HEADER BIOSYNTHETIC PROTEIN 11-FEB-20 6VSF TITLE MYCOBACTERIUM TUBERCULOSIS DIHYDROFOLATE REDUCTASE IN COMPLEX WITH 4- TITLE 2 (3,4-DIHYDRO-2H-BENZO[B][1,4]DIOXEPIN-7-YL)-4-OXOBUTANOIC TITLE 3 ACID(FRAGMENT 16) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.5.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: FOLA, DFRA, RV2763C, MTV002.28C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS FOLATE PATHWAY, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.A.RIBEIRO,M.V.B.DIAS REVDAT 3 11-OCT-23 6VSF 1 REMARK REVDAT 2 26-AUG-20 6VSF 1 JRNL LINK REVDAT 1 15-JUL-20 6VSF 0 JRNL AUTH J.A.RIBEIRO,A.HAMMER,G.A.LIBREROS-ZUNIGA,S.M.CHAVEZ-PACHECO, JRNL AUTH 2 P.TYRAKIS,G.S.DE OLIVEIRA,T.KIRKMAN,J.EL BAKALI,S.A.ROCCO, JRNL AUTH 3 M.L.SFORCA,R.PARISE-FILHO,A.G.COYNE,T.L.BLUNDELL,C.ABELL, JRNL AUTH 4 M.V.B.DIAS JRNL TITL USING A FRAGMENT-BASED APPROACH TO IDENTIFY ALTERNATIVE JRNL TITL 2 CHEMICAL SCAFFOLDS TARGETING DIHYDROFOLATE REDUCTASE JRNL TITL 3 FROMMYCOBACTERIUM TUBERCULOSIS. JRNL REF ACS INFECT DIS. V. 6 2192 2020 JRNL REFN ESSN 2373-8227 JRNL PMID 32603583 JRNL DOI 10.1021/ACSINFECDIS.0C00263 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 21356 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.220 REMARK 3 FREE R VALUE TEST SET COUNT : 1115 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.7700 - 4.0226 1.00 2713 132 0.1608 0.1810 REMARK 3 2 4.0226 - 3.1931 1.00 2552 159 0.1372 0.1832 REMARK 3 3 3.1931 - 2.7895 1.00 2544 137 0.1605 0.1921 REMARK 3 4 2.7895 - 2.5345 1.00 2496 163 0.1655 0.2437 REMARK 3 5 2.5345 - 2.3528 0.99 2530 118 0.1666 0.2407 REMARK 3 6 2.3528 - 2.2141 0.99 2481 154 0.1773 0.2234 REMARK 3 7 2.2141 - 2.1032 0.99 2457 138 0.1879 0.2649 REMARK 3 8 2.1032 - 2.0120 0.98 2468 114 0.2042 0.2875 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2735 REMARK 3 ANGLE : 1.169 3731 REMARK 3 CHIRALITY : 0.057 386 REMARK 3 PLANARITY : 0.005 471 REMARK 3 DIHEDRAL : 19.454 1547 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 22.9742 0.3100 17.6704 REMARK 3 T TENSOR REMARK 3 T11: -0.0044 T22: -0.0023 REMARK 3 T33: -0.0060 T12: 0.0261 REMARK 3 T13: -0.0279 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 0.0057 L22: 0.0151 REMARK 3 L33: 0.0002 L12: -0.0183 REMARK 3 L13: -0.0070 L23: -0.0148 REMARK 3 S TENSOR REMARK 3 S11: -0.0112 S12: -0.0023 S13: 0.0064 REMARK 3 S21: -0.0095 S22: -0.0070 S23: -0.0387 REMARK 3 S31: 0.0234 S32: -0.0289 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VSF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1000247002. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.48 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21402 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 46.771 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.23800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 11.50 REMARK 200 R MERGE FOR SHELL (I) : 1.59600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1DF7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULFATE, 100 MM MES (2 REMARK 280 -(N-MORPHOLINO) ETHANESULFONIC ACID), PH 6.5, 10 MM COCL2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.77800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.97000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.45200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 35.97000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.77800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.45200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 THR A 0 REMARK 465 MET B -1 REMARK 465 THR B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 32 O3 PO4 B 207 1.30 REMARK 500 C10 RKY B 201 O2 GOL B 205 1.39 REMARK 500 OE1 GLU A 138 O HOH A 301 1.99 REMARK 500 CZ ARG B 32 O3 PO4 B 207 2.04 REMARK 500 O HOH B 389 O HOH B 393 2.13 REMARK 500 O HOH B 383 O HOH B 392 2.16 REMARK 500 ND1 HIS B 30 O HOH A 301 2.16 REMARK 500 O HOH B 403 O HOH B 405 2.16 REMARK 500 O HOH A 302 O HOH A 440 2.17 REMARK 500 O HOH A 301 O HOH A 439 2.19 REMARK 500 O HOH B 383 O HOH B 418 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 32 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 32 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 19 -155.62 -138.81 REMARK 500 PRO A 21 33.58 -83.83 REMARK 500 LEU A 86 48.85 -97.24 REMARK 500 PRO B 21 40.34 -81.62 REMARK 500 SER B 88 157.73 170.82 REMARK 500 ASP B 132 -164.91 -73.07 REMARK 500 ARG B 146 -8.24 -59.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 202 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 38 NE2 REMARK 620 2 HOH A 322 O 90.2 REMARK 620 3 HOH A 343 O 92.2 99.2 REMARK 620 4 HOH A 344 O 92.2 173.5 86.8 REMARK 620 5 HIS B 157 NE2 172.5 82.4 87.8 95.4 REMARK 620 6 HOH B 381 O 90.4 89.0 171.4 84.9 90.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 203 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 384 O REMARK 620 2 HIS B 38 NE2 171.7 REMARK 620 3 HOH B 319 O 79.3 96.1 REMARK 620 4 HOH B 324 O 93.7 92.5 82.8 REMARK 620 5 HOH B 338 O 85.6 87.5 90.1 172.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RKY A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RKY B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues RKY B 201 and GOL B REMARK 800 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PO4 B 207 and ARG B REMARK 800 32 DBREF 6VSF A -1 159 UNP P9WNX1 DYR_MYCTU 1 161 DBREF 6VSF B -1 159 UNP P9WNX1 DYR_MYCTU 1 161 SEQRES 1 A 161 MET THR MET VAL GLY LEU ILE TRP ALA GLN ALA THR SER SEQRES 2 A 161 GLY VAL ILE GLY ARG GLY GLY ASP ILE PRO TRP ARG LEU SEQRES 3 A 161 PRO GLU ASP GLN ALA HIS PHE ARG GLU ILE THR MET GLY SEQRES 4 A 161 HIS THR ILE VAL MET GLY ARG ARG THR TRP ASP SER LEU SEQRES 5 A 161 PRO ALA LYS VAL ARG PRO LEU PRO GLY ARG ARG ASN VAL SEQRES 6 A 161 VAL LEU SER ARG GLN ALA ASP PHE MET ALA SER GLY ALA SEQRES 7 A 161 GLU VAL VAL GLY SER LEU GLU GLU ALA LEU THR SER PRO SEQRES 8 A 161 GLU THR TRP VAL ILE GLY GLY GLY GLN VAL TYR ALA LEU SEQRES 9 A 161 ALA LEU PRO TYR ALA THR ARG CYS GLU VAL THR GLU VAL SEQRES 10 A 161 ASP ILE GLY LEU PRO ARG GLU ALA GLY ASP ALA LEU ALA SEQRES 11 A 161 PRO VAL LEU ASP GLU THR TRP ARG GLY GLU THR GLY GLU SEQRES 12 A 161 TRP ARG PHE SER ARG SER GLY LEU ARG TYR ARG LEU TYR SEQRES 13 A 161 SER TYR HIS ARG SER SEQRES 1 B 161 MET THR MET VAL GLY LEU ILE TRP ALA GLN ALA THR SER SEQRES 2 B 161 GLY VAL ILE GLY ARG GLY GLY ASP ILE PRO TRP ARG LEU SEQRES 3 B 161 PRO GLU ASP GLN ALA HIS PHE ARG GLU ILE THR MET GLY SEQRES 4 B 161 HIS THR ILE VAL MET GLY ARG ARG THR TRP ASP SER LEU SEQRES 5 B 161 PRO ALA LYS VAL ARG PRO LEU PRO GLY ARG ARG ASN VAL SEQRES 6 B 161 VAL LEU SER ARG GLN ALA ASP PHE MET ALA SER GLY ALA SEQRES 7 B 161 GLU VAL VAL GLY SER LEU GLU GLU ALA LEU THR SER PRO SEQRES 8 B 161 GLU THR TRP VAL ILE GLY GLY GLY GLN VAL TYR ALA LEU SEQRES 9 B 161 ALA LEU PRO TYR ALA THR ARG CYS GLU VAL THR GLU VAL SEQRES 10 B 161 ASP ILE GLY LEU PRO ARG GLU ALA GLY ASP ALA LEU ALA SEQRES 11 B 161 PRO VAL LEU ASP GLU THR TRP ARG GLY GLU THR GLY GLU SEQRES 12 B 161 TRP ARG PHE SER ARG SER GLY LEU ARG TYR ARG LEU TYR SEQRES 13 B 161 SER TYR HIS ARG SER HET RKY A 201 18 HET CO A 202 1 HET NAP A 203 48 HET GOL A 204 6 HET PO4 A 205 5 HET RKY B 201 18 HET RKY B 202 18 HET CO B 203 1 HET NAP B 204 48 HET GOL B 205 6 HET PO4 B 206 5 HET PO4 B 207 5 HETNAM RKY 4-(3,4-DIHYDRO-2H-1,5-BENZODIOXEPIN-7-YL)-4-OXOBUTANOIC HETNAM 2 RKY ACID HETNAM CO COBALT (II) ION HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 RKY 3(C13 H14 O5) FORMUL 4 CO 2(CO 2+) FORMUL 5 NAP 2(C21 H28 N7 O17 P3) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 7 PO4 3(O4 P 3-) FORMUL 15 HOH *293(H2 O) HELIX 1 AA1 LEU A 24 MET A 36 1 13 HELIX 2 AA2 ARG A 44 LEU A 50 1 7 HELIX 3 AA3 SER A 81 LEU A 86 5 6 HELIX 4 AA4 GLY A 96 LEU A 104 1 9 HELIX 5 AA5 PRO A 105 ALA A 107 5 3 HELIX 6 AA6 LEU B 24 MET B 36 1 13 HELIX 7 AA7 ARG B 44 LEU B 50 1 7 HELIX 8 AA8 SER B 81 LEU B 86 1 6 HELIX 9 AA9 GLY B 96 LEU B 104 1 9 HELIX 10 AB1 PRO B 105 ALA B 107 5 3 SHEET 1 AA1 8 GLU A 77 VAL A 79 0 SHEET 2 AA1 8 ARG A 61 LEU A 65 1 N VAL A 64 O GLU A 77 SHEET 3 AA1 8 THR A 39 GLY A 43 1 N ILE A 40 O VAL A 63 SHEET 4 AA1 8 THR A 91 GLY A 95 1 O TRP A 92 N THR A 39 SHEET 5 AA1 8 VAL A 2 ALA A 9 1 N GLY A 3 O VAL A 93 SHEET 6 AA1 8 ARG A 109 VAL A 115 1 O VAL A 115 N GLN A 8 SHEET 7 AA1 8 ARG A 150 HIS A 157 -1 O TYR A 154 N VAL A 112 SHEET 8 AA1 8 ARG A 136 THR A 139 -1 N GLU A 138 O SER A 155 SHEET 1 AA2 8 GLU A 77 VAL A 79 0 SHEET 2 AA2 8 ARG A 61 LEU A 65 1 N VAL A 64 O GLU A 77 SHEET 3 AA2 8 THR A 39 GLY A 43 1 N ILE A 40 O VAL A 63 SHEET 4 AA2 8 THR A 91 GLY A 95 1 O TRP A 92 N THR A 39 SHEET 5 AA2 8 VAL A 2 ALA A 9 1 N GLY A 3 O VAL A 93 SHEET 6 AA2 8 ARG A 109 VAL A 115 1 O VAL A 115 N GLN A 8 SHEET 7 AA2 8 ARG A 150 HIS A 157 -1 O TYR A 154 N VAL A 112 SHEET 8 AA2 8 ARG A 143 PHE A 144 -1 N ARG A 143 O TYR A 151 SHEET 1 AA3 2 VAL A 13 GLY A 15 0 SHEET 2 AA3 2 ALA A 126 LEU A 127 -1 O ALA A 126 N ILE A 14 SHEET 1 AA4 8 GLU B 77 VAL B 79 0 SHEET 2 AA4 8 ARG B 61 LEU B 65 1 N VAL B 64 O GLU B 77 SHEET 3 AA4 8 THR B 39 GLY B 43 1 N ILE B 40 O ARG B 61 SHEET 4 AA4 8 THR B 91 GLY B 95 1 O ILE B 94 N VAL B 41 SHEET 5 AA4 8 VAL B 2 ALA B 9 1 N GLY B 3 O VAL B 93 SHEET 6 AA4 8 ARG B 109 VAL B 115 1 O THR B 113 N GLN B 8 SHEET 7 AA4 8 ARG B 150 HIS B 157 -1 O TYR B 154 N VAL B 112 SHEET 8 AA4 8 ARG B 136 THR B 139 -1 N ARG B 136 O HIS B 157 SHEET 1 AA5 8 GLU B 77 VAL B 79 0 SHEET 2 AA5 8 ARG B 61 LEU B 65 1 N VAL B 64 O GLU B 77 SHEET 3 AA5 8 THR B 39 GLY B 43 1 N ILE B 40 O ARG B 61 SHEET 4 AA5 8 THR B 91 GLY B 95 1 O ILE B 94 N VAL B 41 SHEET 5 AA5 8 VAL B 2 ALA B 9 1 N GLY B 3 O VAL B 93 SHEET 6 AA5 8 ARG B 109 VAL B 115 1 O THR B 113 N GLN B 8 SHEET 7 AA5 8 ARG B 150 HIS B 157 -1 O TYR B 154 N VAL B 112 SHEET 8 AA5 8 ARG B 143 PHE B 144 -1 N ARG B 143 O TYR B 151 SHEET 1 AA6 2 VAL B 13 GLY B 15 0 SHEET 2 AA6 2 ALA B 126 LEU B 127 -1 O ALA B 126 N ILE B 14 LINK NE2 HIS A 38 CO CO A 202 1555 1555 2.17 LINK CO CO A 202 O HOH A 322 1555 1555 2.26 LINK CO CO A 202 O HOH A 343 1555 1555 2.18 LINK CO CO A 202 O HOH A 344 1555 1555 2.08 LINK CO CO A 202 NE2 HIS B 157 1555 1555 2.07 LINK CO CO A 202 O HOH B 381 1555 1555 2.16 LINK O HOH A 384 CO CO B 203 1555 1555 1.86 LINK NE2 HIS B 38 CO CO B 203 1555 1555 2.05 LINK CO CO B 203 O HOH B 319 1555 1555 2.14 LINK CO CO B 203 O HOH B 324 1555 1555 2.33 LINK CO CO B 203 O HOH B 338 1555 1555 2.25 CISPEP 1 ARG A 55 PRO A 56 0 -8.00 CISPEP 2 GLY A 95 GLY A 96 0 -0.46 CISPEP 3 ARG B 55 PRO B 56 0 -3.62 CISPEP 4 GLY B 95 GLY B 96 0 1.10 SITE 1 AC1 7 PHE A 31 ARG A 32 LEU A 50 LEU A 57 SITE 2 AC1 7 ARG A 60 NAP A 203 HOH A 340 SITE 1 AC2 6 HIS A 38 HOH A 322 HOH A 343 HOH A 344 SITE 2 AC2 6 HIS B 157 HOH B 381 SITE 1 AC3 36 TRP A 6 ALA A 7 ILE A 14 GLY A 15 SITE 2 AC3 36 ARG A 16 GLY A 18 ASP A 19 ILE A 20 SITE 3 AC3 36 GLY A 43 ARG A 44 ARG A 45 THR A 46 SITE 4 AC3 36 LEU A 65 SER A 66 ARG A 67 GLN A 68 SITE 5 AC3 36 GLY A 80 ILE A 94 GLY A 96 GLY A 97 SITE 6 AC3 36 GLN A 98 VAL A 99 TYR A 100 LEU A 102 SITE 7 AC3 36 RKY A 201 HOH A 316 HOH A 330 HOH A 346 SITE 8 AC3 36 HOH A 355 HOH A 365 HOH A 366 HOH A 394 SITE 9 AC3 36 HOH A 405 HOH A 407 HOH A 409 HOH A 417 SITE 1 AC4 7 ALA A 7 TRP A 22 ARG A 23 LEU A 24 SITE 2 AC4 7 ASP A 27 GLN A 28 HOH A 334 SITE 1 AC5 2 ARG A 44 ARG A 45 SITE 1 AC6 8 ASP B 19 ILE B 20 GLN B 28 SER B 49 SITE 2 AC6 8 PRO B 51 RKY B 201 GOL B 205 HOH B 337 SITE 1 AC7 5 HOH A 384 HIS B 38 HOH B 319 HOH B 324 SITE 2 AC7 5 HOH B 338 SITE 1 AC8 34 TRP B 6 ALA B 7 ILE B 14 GLY B 15 SITE 2 AC8 34 ARG B 16 GLY B 18 ASP B 19 ILE B 20 SITE 3 AC8 34 GLY B 43 ARG B 44 ARG B 45 THR B 46 SITE 4 AC8 34 LEU B 65 SER B 66 ARG B 67 GLN B 68 SITE 5 AC8 34 GLY B 80 ILE B 94 GLY B 96 GLY B 97 SITE 6 AC8 34 GLN B 98 VAL B 99 TYR B 100 LEU B 102 SITE 7 AC8 34 RKY B 201 HOH B 328 HOH B 335 HOH B 337 SITE 8 AC8 34 HOH B 345 HOH B 353 HOH B 364 HOH B 370 SITE 9 AC8 34 HOH B 377 HOH B 384 SITE 1 AC9 4 ARG B 44 ARG B 45 HOH B 302 HOH B 330 SITE 1 AD1 12 ILE B 20 TRP B 22 LEU B 24 ASP B 27 SITE 2 AD1 12 GLN B 28 PHE B 31 ARG B 32 LEU B 50 SITE 3 AD1 12 ARG B 60 ILE B 94 RKY B 202 NAP B 204 SITE 1 AD2 13 ARG A 23 PRO A 51 HOH A 452 GLN B 28 SITE 2 AD2 13 ALA B 29 HIS B 30 PHE B 31 GLU B 33 SITE 3 AD2 13 ILE B 34 THR B 35 MET B 36 PRO B 58 SITE 4 AD2 13 RKY B 201 CRYST1 61.556 70.904 71.940 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016245 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014104 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013900 0.00000