HEADER VIRAL PROTEIN 07-FEB-20 6VRG TITLE STRUCTURE OF HIV-1 INTEGRASE WITH NATIVE AMINO-TERMINAL SEQUENCE COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: POL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS INTEGRASE, ZINC ION BINDING, NUCLEIC ACID BINDING, DNA INTEGRATION, KEYWDS 2 VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.EILERS,K.GUPTA,A.ALLEN,J.ZHOU,Y.HWANG,M.CORY,F.D.BUSHMAN,G.D.VAN AUTHOR 2 DUYNE REVDAT 3 11-OCT-23 6VRG 1 REMARK REVDAT 2 16-SEP-20 6VRG 1 JRNL REVDAT 1 09-SEP-20 6VRG 0 JRNL AUTH G.EILERS,K.GUPTA,A.ALLEN,J.ZHOU,Y.HWANG,M.B.CORY, JRNL AUTH 2 F.D.BUSHMAN,G.VAN DUYNE JRNL TITL INFLUENCE OF THE AMINO-TERMINAL SEQUENCE ON THE STRUCTURE JRNL TITL 2 AND FUNCTION OF HIV INTEGRASE. JRNL REF RETROVIROLOGY V. 17 28 2020 JRNL REFN ESSN 1742-4690 JRNL PMID 32867805 JRNL DOI 10.1186/S12977-020-00537-X REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 96.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.351 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 59636 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1169 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 96.5672 - 4.7999 1.00 7726 154 0.2210 0.2576 REMARK 3 2 4.7999 - 3.8097 1.00 7381 148 0.1610 0.1755 REMARK 3 3 3.8097 - 3.3281 1.00 7314 146 0.1880 0.2231 REMARK 3 4 3.3281 - 3.0238 1.00 7256 144 0.2168 0.2428 REMARK 3 5 3.0238 - 2.8071 1.00 7221 146 0.2480 0.2818 REMARK 3 6 2.8071 - 2.6416 1.00 7199 143 0.2762 0.3103 REMARK 3 7 2.6416 - 2.5092 1.00 7180 143 0.2959 0.3192 REMARK 3 8 2.5092 - 2.4000 1.00 7190 145 0.3200 0.3372 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5950 REMARK 3 ANGLE : 0.589 8037 REMARK 3 CHIRALITY : 0.043 910 REMARK 3 PLANARITY : 0.003 1017 REMARK 3 DIHEDRAL : 15.851 2151 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VRG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1000246932. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92013 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59665 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 96.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 26.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 26.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1K6Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.7 M NAH2PO4/1.0 M K2HPO4, 0.1M NA REMARK 280 ACETATE, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 139.60150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.45950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.45950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 209.40225 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.45950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.45950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 69.80075 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.45950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.45950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 209.40225 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.45950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.45950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 69.80075 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 139.60150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 451 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 46 REMARK 465 GLY A 47 REMARK 465 GLU A 48 REMARK 465 ALA A 49 REMARK 465 MET A 50 REMARK 465 HIS A 51 REMARK 465 GLY A 52 REMARK 465 GLN A 53 REMARK 465 VAL A 54 REMARK 465 ASP A 55 REMARK 465 ASP A 139 REMARK 465 GLY A 140 REMARK 465 ILE A 141 REMARK 465 PRO A 142 REMARK 465 TYR A 143 REMARK 465 ASN A 144 REMARK 465 PRO A 145 REMARK 465 GLN A 146 REMARK 465 SER A 147 REMARK 465 GLN A 148 REMARK 465 GLU A 212 REMARK 465 LYS B 46 REMARK 465 GLY B 47 REMARK 465 GLU B 48 REMARK 465 ALA B 49 REMARK 465 MET B 50 REMARK 465 HIS B 51 REMARK 465 GLY B 52 REMARK 465 GLN B 53 REMARK 465 VAL B 54 REMARK 465 ASP B 55 REMARK 465 ASP B 139 REMARK 465 GLY B 140 REMARK 465 ILE B 141 REMARK 465 PRO B 142 REMARK 465 TYR B 143 REMARK 465 ASN B 144 REMARK 465 PRO B 145 REMARK 465 GLN B 146 REMARK 465 SER B 147 REMARK 465 GLN B 148 REMARK 465 GLY B 149 REMARK 465 LYS B 211 REMARK 465 GLU B 212 REMARK 465 LYS C 46 REMARK 465 GLY C 47 REMARK 465 GLU C 48 REMARK 465 ALA C 49 REMARK 465 MET C 50 REMARK 465 HIS C 51 REMARK 465 GLY C 52 REMARK 465 GLN C 53 REMARK 465 VAL C 54 REMARK 465 ASP C 55 REMARK 465 ASP C 139 REMARK 465 GLY C 140 REMARK 465 ILE C 141 REMARK 465 PRO C 142 REMARK 465 TYR C 143 REMARK 465 ASN C 144 REMARK 465 PRO C 145 REMARK 465 GLN C 146 REMARK 465 SER C 147 REMARK 465 GLN C 148 REMARK 465 GLY C 149 REMARK 465 VAL C 150 REMARK 465 ILE C 151 REMARK 465 GLU C 152 REMARK 465 LYS C 211 REMARK 465 GLU C 212 REMARK 465 LYS D 46 REMARK 465 GLY D 47 REMARK 465 GLU D 48 REMARK 465 ALA D 49 REMARK 465 MET D 50 REMARK 465 HIS D 51 REMARK 465 GLY D 52 REMARK 465 GLN D 53 REMARK 465 VAL D 54 REMARK 465 ASP D 55 REMARK 465 ASP D 139 REMARK 465 GLY D 140 REMARK 465 ILE D 141 REMARK 465 PRO D 142 REMARK 465 TYR D 143 REMARK 465 ASN D 144 REMARK 465 PRO D 145 REMARK 465 GLN D 146 REMARK 465 SER D 147 REMARK 465 GLN D 148 REMARK 465 GLY D 149 REMARK 465 THR D 210 REMARK 465 LYS D 211 REMARK 465 GLU D 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 117 38.64 -89.84 REMARK 500 PRO B 109 99.61 -69.92 REMARK 500 ASN B 117 43.00 -94.69 REMARK 500 GLU C 92 82.52 -69.31 REMARK 500 GLU C 170 -74.49 -87.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 12 NE2 REMARK 620 2 HIS A 16 ND1 112.5 REMARK 620 3 CYS A 40 SG 103.7 103.4 REMARK 620 4 CYS A 43 SG 109.3 107.5 120.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 302 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 37 O REMARK 620 2 ALA A 38 O 67.3 REMARK 620 3 CYS A 40 O 67.9 83.2 REMARK 620 4 CYS A 43 O 92.7 154.3 74.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 12 NE2 REMARK 620 2 HIS B 16 ND1 114.9 REMARK 620 3 CYS B 40 SG 105.5 102.1 REMARK 620 4 CYS B 43 SG 108.2 105.2 121.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 302 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 37 O REMARK 620 2 ALA B 38 O 67.4 REMARK 620 3 CYS B 40 O 67.9 85.3 REMARK 620 4 CYS B 43 O 81.1 148.4 80.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 12 NE2 REMARK 620 2 HIS C 16 ND1 115.2 REMARK 620 3 CYS C 40 SG 104.1 101.3 REMARK 620 4 CYS C 43 SG 113.3 108.2 114.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 302 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA C 38 O REMARK 620 2 CYS C 40 O 85.0 REMARK 620 3 CYS C 43 O 150.2 77.1 REMARK 620 4 HOH C 436 O 68.8 71.2 125.2 REMARK 620 5 HOH C 442 O 115.8 81.0 84.9 47.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 12 NE2 REMARK 620 2 HIS D 16 ND1 104.6 REMARK 620 3 CYS D 40 SG 100.9 103.8 REMARK 620 4 CYS D 43 SG 102.8 116.8 125.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K D 302 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL D 37 O REMARK 620 2 ALA D 38 O 70.8 REMARK 620 3 CYS D 40 O 68.0 87.2 REMARK 620 4 CYS D 43 O 92.8 163.1 82.5 REMARK 620 5 HOH D 436 O 103.0 104.0 162.8 83.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K D 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 D 303 DBREF 6VRG A 1 212 UNP F2WR39 F2WR39_9HIV1 1 212 DBREF 6VRG B 1 212 UNP F2WR39 F2WR39_9HIV1 1 212 DBREF 6VRG C 1 212 UNP F2WR39 F2WR39_9HIV1 1 212 DBREF 6VRG D 1 212 UNP F2WR39 F2WR39_9HIV1 1 212 SEQADV 6VRG ASP A 131 UNP F2WR39 TRP 131 ENGINEERED MUTATION SEQADV 6VRG ASP A 139 UNP F2WR39 PHE 139 ENGINEERED MUTATION SEQADV 6VRG LYS A 185 UNP F2WR39 PHE 185 ENGINEERED MUTATION SEQADV 6VRG ASP B 131 UNP F2WR39 TRP 131 ENGINEERED MUTATION SEQADV 6VRG ASP B 139 UNP F2WR39 PHE 139 ENGINEERED MUTATION SEQADV 6VRG LYS B 185 UNP F2WR39 PHE 185 ENGINEERED MUTATION SEQADV 6VRG ASP C 131 UNP F2WR39 TRP 131 ENGINEERED MUTATION SEQADV 6VRG ASP C 139 UNP F2WR39 PHE 139 ENGINEERED MUTATION SEQADV 6VRG LYS C 185 UNP F2WR39 PHE 185 ENGINEERED MUTATION SEQADV 6VRG ASP D 131 UNP F2WR39 TRP 131 ENGINEERED MUTATION SEQADV 6VRG ASP D 139 UNP F2WR39 PHE 139 ENGINEERED MUTATION SEQADV 6VRG LYS D 185 UNP F2WR39 PHE 185 ENGINEERED MUTATION SEQRES 1 A 212 PHE LEU ASP GLY ILE ASP LYS ALA GLN GLU GLU HIS GLU SEQRES 2 A 212 LYS TYR HIS SER ASN TRP ARG ALA MET ALA SER ASP PHE SEQRES 3 A 212 ASN LEU PRO PRO VAL VAL ALA LYS GLU ILE VAL ALA SER SEQRES 4 A 212 CYS ASP LYS CYS GLN LEU LYS GLY GLU ALA MET HIS GLY SEQRES 5 A 212 GLN VAL ASP CYS SER PRO GLY ILE TRP GLN LEU ASP CYS SEQRES 6 A 212 THR HIS LEU GLU GLY LYS VAL ILE LEU VAL ALA VAL HIS SEQRES 7 A 212 VAL ALA SER GLY TYR ILE GLU ALA GLU VAL ILE PRO ALA SEQRES 8 A 212 GLU THR GLY GLN GLU THR ALA TYR PHE LEU LEU LYS LEU SEQRES 9 A 212 ALA GLY ARG TRP PRO VAL LYS THR VAL HIS THR ASP ASN SEQRES 10 A 212 GLY SER ASN PHE THR SER THR THR VAL LYS ALA ALA CYS SEQRES 11 A 212 ASP TRP ALA GLY ILE LYS GLN GLU ASP GLY ILE PRO TYR SEQRES 12 A 212 ASN PRO GLN SER GLN GLY VAL ILE GLU SER MET ASN LYS SEQRES 13 A 212 GLU LEU LYS LYS ILE ILE GLY GLN VAL ARG ASP GLN ALA SEQRES 14 A 212 GLU HIS LEU LYS THR ALA VAL GLN MET ALA VAL PHE ILE SEQRES 15 A 212 HIS ASN LYS LYS ARG LYS GLY GLY ILE GLY GLY TYR SER SEQRES 16 A 212 ALA GLY GLU ARG ILE VAL ASP ILE ILE ALA THR ASP ILE SEQRES 17 A 212 GLN THR LYS GLU SEQRES 1 B 212 PHE LEU ASP GLY ILE ASP LYS ALA GLN GLU GLU HIS GLU SEQRES 2 B 212 LYS TYR HIS SER ASN TRP ARG ALA MET ALA SER ASP PHE SEQRES 3 B 212 ASN LEU PRO PRO VAL VAL ALA LYS GLU ILE VAL ALA SER SEQRES 4 B 212 CYS ASP LYS CYS GLN LEU LYS GLY GLU ALA MET HIS GLY SEQRES 5 B 212 GLN VAL ASP CYS SER PRO GLY ILE TRP GLN LEU ASP CYS SEQRES 6 B 212 THR HIS LEU GLU GLY LYS VAL ILE LEU VAL ALA VAL HIS SEQRES 7 B 212 VAL ALA SER GLY TYR ILE GLU ALA GLU VAL ILE PRO ALA SEQRES 8 B 212 GLU THR GLY GLN GLU THR ALA TYR PHE LEU LEU LYS LEU SEQRES 9 B 212 ALA GLY ARG TRP PRO VAL LYS THR VAL HIS THR ASP ASN SEQRES 10 B 212 GLY SER ASN PHE THR SER THR THR VAL LYS ALA ALA CYS SEQRES 11 B 212 ASP TRP ALA GLY ILE LYS GLN GLU ASP GLY ILE PRO TYR SEQRES 12 B 212 ASN PRO GLN SER GLN GLY VAL ILE GLU SER MET ASN LYS SEQRES 13 B 212 GLU LEU LYS LYS ILE ILE GLY GLN VAL ARG ASP GLN ALA SEQRES 14 B 212 GLU HIS LEU LYS THR ALA VAL GLN MET ALA VAL PHE ILE SEQRES 15 B 212 HIS ASN LYS LYS ARG LYS GLY GLY ILE GLY GLY TYR SER SEQRES 16 B 212 ALA GLY GLU ARG ILE VAL ASP ILE ILE ALA THR ASP ILE SEQRES 17 B 212 GLN THR LYS GLU SEQRES 1 C 212 PHE LEU ASP GLY ILE ASP LYS ALA GLN GLU GLU HIS GLU SEQRES 2 C 212 LYS TYR HIS SER ASN TRP ARG ALA MET ALA SER ASP PHE SEQRES 3 C 212 ASN LEU PRO PRO VAL VAL ALA LYS GLU ILE VAL ALA SER SEQRES 4 C 212 CYS ASP LYS CYS GLN LEU LYS GLY GLU ALA MET HIS GLY SEQRES 5 C 212 GLN VAL ASP CYS SER PRO GLY ILE TRP GLN LEU ASP CYS SEQRES 6 C 212 THR HIS LEU GLU GLY LYS VAL ILE LEU VAL ALA VAL HIS SEQRES 7 C 212 VAL ALA SER GLY TYR ILE GLU ALA GLU VAL ILE PRO ALA SEQRES 8 C 212 GLU THR GLY GLN GLU THR ALA TYR PHE LEU LEU LYS LEU SEQRES 9 C 212 ALA GLY ARG TRP PRO VAL LYS THR VAL HIS THR ASP ASN SEQRES 10 C 212 GLY SER ASN PHE THR SER THR THR VAL LYS ALA ALA CYS SEQRES 11 C 212 ASP TRP ALA GLY ILE LYS GLN GLU ASP GLY ILE PRO TYR SEQRES 12 C 212 ASN PRO GLN SER GLN GLY VAL ILE GLU SER MET ASN LYS SEQRES 13 C 212 GLU LEU LYS LYS ILE ILE GLY GLN VAL ARG ASP GLN ALA SEQRES 14 C 212 GLU HIS LEU LYS THR ALA VAL GLN MET ALA VAL PHE ILE SEQRES 15 C 212 HIS ASN LYS LYS ARG LYS GLY GLY ILE GLY GLY TYR SER SEQRES 16 C 212 ALA GLY GLU ARG ILE VAL ASP ILE ILE ALA THR ASP ILE SEQRES 17 C 212 GLN THR LYS GLU SEQRES 1 D 212 PHE LEU ASP GLY ILE ASP LYS ALA GLN GLU GLU HIS GLU SEQRES 2 D 212 LYS TYR HIS SER ASN TRP ARG ALA MET ALA SER ASP PHE SEQRES 3 D 212 ASN LEU PRO PRO VAL VAL ALA LYS GLU ILE VAL ALA SER SEQRES 4 D 212 CYS ASP LYS CYS GLN LEU LYS GLY GLU ALA MET HIS GLY SEQRES 5 D 212 GLN VAL ASP CYS SER PRO GLY ILE TRP GLN LEU ASP CYS SEQRES 6 D 212 THR HIS LEU GLU GLY LYS VAL ILE LEU VAL ALA VAL HIS SEQRES 7 D 212 VAL ALA SER GLY TYR ILE GLU ALA GLU VAL ILE PRO ALA SEQRES 8 D 212 GLU THR GLY GLN GLU THR ALA TYR PHE LEU LEU LYS LEU SEQRES 9 D 212 ALA GLY ARG TRP PRO VAL LYS THR VAL HIS THR ASP ASN SEQRES 10 D 212 GLY SER ASN PHE THR SER THR THR VAL LYS ALA ALA CYS SEQRES 11 D 212 ASP TRP ALA GLY ILE LYS GLN GLU ASP GLY ILE PRO TYR SEQRES 12 D 212 ASN PRO GLN SER GLN GLY VAL ILE GLU SER MET ASN LYS SEQRES 13 D 212 GLU LEU LYS LYS ILE ILE GLY GLN VAL ARG ASP GLN ALA SEQRES 14 D 212 GLU HIS LEU LYS THR ALA VAL GLN MET ALA VAL PHE ILE SEQRES 15 D 212 HIS ASN LYS LYS ARG LYS GLY GLY ILE GLY GLY TYR SER SEQRES 16 D 212 ALA GLY GLU ARG ILE VAL ASP ILE ILE ALA THR ASP ILE SEQRES 17 D 212 GLN THR LYS GLU HET ZN A 301 1 HET K A 302 1 HET PO4 A 303 5 HET ZN B 301 1 HET K B 302 1 HET PO4 B 303 5 HET ZN C 301 1 HET K C 302 1 HET PO4 C 303 5 HET ZN D 301 1 HET K D 302 1 HET PO4 D 303 5 HETNAM ZN ZINC ION HETNAM K POTASSIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 5 ZN 4(ZN 2+) FORMUL 6 K 4(K 1+) FORMUL 7 PO4 4(O4 P 3-) FORMUL 17 HOH *226(H2 O) HELIX 1 AA1 ASP A 3 HIS A 16 1 14 HELIX 2 AA2 ASN A 18 ASN A 27 1 10 HELIX 3 AA3 PRO A 29 CYS A 40 1 12 HELIX 4 AA4 THR A 93 GLY A 106 1 14 HELIX 5 AA5 SER A 123 GLY A 134 1 12 HELIX 6 AA6 VAL A 150 ARG A 166 1 17 HELIX 7 AA7 ASP A 167 ALA A 169 5 3 HELIX 8 AA8 HIS A 171 LYS A 186 1 16 HELIX 9 AA9 SER A 195 LYS A 211 1 17 HELIX 10 AB1 LEU B 2 HIS B 16 1 15 HELIX 11 AB2 ASN B 18 PHE B 26 1 9 HELIX 12 AB3 PRO B 29 CYS B 40 1 12 HELIX 13 AB4 THR B 93 GLY B 106 1 14 HELIX 14 AB5 SER B 123 GLY B 134 1 12 HELIX 15 AB6 ILE B 151 ARG B 166 1 16 HELIX 16 AB7 ASP B 167 ALA B 169 5 3 HELIX 17 AB8 HIS B 171 LYS B 186 1 16 HELIX 18 AB9 SER B 195 THR B 210 1 16 HELIX 19 AC1 ASP C 3 HIS C 16 1 14 HELIX 20 AC2 ASN C 18 PHE C 26 1 9 HELIX 21 AC3 PRO C 29 CYS C 40 1 12 HELIX 22 AC4 THR C 93 GLY C 106 1 14 HELIX 23 AC5 GLY C 118 SER C 123 1 6 HELIX 24 AC6 SER C 123 GLY C 134 1 12 HELIX 25 AC7 MET C 154 ARG C 166 1 13 HELIX 26 AC8 ASP C 167 ALA C 169 5 3 HELIX 27 AC9 HIS C 171 LYS C 186 1 16 HELIX 28 AD1 ALA C 196 THR C 210 1 15 HELIX 29 AD2 LEU D 2 HIS D 16 1 15 HELIX 30 AD3 ASN D 18 PHE D 26 1 9 HELIX 31 AD4 PRO D 29 CYS D 40 1 12 HELIX 32 AD5 THR D 93 GLY D 106 1 14 HELIX 33 AD6 GLY D 118 SER D 123 1 6 HELIX 34 AD7 SER D 123 GLY D 134 1 12 HELIX 35 AD8 ILE D 151 ARG D 166 1 16 HELIX 36 AD9 ASP D 167 ALA D 169 5 3 HELIX 37 AE1 HIS D 171 LYS D 186 1 16 HELIX 38 AE2 ALA D 196 GLN D 209 1 14 SHEET 1 AA1 5 ILE A 84 ILE A 89 0 SHEET 2 AA1 5 LYS A 71 HIS A 78 -1 N ALA A 76 O GLU A 85 SHEET 3 AA1 5 ILE A 60 LEU A 68 -1 N THR A 66 O ILE A 73 SHEET 4 AA1 5 THR A 112 HIS A 114 1 O HIS A 114 N TRP A 61 SHEET 5 AA1 5 LYS A 136 GLU A 138 1 O LYS A 136 N VAL A 113 SHEET 1 AA2 5 ILE B 84 ILE B 89 0 SHEET 2 AA2 5 LYS B 71 HIS B 78 -1 N ALA B 76 O GLU B 85 SHEET 3 AA2 5 ILE B 60 LEU B 68 -1 N THR B 66 O ILE B 73 SHEET 4 AA2 5 THR B 112 HIS B 114 1 O HIS B 114 N LEU B 63 SHEET 5 AA2 5 LYS B 136 GLU B 138 1 O LYS B 136 N VAL B 113 SHEET 1 AA3 5 ILE C 84 ILE C 89 0 SHEET 2 AA3 5 LYS C 71 HIS C 78 -1 N ALA C 76 O GLU C 85 SHEET 3 AA3 5 ILE C 60 LEU C 68 -1 N THR C 66 O ILE C 73 SHEET 4 AA3 5 THR C 112 THR C 115 1 O HIS C 114 N TRP C 61 SHEET 5 AA3 5 LYS C 136 GLN C 137 1 O LYS C 136 N VAL C 113 SHEET 1 AA4 2 LYS C 188 GLY C 189 0 SHEET 2 AA4 2 TYR C 194 SER C 195 -1 O TYR C 194 N GLY C 189 SHEET 1 AA5 5 ILE D 84 ILE D 89 0 SHEET 2 AA5 5 LYS D 71 HIS D 78 -1 N ALA D 76 O GLU D 85 SHEET 3 AA5 5 ILE D 60 LEU D 68 -1 N THR D 66 O ILE D 73 SHEET 4 AA5 5 THR D 112 HIS D 114 1 O HIS D 114 N LEU D 63 SHEET 5 AA5 5 LYS D 136 GLU D 138 1 O LYS D 136 N VAL D 113 SHEET 1 AA6 2 LYS D 188 GLY D 189 0 SHEET 2 AA6 2 TYR D 194 SER D 195 -1 O TYR D 194 N GLY D 189 LINK NE2 HIS A 12 ZN ZN A 301 1555 1555 2.03 LINK ND1 HIS A 16 ZN ZN A 301 1555 1555 2.04 LINK O VAL A 37 K K A 302 1555 1555 3.36 LINK O ALA A 38 K K A 302 1555 1555 2.75 LINK SG CYS A 40 ZN ZN A 301 1555 1555 2.28 LINK O CYS A 40 K K A 302 1555 1555 2.81 LINK SG CYS A 43 ZN ZN A 301 1555 1555 2.26 LINK O CYS A 43 K K A 302 1555 1555 2.74 LINK NE2 HIS B 12 ZN ZN B 301 1555 1555 2.01 LINK ND1 HIS B 16 ZN ZN B 301 1555 1555 2.07 LINK O VAL B 37 K K B 302 1555 1555 3.46 LINK O ALA B 38 K K B 302 1555 1555 2.85 LINK SG CYS B 40 ZN ZN B 301 1555 1555 2.31 LINK O CYS B 40 K K B 302 1555 1555 2.69 LINK SG CYS B 43 ZN ZN B 301 1555 1555 2.28 LINK O CYS B 43 K K B 302 1555 1555 2.63 LINK NE2 HIS C 12 ZN ZN C 301 1555 1555 2.02 LINK ND1 HIS C 16 ZN ZN C 301 1555 1555 2.03 LINK O ALA C 38 K K C 302 1555 1555 2.72 LINK SG CYS C 40 ZN ZN C 301 1555 1555 2.35 LINK O CYS C 40 K K C 302 1555 1555 2.83 LINK SG CYS C 43 ZN ZN C 301 1555 1555 2.17 LINK O CYS C 43 K K C 302 1555 1555 2.72 LINK K K C 302 O HOH C 436 1555 1555 3.39 LINK K K C 302 O HOH C 442 1555 1555 2.83 LINK NE2 HIS D 12 ZN ZN D 301 1555 1555 2.03 LINK ND1 HIS D 16 ZN ZN D 301 1555 1555 2.03 LINK O VAL D 37 K K D 302 1555 1555 3.17 LINK O ALA D 38 K K D 302 1555 1555 2.72 LINK SG CYS D 40 ZN ZN D 301 1555 1555 2.26 LINK O CYS D 40 K K D 302 1555 1555 2.64 LINK SG CYS D 43 ZN ZN D 301 1555 1555 2.30 LINK O CYS D 43 K K D 302 1555 1555 2.76 LINK K K D 302 O HOH D 436 1555 1555 2.99 SITE 1 AC1 4 HIS A 12 HIS A 16 CYS A 40 CYS A 43 SITE 1 AC2 4 VAL A 37 ALA A 38 CYS A 40 CYS A 43 SITE 1 AC3 6 THR A 66 HIS A 67 LYS A 159 HOH A 403 SITE 2 AC3 6 HIS C 171 HOH C 414 SITE 1 AC4 4 HIS B 12 HIS B 16 CYS B 40 CYS B 43 SITE 1 AC5 4 VAL B 37 ALA B 38 CYS B 40 CYS B 43 SITE 1 AC6 7 CYS B 65 THR B 66 HIS B 67 GLY B 118 SITE 2 AC6 7 SER B 119 LYS B 159 HOH B 410 SITE 1 AC7 4 HIS C 12 HIS C 16 CYS C 40 CYS C 43 SITE 1 AC8 5 VAL C 37 ALA C 38 CYS C 40 CYS C 43 SITE 2 AC8 5 HOH C 442 SITE 1 AC9 3 THR C 66 HIS C 67 LYS C 159 SITE 1 AD1 4 HIS D 12 HIS D 16 CYS D 40 CYS D 43 SITE 1 AD2 5 VAL D 37 ALA D 38 CYS D 40 CYS D 43 SITE 2 AD2 5 HOH D 436 SITE 1 AD3 5 CYS D 65 THR D 66 HIS D 67 LYS D 159 SITE 2 AD3 5 HOH D 406 CRYST1 102.919 102.919 279.203 90.00 90.00 90.00 P 43 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009716 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009716 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003582 0.00000