HEADER TRANSFERASE 06-FEB-20 6VR2 TITLE AMINOGLYCOSIDE N-2'-ACETYLTRANSFERASE-IA [AAC(2')-IA] IN COMPLEX WITH TITLE 2 ACETYLATED-TOBRAMYCIN AND COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOGLYCOSIDE 2'-N-ACETYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AAC(2')-IA; COMPND 5 EC: 2.3.1.59; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROVIDENCIA STUARTII; SOURCE 3 ORGANISM_TAXID: 588; SOURCE 4 GENE: AAC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ACETYLTRANSFERASE, GNAT SUPERFAMILY, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.V.BASSENDEN,A.M.BERGHUIS REVDAT 3 11-OCT-23 6VR2 1 REMARK REVDAT 2 14-JUL-21 6VR2 1 JRNL REVDAT 1 02-JUN-21 6VR2 0 JRNL AUTH A.V.BASSENDEN,L.DUMALO,J.PARK,J.BLANCHET,K.MAITI,D.P.ARYA, JRNL AUTH 2 A.M.BERGHUIS JRNL TITL STRUCTURAL AND PHYLOGENETIC ANALYSES OF RESISTANCE TO JRNL TITL 2 NEXT-GENERATION AMINOGLYCOSIDES CONFERRED BY AAC(2') JRNL TITL 3 ENZYMES. JRNL REF SCI REP V. 11 11614 2021 JRNL REFN ESSN 2045-2322 JRNL PMID 34078922 JRNL DOI 10.1038/S41598-021-89446-3 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.17_3644: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 84556 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.460 REMARK 3 FREE R VALUE TEST SET COUNT : 3767 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.5400 - 5.2900 1.00 3023 128 0.1635 0.1849 REMARK 3 2 5.2800 - 4.2000 1.00 3008 136 0.1266 0.1171 REMARK 3 3 4.2000 - 3.6700 1.00 3010 150 0.1310 0.1617 REMARK 3 4 3.6700 - 3.3400 1.00 2984 138 0.1412 0.1688 REMARK 3 5 3.3400 - 3.1000 1.00 3019 140 0.1500 0.2102 REMARK 3 6 3.1000 - 2.9200 1.00 2973 139 0.1579 0.1652 REMARK 3 7 2.9200 - 2.7700 1.00 3058 146 0.1596 0.1894 REMARK 3 8 2.7700 - 2.6500 1.00 3000 146 0.1668 0.1829 REMARK 3 9 2.6500 - 2.5500 1.00 2982 144 0.1633 0.1947 REMARK 3 10 2.5500 - 2.4600 1.00 3047 132 0.1681 0.1815 REMARK 3 11 2.4600 - 2.3800 1.00 2999 141 0.1688 0.2029 REMARK 3 12 2.3800 - 2.3100 1.00 3022 132 0.1631 0.2353 REMARK 3 13 2.3100 - 2.2500 1.00 3012 144 0.1616 0.1910 REMARK 3 14 2.2500 - 2.2000 1.00 2964 144 0.1653 0.1649 REMARK 3 15 2.2000 - 2.1500 1.00 2999 144 0.1711 0.2225 REMARK 3 16 2.1500 - 2.1000 1.00 3017 136 0.1679 0.2104 REMARK 3 17 2.1000 - 2.0600 1.00 3049 146 0.1815 0.1963 REMARK 3 18 2.0600 - 2.0200 1.00 2956 132 0.1837 0.2267 REMARK 3 19 2.0200 - 1.9900 1.00 3040 148 0.1853 0.2194 REMARK 3 20 1.9900 - 1.9500 1.00 2983 148 0.1927 0.2428 REMARK 3 21 1.9500 - 1.9200 1.00 2995 142 0.2054 0.2293 REMARK 3 22 1.9200 - 1.8900 1.00 3059 134 0.2062 0.2606 REMARK 3 23 1.8900 - 1.8600 1.00 2985 136 0.2277 0.2797 REMARK 3 24 1.8600 - 1.8400 1.00 3009 134 0.2426 0.2547 REMARK 3 25 1.8400 - 1.8100 1.00 3009 142 0.2771 0.2531 REMARK 3 26 1.8100 - 1.7900 0.99 2994 136 0.3102 0.3050 REMARK 3 27 1.7900 - 1.7700 0.87 2593 129 0.3248 0.3174 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3176 REMARK 3 ANGLE : 0.905 4314 REMARK 3 CHIRALITY : 0.052 456 REMARK 3 PLANARITY : 0.004 547 REMARK 3 DIHEDRAL : 30.083 1147 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -13.8903 30.5010 18.9672 REMARK 3 T TENSOR REMARK 3 T11: 0.1124 T22: 0.1003 REMARK 3 T33: 0.0928 T12: 0.0006 REMARK 3 T13: -0.0054 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 1.1192 L22: 1.5537 REMARK 3 L33: 0.6449 L12: 0.1619 REMARK 3 L13: -0.0721 L23: -0.0342 REMARK 3 S TENSOR REMARK 3 S11: 0.0495 S12: -0.0207 S13: 0.0101 REMARK 3 S21: 0.1304 S22: -0.0239 S23: -0.0082 REMARK 3 S31: 0.0111 S32: -0.0175 S33: -0.0187 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VR2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1000246902. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : LIQUID ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER METALJET REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.34 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM PLUS REMARK 200 DATA SCALING SOFTWARE : PROTEUM PLUS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44518 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 26.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.520 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7JZS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, SODIUM ACETATE, TOBRAMYCIN, REMARK 280 ACETYL COA, PH 4.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 97.54733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.77367 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 48.77367 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 97.54733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 ASP B 159 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 121 CD CE NZ REMARK 470 LYS B 121 CE NZ REMARK 470 LYS B 139 CD CE NZ REMARK 470 LYS B 157 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 63 O HOH A 301 2.03 REMARK 500 O HOH B 310 O HOH B 429 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 C2A COA B 202 N3A COA B 202 5675 1.45 REMARK 500 N3A COA B 202 N3A COA B 202 5675 1.97 REMARK 500 C2A COA B 202 C2A COA B 202 5675 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 52 -122.36 60.64 REMARK 500 ASP A 69 -117.06 50.76 REMARK 500 LYS A 157 88.88 -158.36 REMARK 500 ASP B 32 30.37 -99.76 REMARK 500 GLN B 52 -110.62 55.31 REMARK 500 ASP B 69 -116.09 49.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 454 DISTANCE = 7.43 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue R7Y A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue R7Y B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 207 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6VOU RELATED DB: PDB REMARK 900 6VOU CONTAINS THE SAME PROTEIN COMPLEXED WITH ACETYLATED PLAZOMICIN REMARK 900 AND COA DBREF 6VR2 A 1 178 UNP Q52424 AAC2_PROST 1 178 DBREF 6VR2 B 1 178 UNP Q52424 AAC2_PROST 1 178 SEQRES 1 A 178 MET GLY ILE GLU TYR ARG SER LEU HIS THR SER GLN LEU SEQRES 2 A 178 THR LEU SER GLU LYS GLU ALA LEU TYR ASP LEU LEU ILE SEQRES 3 A 178 GLU GLY PHE GLU GLY ASP PHE SER HIS ASP ASP PHE ALA SEQRES 4 A 178 HIS THR LEU GLY GLY MET HIS VAL MET ALA PHE ASP GLN SEQRES 5 A 178 GLN LYS LEU VAL GLY HIS VAL ALA ILE ILE GLN ARG HIS SEQRES 6 A 178 MET ALA LEU ASP ASN THR PRO ILE SER VAL GLY TYR VAL SEQRES 7 A 178 GLU ALA MET VAL VAL GLU GLN SER TYR ARG ARG GLN GLY SEQRES 8 A 178 ILE GLY ARG GLN LEU MET LEU GLN THR ASN LYS ILE ILE SEQRES 9 A 178 ALA SER CYS TYR GLN LEU GLY LEU LEU SER ALA SER ASP SEQRES 10 A 178 ASP GLY GLN LYS LEU TYR HIS SER VAL GLY TRP GLN ILE SEQRES 11 A 178 TRP LYS GLY LYS LEU PHE GLU LEU LYS GLN GLY SER TYR SEQRES 12 A 178 ILE ARG SER ILE GLU GLU GLU GLY GLY VAL MET GLY TRP SEQRES 13 A 178 LYS ALA ASP GLY GLU VAL ASP PHE THR ALA SER LEU TYR SEQRES 14 A 178 CYS ASP PHE ARG GLY GLY ASP GLN TRP SEQRES 1 B 178 MET GLY ILE GLU TYR ARG SER LEU HIS THR SER GLN LEU SEQRES 2 B 178 THR LEU SER GLU LYS GLU ALA LEU TYR ASP LEU LEU ILE SEQRES 3 B 178 GLU GLY PHE GLU GLY ASP PHE SER HIS ASP ASP PHE ALA SEQRES 4 B 178 HIS THR LEU GLY GLY MET HIS VAL MET ALA PHE ASP GLN SEQRES 5 B 178 GLN LYS LEU VAL GLY HIS VAL ALA ILE ILE GLN ARG HIS SEQRES 6 B 178 MET ALA LEU ASP ASN THR PRO ILE SER VAL GLY TYR VAL SEQRES 7 B 178 GLU ALA MET VAL VAL GLU GLN SER TYR ARG ARG GLN GLY SEQRES 8 B 178 ILE GLY ARG GLN LEU MET LEU GLN THR ASN LYS ILE ILE SEQRES 9 B 178 ALA SER CYS TYR GLN LEU GLY LEU LEU SER ALA SER ASP SEQRES 10 B 178 ASP GLY GLN LYS LEU TYR HIS SER VAL GLY TRP GLN ILE SEQRES 11 B 178 TRP LYS GLY LYS LEU PHE GLU LEU LYS GLN GLY SER TYR SEQRES 12 B 178 ILE ARG SER ILE GLU GLU GLU GLY GLY VAL MET GLY TRP SEQRES 13 B 178 LYS ALA ASP GLY GLU VAL ASP PHE THR ALA SER LEU TYR SEQRES 14 B 178 CYS ASP PHE ARG GLY GLY ASP GLN TRP HET R7Y A 201 35 HET COA A 202 48 HET ACT A 203 4 HET ACT A 204 4 HET R7Y B 201 35 HET COA B 202 48 HET ACT B 203 4 HET ACT B 204 4 HET ACT B 205 4 HET ACT B 206 4 HET ACT B 207 4 HETNAM R7Y (1S,2S,3R,4S,6R)-3-{[2-(ACETYLAMINO)-6-AMINO-2,3,6- HETNAM 2 R7Y TRIDEOXY-ALPHA-D-RIBO-HEXOPYRANOSYL]OXY}-4,6-DIAMINO- HETNAM 3 R7Y 2-HYDROXYCYCLOH EXYL 3-AMINO-3-DEOXY-ALPHA-D- HETNAM 4 R7Y GLUCOPYRANOSIDE HETNAM COA COENZYME A HETNAM ACT ACETATE ION HETSYN R7Y ACETYLATED-TOBRAMYCIN FORMUL 3 R7Y 2(C20 H39 N5 O10) FORMUL 4 COA 2(C21 H36 N7 O16 P3 S) FORMUL 5 ACT 7(C2 H3 O2 1-) FORMUL 14 HOH *324(H2 O) HELIX 1 AA1 SER A 11 LEU A 13 5 3 HELIX 2 AA2 THR A 14 GLU A 30 1 17 HELIX 3 AA3 SER A 34 THR A 41 1 8 HELIX 4 AA4 GLN A 85 ARG A 88 5 4 HELIX 5 AA5 GLY A 91 TYR A 108 1 18 HELIX 6 AA6 GLY A 119 SER A 125 1 7 HELIX 7 AA7 ILE A 147 GLU A 150 5 4 HELIX 8 AA8 SER B 11 LEU B 13 5 3 HELIX 9 AA9 THR B 14 PHE B 29 1 16 HELIX 10 AB1 SER B 34 THR B 41 1 8 HELIX 11 AB2 GLN B 85 ARG B 88 5 4 HELIX 12 AB3 GLY B 91 TYR B 108 1 18 HELIX 13 AB4 GLN B 120 SER B 125 1 6 HELIX 14 AB5 ILE B 147 GLU B 150 5 4 SHEET 1 AA1 7 GLU A 4 HIS A 9 0 SHEET 2 AA1 7 MET A 45 ASP A 51 -1 O MET A 48 N ARG A 6 SHEET 3 AA1 7 LYS A 54 LEU A 68 -1 O VAL A 59 N VAL A 47 SHEET 4 AA1 7 THR A 71 VAL A 83 -1 O TYR A 77 N ILE A 62 SHEET 5 AA1 7 LEU A 110 SER A 114 1 O LEU A 112 N VAL A 78 SHEET 6 AA1 7 VAL A 153 TRP A 156 -1 O TRP A 156 N GLY A 111 SHEET 7 AA1 7 GLN A 129 ILE A 130 -1 N GLN A 129 O GLY A 155 SHEET 1 AA2 6 GLU A 4 HIS A 9 0 SHEET 2 AA2 6 MET A 45 ASP A 51 -1 O MET A 48 N ARG A 6 SHEET 3 AA2 6 LYS A 54 LEU A 68 -1 O VAL A 59 N VAL A 47 SHEET 4 AA2 6 LEU A 168 TYR A 169 -1 O TYR A 169 N ALA A 67 SHEET 5 AA2 6 LEU A 135 LYS A 139 1 N PHE A 136 O LEU A 168 SHEET 6 AA2 6 SER A 142 ARG A 145 -1 O SER A 142 N LYS A 139 SHEET 1 AA3 7 ILE B 3 HIS B 9 0 SHEET 2 AA3 7 MET B 45 ASP B 51 -1 O MET B 48 N ARG B 6 SHEET 3 AA3 7 LYS B 54 LEU B 68 -1 O VAL B 59 N VAL B 47 SHEET 4 AA3 7 THR B 71 VAL B 83 -1 O TYR B 77 N ILE B 62 SHEET 5 AA3 7 LEU B 110 SER B 114 1 O LEU B 110 N GLY B 76 SHEET 6 AA3 7 VAL B 153 TRP B 156 -1 O TRP B 156 N GLY B 111 SHEET 7 AA3 7 GLN B 129 ILE B 130 -1 N GLN B 129 O GLY B 155 SHEET 1 AA4 6 ILE B 3 HIS B 9 0 SHEET 2 AA4 6 MET B 45 ASP B 51 -1 O MET B 48 N ARG B 6 SHEET 3 AA4 6 LYS B 54 LEU B 68 -1 O VAL B 59 N VAL B 47 SHEET 4 AA4 6 LEU B 168 TYR B 169 -1 O TYR B 169 N ALA B 67 SHEET 5 AA4 6 LEU B 135 LYS B 139 1 N PHE B 136 O LEU B 168 SHEET 6 AA4 6 SER B 142 ARG B 145 -1 O SER B 142 N LYS B 139 SITE 1 AC1 19 PHE A 29 ASP A 32 PHE A 33 ASP A 37 SITE 2 AC1 19 GLU A 79 ALA A 80 MET A 81 SER A 114 SITE 3 AC1 19 SER A 116 ASP A 117 TYR A 123 GLU A 149 SITE 4 AC1 19 TRP A 178 HOH A 320 HOH A 328 HOH A 342 SITE 5 AC1 19 HOH A 343 HOH A 355 HOH A 385 SITE 1 AC2 19 GLY A 28 PHE A 29 MET A 81 VAL A 82 SITE 2 AC2 19 VAL A 83 ARG A 88 ARG A 89 GLN A 90 SITE 3 AC2 19 GLY A 91 ILE A 92 GLY A 93 ARG A 94 SITE 4 AC2 19 SER A 116 TYR A 123 HOH A 308 HOH A 321 SITE 5 AC2 19 HOH A 334 HOH A 387 HOH A 414 SITE 1 AC3 1 HOH B 470 SITE 1 AC4 1 VAL A 162 SITE 1 AC5 21 HOH A 424 HOH A 454 PHE B 29 ASP B 32 SITE 2 AC5 21 PHE B 33 ASP B 37 ALA B 80 MET B 81 SITE 3 AC5 21 SER B 114 SER B 116 ASP B 117 GLU B 148 SITE 4 AC5 21 GLU B 149 TRP B 178 HOH B 301 HOH B 326 SITE 5 AC5 21 HOH B 341 HOH B 344 HOH B 349 HOH B 354 SITE 6 AC5 21 HOH B 369 SITE 1 AC6 23 GLY B 28 PHE B 29 MET B 81 VAL B 82 SITE 2 AC6 23 VAL B 83 ARG B 88 ARG B 89 GLN B 90 SITE 3 AC6 23 GLY B 91 ILE B 92 GLY B 93 ARG B 94 SITE 4 AC6 23 TYR B 123 HOH B 307 HOH B 324 HOH B 334 SITE 5 AC6 23 HOH B 374 HOH B 395 HOH B 404 HOH B 405 SITE 6 AC6 23 HOH B 419 HOH B 420 HOH B 424 SITE 1 AC7 3 ASP B 69 ASP B 163 ALA B 166 SITE 1 AC8 3 ASP A 69 ASP A 163 GLU B 150 SITE 1 AC9 4 LYS A 132 HOH A 431 ILE B 147 GLU B 148 SITE 1 AD1 1 GLU B 161 CRYST1 72.798 72.798 146.321 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013737 0.007931 0.000000 0.00000 SCALE2 0.000000 0.015862 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006834 0.00000