALA MET HIS SER LEU SEQRES 7 A 289 ASP HIS ARG ASN LEU ILE ARG LEU TYR GLY VAL VAL LEU SEQRES 8 A 289 THR PRO PRO MET LYS MET VAL THR GLU LEU ALA PRO LEU SEQRES 9 A 289 GLY SER LEU LEU ASP ARG LEU ARG LYS HIS GLN GLY HIS SEQRES 10 A 289 PHE LEU LEU GLY THR LEU SER ARG TYR ALA VAL GLN VAL SEQRES 11 A 289 ALA GLU GLY MET GLY TYR LEU GLU SER LYS ARG PHE ILE SEQRES 12 A 289 HIS ARG ASP LEU ALA ALA ARG ASN LEU LEU LEU ALA THR SEQRES 13 A 289 ARG ASP LEU VAL LYS ILE GLY ASP PHE GLY LEU MET ARG SEQRES 14 A 289 ALA LEU PRO GLN ASN ASP ASP HIS TYR VAL MET GLN GLU SEQRES 15 A 289 HIS ARG LYS VAL PRO PHE ALA TRP CYS ALA PRO GLU SER SEQRES 16 A 289 LEU LYS THR ARG THR PHE SER HIS ALA SER ASP THR TRP SEQRES 17 A 289 MET PHE GLY VAL THR LEU TRP GLU MET PHE THR TYR GLY SEQRES 18 A 289 GLN GLU PRO TRP ILE GLY LEU ASN GLY SER GLN ILE LEU SEQRES 19 A 289 HIS LYS ILE ASP LYS GLU GLY GLU ARG LEU PRO ARG PRO SEQRES 20 A 289 GLU ASP CYS PRO GLN ASP ILE TYR ASN VAL MET VAL GLN SEQRES 21 A 289 CYS TRP ALA HIS LYS PRO GLU ASP ARG PRO THR PHE VAL SEQRES 22 A 289 ALA LEU ARG ASP PHE LEU LEU GLU ALA GLN PRO THR ASP SEQRES 23 A 289 MET ARG ALA SEQRES 1 B 289 GLY SER ALA GLY GLU GLY PRO LEU GLN SER LEU THR CYS SEQRES 2 B 289 LEU ILE GLY GLU LYS ASP LEU ARG LEU LEU GLU LYS LEU SEQRES 3 B 289 GLY ASP GLY SER PHE GLY VAL VAL ARG ARG GLY GLU TRP SEQRES 4 B 289 ASP ALA PRO SER GLY LYS THR VAL SER VAL ALA VAL LYS SEQRES 5 B 289 CYS LEU LYS PRO ASP VAL LEU SER GLN PRO GLU ALA MET SEQRES 6 B 289 ASP ASP PHE ILE ARG GLU VAL ASN ALA MET HIS SER LEU SEQRES 7 B 289 ASP HIS ARG ASN LEU ILE ARG LEU TYR GLY VAL VAL LEU SEQRES 8 B 289 THR PRO PRO MET LYS MET VAL THR GLU LEU ALA PRO LEU SEQRES 9 B 289 GLY SER LEU LEU ASP ARG LEU ARG LYS HIS GLN GLY HIS SEQRES 10 B 289 PHE LEU LEU GLY THR LEU SER ARG TYR ALA VAL GLN VAL SEQRES 11 B 289 ALA GLU GLY MET GLY TYR LEU GLU SER LYS ARG PHE ILE SEQRES 12 B 289 HIS ARG ASP LEU ALA ALA ARG ASN LEU LEU LEU ALA THR SEQRES 13 B 289 ARG ASP LEU VAL LYS ILE GLY ASP PHE GLY LEU MET ARG SEQRES 14 B 289 ALA LEU PRO GLN ASN ASP ASP HIS TYR VAL MET GLN GLU SEQRES 15 B 289 HIS ARG LYS VAL PRO PHE ALA TRP CYS ALA PRO GLU SER SEQRES 16 B 289 LEU LYS THR ARG THR PHE SER HIS ALA SER ASP THR TRP SEQRES 17 B 289 MET PHE GLY VAL THR LEU TRP GLU MET PHE THR TYR GLY SEQRES 18 B 289 GLN GLU PRO TRP ILE GLY LEU ASN GLY SER GLN ILE LEU SEQRES 19 B 289 HIS LYS ILE ASP LYS GLU GLY GLU ARG LEU PRO ARG PRO SEQRES 20 B 289 GLU ASP CYS PRO GLN ASP ILE TYR ASN VAL MET VAL GLN SEQRES 21 B 289 CYS TRP ALA HIS LYS PRO GLU ASP ARG PRO THR PHE VAL SEQRES 22 B 289 ALA LEU ARG ASP PHE LEU LEU GLU ALA GLN PRO THR ASP SEQRES 23 B 289 MET ARG ALA HET R7P A 401 34 HET R7P B 401 34 HET SO4 B 402 5 HETNAM R7P 2-({4-[(3R,5S)-3,5-DIMETHYLPIPERAZIN-1-YL]-2- HETNAM 2 R7P METHOXYPHENYL}AMINO)-9-METHYL-5,7-DIHYDRO-6H- HETNAM 3 R7P PYRIMIDO[5,4-D][1,3]BENZODIAZEPIN-6-ONE HETNAM SO4 SULFATE ION FORMUL 3 R7P 2(C25 H29 N7 O2) FORMUL 5 SO4 O4 S 2- HELIX 1 AA1 GLY A 122 LYS A 124 5 3 HELIX 2 AA2 GLU A 169 SER A 183 1 15 HELIX 3 AA3 SER A 212 HIS A 220 1 9 HELIX 4 AA4 LEU A 225 LYS A 246 1 22 HELIX 5 AA5 ALA A 254 ARG A 256 5 3 HELIX 6 AA6 ALA A 298 ARG A 305 1 8 HELIX 7 AA7 SER A 308 THR A 325 1 18 HELIX 8 AA8 ASN A 335 LYS A 345 1 11 HELIX 9 AA9 PRO A 357 TRP A 368 1 12 HELIX 10 AB1 LYS A 371 ARG A 375 5 5 HELIX 11 AB2 THR A 377 ALA A 388 1 12 HELIX 12 AB3 GLY B 122 LYS B 124 5 3 HELIX 13 AB4 MET B 171 SER B 183 1 13 HELIX 14 AB5 SER B 212 HIS B 220 1 9 HELIX 15 AB6 GLN B 221 PHE B 224 5 4 HELIX 16 AB7 LEU B 225 LYS B 246 1 22 HELIX 17 AB8 ALA B 254 ARG B 256 5 3 HELIX 18 AB9 ALA B 298 ARG B 305 1 8 HELIX 19 AC1 SER B 308 THR B 325 1 18 HELIX 20 AC2 ASN B 335 LYS B 345 1 11 HELIX 21 AC3 PRO B 357 TRP B 368 1 12 HELIX 22 AC4 THR B 377 ALA B 388 1 12 SHEET 1 AA1 6 CYS A 119 LEU A 120 0 SHEET 2 AA1 6 LEU A 192 VAL A 196 1 O TYR A 193 N CYS A 119 SHEET 3 AA1 6 LYS A 202 GLU A 206 -1 O LYS A 202 N VAL A 196 SHEET 4 AA1 6 THR A 152 CYS A 159 -1 N ALA A 156 O THR A 205 SHEET 5 AA1 6 GLY A 138 ASP A 146 -1 N ARG A 141 O VAL A 157 SHEET 6 AA1 6 LEU A 126 GLY A 135 -1 N LEU A 129 O ARG A 142 SHEET 1 AA2 2 PHE A 248 ILE A 249 0 SHEET 2 AA2 2 ARG A 275 ALA A 276 -1 O ARG A 275 N ILE A 249 SHEET 1 AA3 2 LEU A 258 LEU A 260 0 SHEET 2 AA3 2 VAL A 266 ILE A 268 -1 O LYS A 267 N LEU A 259 SHEET 1 AA4 2 TYR A 284 VAL A 285 0 SHEET 2 AA4 2 THR A 306 PHE A 307 -1 O PHE A 307 N TYR A 284 SHEET 1 AA5 6 CYS B 119 LEU B 120 0 SHEET 2 AA5 6 LEU B 192 VAL B 196 1 O TYR B 193 N CYS B 119 SHEET 3 AA5 6 LYS B 202 GLU B 206 -1 O LYS B 202 N VAL B 196 SHEET 4 AA5 6 THR B 152 CYS B 159 -1 N ALA B 156 O THR B 205 SHEET 5 AA5 6 VAL B 139 ASP B 146 -1 N ARG B 141 O VAL B 157 SHEET 6 AA5 6 LEU B 126 ASP B 134 -1 N LEU B 129 O ARG B 142 SHEET 1 AA6 2 PHE B 248 ILE B 249 0 SHEET 2 AA6 2 ARG B 275 ALA B 276 -1 O ARG B 275 N ILE B 249 SHEET 1 AA7 2 LEU B 258 LEU B 260 0 SHEET 2 AA7 2 VAL B 266 ILE B 268 -1 O LYS B 267 N LEU B 259 SHEET 1 AA8 2 TYR B 284 VAL B 285 0 SHEET 2 AA8 2 THR B 306 PHE B 307 -1 O PHE B 307 N TYR B 284 CISPEP 1 PRO A 199 PRO A 200 0 -5.36 CISPEP 2 PRO B 199 PRO B 200 0 -1.29 SITE 1 AC1 10 LEU A 132 VAL A 140 ILE A 190 THR A 205 SITE 2 AC1 10 GLU A 206 LEU A 207 ALA A 208 GLY A 211 SITE 3 AC1 10 LEU A 259 GLY A 269 SITE 1 AC2 12 LEU B 132 ASP B 134 GLY B 135 ALA B 156 SITE 2 AC2 12 THR B 205 GLU B 206 LEU B 207 ALA B 208 SITE 3 AC2 12 PRO B 209 GLY B 211 LEU B 259 ASP B 270 SITE 1 AC3 6 ARG B 251 ARG B 275 TYR B 284 MET B 286 SITE 2 AC3 6 GLN B 287 ARG B 290 CRYST1 70.638 42.453 92.014 90.00 99.13 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014157 0.000000 0.002274 0.00000 SCALE2 0.000000 0.023555 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011007 0.00000