HEADER HYDROLASE 10-FEB-20 6VS4 TITLE CRYSTAL STRUCTURE OF ADP RIBOSYLATION FACTOR-LIKE GTP BINDING PROTEIN TITLE 2 /SMALL COPII COAT GTPASE SAR1 FROM ENCEPHALITOZOON CUNICULI IN TITLE 3 COMPLEX WITH GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMALL COPII COAT GTPASE SAR1; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.6.5.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENCEPHALITOZOON CUNICULI (STRAIN GB-M1); SOURCE 3 ORGANISM_COMMON: MICROSPORIDIAN PARASITE; SOURCE 4 ORGANISM_TAXID: 284813; SOURCE 5 STRAIN: GB-M1; SOURCE 6 GENE: SAR1, ECU05_0090; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: ENCUA.00324.A.MB1 KEYWDS SSGCID, COPII COAT GTPASE SAR1, ADP RIBOSYLATION FACTOR-LIKE GTP KEYWDS 2 BINDING PROTEIN, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS KEYWDS 3 CENTER FOR INFECTIOUS DISEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 03-APR-24 6VS4 1 REMARK REVDAT 2 06-MAR-24 6VS4 1 LINK REVDAT 1 11-MAR-20 6VS4 0 JRNL AUTH J.ABENDROTH,D.FOX III,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF ADP RIBOSYLATION FACTOR-LIKE GTP JRNL TITL 2 BINDING PROTEIN /SMALL COPII COAT GTPASE SAR1 FROM JRNL TITL 3 ENCEPHALITOZOON CUNICULI IN COMPLEX WITH GDP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 27104 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1933 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5900 - 5.7800 0.98 1975 158 0.1736 0.2420 REMARK 3 2 5.7800 - 4.5900 1.00 1861 143 0.1495 0.1942 REMARK 3 3 4.5900 - 4.0100 1.00 1848 134 0.1435 0.1701 REMARK 3 4 4.0100 - 3.6400 1.00 1794 150 0.1669 0.2093 REMARK 3 5 3.6400 - 3.3800 1.00 1804 135 0.1815 0.2275 REMARK 3 6 3.3800 - 3.1800 1.00 1795 132 0.2020 0.2654 REMARK 3 7 3.1800 - 3.0200 1.00 1780 143 0.2107 0.3047 REMARK 3 8 3.0200 - 2.8900 1.00 1763 139 0.2151 0.2671 REMARK 3 9 2.8900 - 2.7800 1.00 1762 144 0.2146 0.3053 REMARK 3 10 2.7800 - 2.6900 1.00 1758 143 0.2225 0.2739 REMARK 3 11 2.6800 - 2.6000 1.00 1746 125 0.2335 0.2909 REMARK 3 12 2.6000 - 2.5300 1.00 1788 122 0.2365 0.2956 REMARK 3 13 2.5300 - 2.4600 1.00 1772 134 0.2301 0.2953 REMARK 3 14 2.4600 - 2.4000 1.00 1725 131 0.2578 0.3276 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.301 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.696 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3613 REMARK 3 ANGLE : 0.677 4923 REMARK 3 CHIRALITY : 0.048 561 REMARK 3 PLANARITY : 0.004 646 REMARK 3 DIHEDRAL : 18.324 1297 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.7751 28.3551 148.8016 REMARK 3 T TENSOR REMARK 3 T11: 0.3640 T22: 0.4275 REMARK 3 T33: 0.4391 T12: 0.0751 REMARK 3 T13: 0.0009 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 4.5133 L22: 5.3217 REMARK 3 L33: 4.9987 L12: -6.4569 REMARK 3 L13: 5.0601 L23: -4.7958 REMARK 3 S TENSOR REMARK 3 S11: 0.3122 S12: 0.1731 S13: -0.3605 REMARK 3 S21: -0.6070 S22: -0.2733 S23: 0.3288 REMARK 3 S31: 0.4248 S32: -0.3040 S33: -0.0585 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5004 36.5352 133.3577 REMARK 3 T TENSOR REMARK 3 T11: 0.4206 T22: 0.7019 REMARK 3 T33: 0.5056 T12: -0.0498 REMARK 3 T13: 0.0773 T23: 0.0354 REMARK 3 L TENSOR REMARK 3 L11: 8.9333 L22: 4.1894 REMARK 3 L33: 0.7587 L12: 0.7466 REMARK 3 L13: -0.3553 L23: -1.4551 REMARK 3 S TENSOR REMARK 3 S11: -0.4137 S12: 0.3083 S13: -0.5006 REMARK 3 S21: 0.2537 S22: 0.4170 S23: -0.0316 REMARK 3 S31: 0.6169 S32: -1.0912 S33: 0.0572 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1333 41.1184 125.7643 REMARK 3 T TENSOR REMARK 3 T11: 0.4258 T22: 1.0477 REMARK 3 T33: 0.5504 T12: -0.0532 REMARK 3 T13: 0.0570 T23: 0.0248 REMARK 3 L TENSOR REMARK 3 L11: 3.3205 L22: 2.7312 REMARK 3 L33: 3.8364 L12: -0.5880 REMARK 3 L13: 3.1963 L23: -1.3856 REMARK 3 S TENSOR REMARK 3 S11: -0.0558 S12: 1.0694 S13: 0.2120 REMARK 3 S21: -0.0647 S22: 0.1997 S23: 0.4610 REMARK 3 S31: -0.1937 S32: -1.6359 S33: -0.1328 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 221 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2415 47.8136 125.3549 REMARK 3 T TENSOR REMARK 3 T11: 0.3569 T22: 0.5876 REMARK 3 T33: 0.5309 T12: 0.0106 REMARK 3 T13: 0.0259 T23: 0.1706 REMARK 3 L TENSOR REMARK 3 L11: 6.4383 L22: 3.0962 REMARK 3 L33: 6.0104 L12: -0.7599 REMARK 3 L13: -2.1645 L23: -0.3275 REMARK 3 S TENSOR REMARK 3 S11: -0.0020 S12: 1.0920 S13: 0.6348 REMARK 3 S21: -0.1301 S22: 0.0851 S23: -0.0657 REMARK 3 S31: -0.3598 S32: -0.2871 S33: -0.0375 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -3 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.3582 30.9799 148.2992 REMARK 3 T TENSOR REMARK 3 T11: 0.3657 T22: 0.3967 REMARK 3 T33: 0.3049 T12: 0.0057 REMARK 3 T13: 0.0477 T23: 0.0433 REMARK 3 L TENSOR REMARK 3 L11: 7.5961 L22: 9.3781 REMARK 3 L33: 5.5462 L12: -6.1763 REMARK 3 L13: -3.3600 L23: 4.6822 REMARK 3 S TENSOR REMARK 3 S11: 0.2813 S12: 0.2503 S13: 0.3721 REMARK 3 S21: -0.5792 S22: -0.1230 S23: -0.5456 REMARK 3 S31: -0.1851 S32: 0.3801 S33: -0.1082 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 32 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.1886 19.6331 134.9807 REMARK 3 T TENSOR REMARK 3 T11: 0.3728 T22: 0.5653 REMARK 3 T33: 0.4932 T12: 0.0659 REMARK 3 T13: 0.0531 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 7.5233 L22: 4.8578 REMARK 3 L33: 6.2625 L12: 0.5446 REMARK 3 L13: 1.0736 L23: 0.5694 REMARK 3 S TENSOR REMARK 3 S11: -0.1901 S12: -0.0473 S13: 0.5166 REMARK 3 S21: 0.0624 S22: 0.2234 S23: -0.5346 REMARK 3 S31: -0.6765 S32: 0.7607 S33: 0.0243 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 71 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.9153 14.6429 129.0507 REMARK 3 T TENSOR REMARK 3 T11: 0.2823 T22: 0.6560 REMARK 3 T33: 0.5358 T12: 0.0148 REMARK 3 T13: 0.0495 T23: -0.0576 REMARK 3 L TENSOR REMARK 3 L11: 5.1542 L22: 3.2909 REMARK 3 L33: 4.7628 L12: -1.3336 REMARK 3 L13: -4.3608 L23: 1.0736 REMARK 3 S TENSOR REMARK 3 S11: -0.1351 S12: 0.2033 S13: -0.3172 REMARK 3 S21: 0.0249 S22: -0.0160 S23: -0.4083 REMARK 3 S31: 0.2615 S32: 0.1916 S33: 0.0493 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 97 THROUGH 219 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.5441 7.0589 130.0322 REMARK 3 T TENSOR REMARK 3 T11: 0.3679 T22: 0.4236 REMARK 3 T33: 0.5133 T12: 0.0016 REMARK 3 T13: 0.0663 T23: -0.0868 REMARK 3 L TENSOR REMARK 3 L11: 5.1536 L22: 3.0914 REMARK 3 L33: 6.5669 L12: -0.1895 REMARK 3 L13: -0.6939 L23: 0.3580 REMARK 3 S TENSOR REMARK 3 S11: -0.2490 S12: 0.5750 S13: -0.8232 REMARK 3 S21: -0.0938 S22: 0.0589 S23: -0.0723 REMARK 3 S31: 0.4902 S32: -0.2138 S33: 0.1490 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID -1 THROUGH 6 OR REMARK 3 (RESID 7 AND (NAME N OR NAME CA OR NAME C REMARK 3 OR NAME O OR NAME CB )) OR RESID 8 REMARK 3 THROUGH 66 OR (RESID 67 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 68 THROUGH 164 OR RESID 166 REMARK 3 THROUGH 217 OR (RESID 218 THROUGH 219 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 400)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID -1 THROUGH 88 OR REMARK 3 (RESID 89 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 90 REMARK 3 THROUGH 92 OR (RESID 93 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 94 THROUGH 100 OR (RESID 101 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 102 THROUGH 125 OR REMARK 3 (RESID 126 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 127 REMARK 3 THROUGH 133 OR (RESID 134 THROUGH 135 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 136 THROUGH 164 OR REMARK 3 RESID 166 THROUGH 219 OR RESID 401)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VS4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1000246975. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27225 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.025 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.35 REMARK 200 R MERGE FOR SHELL (I) : 0.55800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.290 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MR-ROSETTA REMARK 200 STARTING MODEL: MR ROSETTA BASED ON TOP 16 HHPRED RESULTS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RIGAKUREAGENTS JCSG+ SCREEN, CONDITION REMARK 280 B10 + 10% RIGAKUREAGENTS ADDIT G7: 50% (V/V) PEG 200, 200MM REMARK 280 MGCL2, 100MM NA-CACODYLATE PH 6.5 + 10MM SPERMINE: REMARK 280 ENCUA.00324.A.MB1.PW30297 AT 12MG/ML + 5MM GDP: CRYO: 20% EG: REMARK 280 TRAY: 225442G7: PUCK TXL1-11., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 153.85500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 32.59500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.59500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 230.78250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.59500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 32.59500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 76.92750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.59500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.59500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 230.78250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 32.59500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.59500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 76.92750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 153.85500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -114.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 307.71000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 SER B 220 REMARK 465 LEU B 221 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 HIS A 89 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 93 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 101 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 126 CG CD OE1 OE2 REMARK 470 ARG A 134 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 152 CG CD OE1 OE2 REMARK 470 GLU A 171 CG CD OE1 OE2 REMARK 470 GLU A 177 CG CD OE1 OE2 REMARK 470 ARG A 178 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 206 CG CD CE NZ REMARK 470 LYS A 217 CG CD CE NZ REMARK 470 GLU A 219 CG CD OE1 OE2 REMARK 470 GLU B 7 CG CD OE1 OE2 REMARK 470 LYS B 34 CG CD CE NZ REMARK 470 HIS B 67 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 152 CG CD OE1 OE2 REMARK 470 GLU B 171 CG CD OE1 OE2 REMARK 470 GLU B 177 CG CD OE1 OE2 REMARK 470 ARG B 178 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 206 CG CD CE NZ REMARK 470 LYS B 217 CG CD CE NZ REMARK 470 LYS B 218 CG CD CE NZ REMARK 470 GLU B 219 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 48 OD1 ASP B 85 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 92 48.93 -82.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 49 OG1 REMARK 620 2 GDP A 302 O2B 81.2 REMARK 620 3 HOH A 404 O 83.3 64.4 REMARK 620 4 HOH A 410 O 101.9 78.6 141.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 49 OG1 REMARK 620 2 GDP B 303 O2B 88.4 REMARK 620 3 HOH B 401 O 167.6 89.9 REMARK 620 4 HOH B 412 O 80.4 162.1 98.1 REMARK 620 5 HOH B 418 O 88.3 83.8 79.2 82.0 REMARK 620 6 HOH B 421 O 95.6 96.0 96.8 98.9 176.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ENCUA.00324.A RELATED DB: TARGETTRACK DBREF 6VS4 A 1 221 UNP Q8SS09 SAR1_ENCCU 1 221 DBREF 6VS4 B 1 221 UNP Q8SS09 SAR1_ENCCU 1 221 SEQADV 6VS4 GLY A -3 UNP Q8SS09 EXPRESSION TAG SEQADV 6VS4 PRO A -2 UNP Q8SS09 EXPRESSION TAG SEQADV 6VS4 GLY A -1 UNP Q8SS09 EXPRESSION TAG SEQADV 6VS4 SER A 0 UNP Q8SS09 EXPRESSION TAG SEQADV 6VS4 GLY B -3 UNP Q8SS09 EXPRESSION TAG SEQADV 6VS4 PRO B -2 UNP Q8SS09 EXPRESSION TAG SEQADV 6VS4 GLY B -1 UNP Q8SS09 EXPRESSION TAG SEQADV 6VS4 SER B 0 UNP Q8SS09 EXPRESSION TAG SEQRES 1 A 225 GLY PRO GLY SER MET LEU ASP ASN ILE GLN GLU TYR LEU SEQRES 2 A 225 GLY VAL VAL LYS ALA LYS LEU THR GLU PHE TYR GLU LYS SEQRES 3 A 225 VAL PHE GLN ASN PHE VAL LYS SER LEU PHE GLY LYS PRO SEQRES 4 A 225 SER SER ILE LEU PHE LEU GLY ILE ASP ASN ALA GLY LYS SEQRES 5 A 225 THR THR LEU VAL ASN LYS LEU LYS SER ASP SER THR ASP SEQRES 6 A 225 VAL TYR MET PRO THR HIS HIS PRO SER THR SER TYR ILE SEQRES 7 A 225 GLU ILE GLY ASN LEU LYS ALA GLN VAL ILE ASP LEU GLY SEQRES 8 A 225 GLY HIS THR ALA ALA ARG LEU ALA TRP ARG ASP TYR PHE SEQRES 9 A 225 TYR ASP CYS HIS GLY ILE VAL PHE ILE VAL ASP VAL HIS SEQRES 10 A 225 ASP VAL GLU ARG PHE GLN GLU VAL ARG GLU ALA TYR GLU SEQRES 11 A 225 THR VAL LEU SER LEU GLU LYS ARG ALA PRO VAL VAL VAL SEQRES 12 A 225 LEU MET ASN LYS ILE ASP LEU GLU GLY HIS THR PRO GLU SEQRES 13 A 225 THR ALA GLU ALA ASP TYR GLN TRP LYS SER TRP LEU SER SEQRES 14 A 225 GLN GLU THR GLY ILE GLU ASN GLN GLU ASP PRO GLU ARG SEQRES 15 A 225 GLY GLN VAL VAL LYS ILE PHE TYR VAL THR ILE THR SER SEQRES 16 A 225 GLY SER ALA ASN SER ILE THR GLY PRO LEU ALA ARG ALA SEQRES 17 A 225 PHE LYS TRP LEU GLU ALA MET ILE THR TYR ASN ASN LYS SEQRES 18 A 225 LYS GLU SER LEU SEQRES 1 B 225 GLY PRO GLY SER MET LEU ASP ASN ILE GLN GLU TYR LEU SEQRES 2 B 225 GLY VAL VAL LYS ALA LYS LEU THR GLU PHE TYR GLU LYS SEQRES 3 B 225 VAL PHE GLN ASN PHE VAL LYS SER LEU PHE GLY LYS PRO SEQRES 4 B 225 SER SER ILE LEU PHE LEU GLY ILE ASP ASN ALA GLY LYS SEQRES 5 B 225 THR THR LEU VAL ASN LYS LEU LYS SER ASP SER THR ASP SEQRES 6 B 225 VAL TYR MET PRO THR HIS HIS PRO SER THR SER TYR ILE SEQRES 7 B 225 GLU ILE GLY ASN LEU LYS ALA GLN VAL ILE ASP LEU GLY SEQRES 8 B 225 GLY HIS THR ALA ALA ARG LEU ALA TRP ARG ASP TYR PHE SEQRES 9 B 225 TYR ASP CYS HIS GLY ILE VAL PHE ILE VAL ASP VAL HIS SEQRES 10 B 225 ASP VAL GLU ARG PHE GLN GLU VAL ARG GLU ALA TYR GLU SEQRES 11 B 225 THR VAL LEU SER LEU GLU LYS ARG ALA PRO VAL VAL VAL SEQRES 12 B 225 LEU MET ASN LYS ILE ASP LEU GLU GLY HIS THR PRO GLU SEQRES 13 B 225 THR ALA GLU ALA ASP TYR GLN TRP LYS SER TRP LEU SER SEQRES 14 B 225 GLN GLU THR GLY ILE GLU ASN GLN GLU ASP PRO GLU ARG SEQRES 15 B 225 GLY GLN VAL VAL LYS ILE PHE TYR VAL THR ILE THR SER SEQRES 16 B 225 GLY SER ALA ASN SER ILE THR GLY PRO LEU ALA ARG ALA SEQRES 17 B 225 PHE LYS TRP LEU GLU ALA MET ILE THR TYR ASN ASN LYS SEQRES 18 B 225 LYS GLU SER LEU HET PEG A 301 7 HET GDP A 302 28 HET MG A 303 1 HET PEG B 301 7 HET PEG B 302 7 HET GDP B 303 28 HET MG B 304 1 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 PEG 3(C4 H10 O3) FORMUL 4 GDP 2(C10 H15 N5 O11 P2) FORMUL 5 MG 2(MG 2+) FORMUL 10 HOH *87(H2 O) HELIX 1 AA1 GLY A -1 ASP A 3 5 5 HELIX 2 AA2 ASN A 4 SER A 30 1 27 HELIX 3 AA3 GLY A 47 LYS A 56 1 10 HELIX 4 AA4 THR A 90 TYR A 101 5 12 HELIX 5 AA5 ASP A 114 GLU A 116 5 3 HELIX 6 AA6 ARG A 117 GLU A 132 1 16 HELIX 7 AA7 LYS A 143 GLY A 148 5 6 HELIX 8 AA8 THR A 150 ALA A 156 1 7 HELIX 9 AA9 ASP A 157 GLY A 169 1 13 HELIX 10 AB1 ASP A 175 GLY A 179 5 5 HELIX 11 AB2 SER A 191 SER A 196 5 6 HELIX 12 AB3 GLY A 199 SER A 220 1 22 HELIX 13 AB4 PRO B -2 PHE B 32 1 35 HELIX 14 AB5 GLY B 47 LYS B 56 1 10 HELIX 15 AB6 TRP B 96 TYR B 101 5 6 HELIX 16 AB7 ASP B 114 GLU B 116 5 3 HELIX 17 AB8 ARG B 117 GLU B 132 1 16 HELIX 18 AB9 LYS B 143 GLY B 148 5 6 HELIX 19 AC1 THR B 150 ASP B 157 1 8 HELIX 20 AC2 ASP B 157 GLY B 169 1 13 HELIX 21 AC3 ASP B 175 GLY B 179 5 5 HELIX 22 AC4 SER B 191 SER B 196 5 6 HELIX 23 AC5 GLY B 199 GLU B 219 1 21 SHEET 1 AA1 7 TYR A 63 MET A 64 0 SHEET 2 AA1 7 THR A 71 ILE A 76 -1 O TYR A 73 N MET A 64 SHEET 3 AA1 7 LEU A 79 LEU A 86 -1 O LEU A 79 N ILE A 76 SHEET 4 AA1 7 SER A 36 ILE A 43 1 N SER A 36 O LYS A 80 SHEET 5 AA1 7 GLY A 105 ASP A 111 1 O VAL A 107 N LEU A 39 SHEET 6 AA1 7 VAL A 137 ASN A 142 1 O ASN A 142 N VAL A 110 SHEET 7 AA1 7 VAL A 182 TYR A 186 1 O PHE A 185 N MET A 141 SHEET 1 AA2 7 TYR B 63 MET B 64 0 SHEET 2 AA2 7 THR B 71 ILE B 76 -1 O TYR B 73 N MET B 64 SHEET 3 AA2 7 LEU B 79 LEU B 86 -1 O LEU B 79 N ILE B 76 SHEET 4 AA2 7 SER B 36 ILE B 43 1 N GLY B 42 O LEU B 86 SHEET 5 AA2 7 GLY B 105 ASP B 111 1 O VAL B 107 N LEU B 39 SHEET 6 AA2 7 VAL B 137 ASN B 142 1 O ASN B 142 N VAL B 110 SHEET 7 AA2 7 VAL B 182 TYR B 186 1 O PHE B 185 N MET B 141 LINK OG1 THR A 49 MG MG A 303 1555 1555 2.13 LINK O2B GDP A 302 MG MG A 303 1555 1555 2.34 LINK MG MG A 303 O HOH A 404 1555 1555 2.01 LINK MG MG A 303 O HOH A 410 1555 1555 1.97 LINK OG1 THR B 49 MG MG B 304 1555 1555 2.13 LINK O2B GDP B 303 MG MG B 304 1555 1555 2.16 LINK MG MG B 304 O HOH B 401 1555 1555 2.26 LINK MG MG B 304 O HOH B 412 1555 1555 1.99 LINK MG MG B 304 O HOH B 418 1555 1555 2.19 LINK MG MG B 304 O HOH B 421 1555 1555 2.01 SITE 1 AC1 4 LYS A 13 THR B 17 TYR B 20 GLY B 192 SITE 1 AC2 18 ASP A 44 ASN A 45 ALA A 46 GLY A 47 SITE 2 AC2 18 LYS A 48 THR A 49 THR A 50 ASP A 85 SITE 3 AC2 18 ASN A 142 LYS A 143 ASP A 145 LEU A 146 SITE 4 AC2 18 THR A 188 ILE A 189 THR A 190 MG A 303 SITE 5 AC2 18 HOH A 404 HOH A 410 SITE 1 AC3 4 THR A 49 GDP A 302 HOH A 404 HOH A 410 SITE 1 AC4 3 TYR A 20 GLY A 192 LYS B 13 SITE 1 AC5 4 GLU A 147 GLY A 148 HIS B 89 THR B 90 SITE 1 AC6 19 ASP B 44 ASN B 45 ALA B 46 GLY B 47 SITE 2 AC6 19 LYS B 48 THR B 49 THR B 50 ASN B 142 SITE 3 AC6 19 LYS B 143 ASP B 145 LEU B 146 THR B 188 SITE 4 AC6 19 ILE B 189 THR B 190 MG B 304 HOH B 401 SITE 5 AC6 19 HOH B 418 HOH B 421 HOH B 437 SITE 1 AC7 6 THR B 49 GDP B 303 HOH B 401 HOH B 412 SITE 2 AC7 6 HOH B 418 HOH B 421 CRYST1 65.190 65.190 307.710 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015340 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015340 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003250 0.00000