HEADER IMMUNE SYSTEM 11-FEB-20 6VSR TITLE CRYSTAL STRUCTURE OF MACAQUE ANTI-HIV-1 ANTIBODY RM20F COMPND MOL_ID: 1; COMPND 2 MOLECULE: RM20F FAB HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RM20F FAB LIGHT CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 3 ORGANISM_TAXID: 9544; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 8 ORGANISM_TAXID: 9544; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS HIV, ANTIBODY, NON-HUMAN PRIMATES, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.OYEN,M.YUAN,I.A.WILSON REVDAT 2 11-OCT-23 6VSR 1 REMARK REVDAT 1 16-SEP-20 6VSR 0 JRNL AUTH C.A.COTTRELL,J.VAN SCHOOTEN,C.A.BOWMAN,M.YUAN,D.OYEN,M.SHIN, JRNL AUTH 2 R.MORPURGO,P.VAN DER WOUDE,M.VAN BREEMEN,J.L.TORRES,R.PATEL, JRNL AUTH 3 J.GROSS,L.M.SEWALL,J.COPPS,G.OZOROWSKI,B.NOGAL,D.SOK, JRNL AUTH 4 E.G.RAKASZ,C.LABRANCHE,V.VIGDOROVICH,S.CHRISTLEY, JRNL AUTH 5 D.G.CARNATHAN,D.N.SATHER,D.MONTEFIORI,G.SILVESTRI, JRNL AUTH 6 D.R.BURTON,J.P.MOORE,I.A.WILSON,R.W.SANDERS,A.B.WARD, JRNL AUTH 7 M.J.VAN GILS JRNL TITL MAPPING THE IMMUNOGENIC LANDSCAPE OF NEAR-NATIVE HIV-1 JRNL TITL 2 ENVELOPE TRIMERS IN NON-HUMAN PRIMATES. JRNL REF PLOS PATHOG. V. 16 08753 2020 JRNL REFN ESSN 1553-7374 JRNL PMID 32866207 JRNL DOI 10.1371/JOURNAL.PPAT.1008753 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 27996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 1374 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.7210 - 4.6856 0.96 2810 140 0.1976 0.2243 REMARK 3 2 4.6856 - 3.7202 0.99 2759 139 0.1482 0.1829 REMARK 3 3 3.7202 - 3.2503 0.98 2666 159 0.1740 0.2590 REMARK 3 4 3.2503 - 2.9533 0.99 2709 131 0.1980 0.2283 REMARK 3 5 2.9533 - 2.7417 1.00 2722 133 0.2097 0.2430 REMARK 3 6 2.7417 - 2.5801 1.00 2712 136 0.2207 0.2857 REMARK 3 7 2.5801 - 2.4509 1.00 2675 146 0.2362 0.3003 REMARK 3 8 2.4509 - 2.3442 0.98 2638 144 0.2382 0.2661 REMARK 3 9 2.3442 - 2.2540 0.99 2673 139 0.2364 0.2749 REMARK 3 10 2.2540 - 2.1762 0.83 2258 107 0.2444 0.2672 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3438 REMARK 3 ANGLE : 0.551 4702 REMARK 3 CHIRALITY : 0.044 527 REMARK 3 PLANARITY : 0.003 602 REMARK 3 DIHEDRAL : 12.346 2046 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9700 -9.8689 -28.2543 REMARK 3 T TENSOR REMARK 3 T11: 0.1493 T22: 0.2060 REMARK 3 T33: 0.1635 T12: -0.0350 REMARK 3 T13: 0.0069 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 4.5993 L22: 3.9349 REMARK 3 L33: 2.2552 L12: -3.2970 REMARK 3 L13: 1.7302 L23: -1.2959 REMARK 3 S TENSOR REMARK 3 S11: -0.0182 S12: 0.0516 S13: -0.3221 REMARK 3 S21: -0.0372 S22: 0.0622 S23: 0.3956 REMARK 3 S31: 0.0667 S32: -0.3198 S33: 0.0037 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 34 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3290 -3.4850 -27.8439 REMARK 3 T TENSOR REMARK 3 T11: 0.1037 T22: 0.1177 REMARK 3 T33: 0.1217 T12: -0.0352 REMARK 3 T13: 0.0062 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 2.0757 L22: 3.5998 REMARK 3 L33: 3.6076 L12: -1.4556 REMARK 3 L13: -0.3654 L23: -0.9643 REMARK 3 S TENSOR REMARK 3 S11: -0.0229 S12: 0.0499 S13: -0.0580 REMARK 3 S21: -0.0012 S22: 0.0302 S23: 0.0009 REMARK 3 S31: 0.1306 S32: -0.0167 S33: 0.0159 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1504 -23.7925 -3.3247 REMARK 3 T TENSOR REMARK 3 T11: 0.1253 T22: 0.1040 REMARK 3 T33: 0.1469 T12: -0.0053 REMARK 3 T13: -0.0112 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 5.9809 L22: 1.2072 REMARK 3 L33: 3.0698 L12: -0.4094 REMARK 3 L13: -2.7695 L23: 0.1869 REMARK 3 S TENSOR REMARK 3 S11: -0.1273 S12: -0.1903 S13: -0.0728 REMARK 3 S21: 0.0023 S22: 0.0608 S23: -0.0072 REMARK 3 S31: 0.2421 S32: 0.0904 S33: 0.0667 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 202 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3851 -28.0572 -7.7786 REMARK 3 T TENSOR REMARK 3 T11: 0.1689 T22: 0.2318 REMARK 3 T33: 0.2144 T12: -0.0210 REMARK 3 T13: 0.0071 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 7.1876 L22: 0.3048 REMARK 3 L33: 8.2127 L12: -0.3304 REMARK 3 L13: -7.5563 L23: 0.4251 REMARK 3 S TENSOR REMARK 3 S11: -0.3909 S12: 0.3192 S13: -0.5737 REMARK 3 S21: -0.0088 S22: -0.0315 S23: 0.0199 REMARK 3 S31: 0.5352 S32: -0.1492 S33: 0.3942 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4300 8.7631 -4.5075 REMARK 3 T TENSOR REMARK 3 T11: 0.3208 T22: 0.3102 REMARK 3 T33: 0.1820 T12: -0.1020 REMARK 3 T13: -0.0123 T23: -0.0358 REMARK 3 L TENSOR REMARK 3 L11: 7.0613 L22: 2.1281 REMARK 3 L33: 7.4056 L12: 2.5923 REMARK 3 L13: -5.9987 L23: -3.8442 REMARK 3 S TENSOR REMARK 3 S11: 0.2013 S12: -0.1561 S13: -0.1110 REMARK 3 S21: 0.4081 S22: -0.3462 S23: -0.2397 REMARK 3 S31: -0.4765 S32: 0.0985 S33: 0.1635 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 26 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6668 8.6673 -13.1891 REMARK 3 T TENSOR REMARK 3 T11: 0.1709 T22: 0.1143 REMARK 3 T33: 0.1373 T12: -0.0094 REMARK 3 T13: 0.0155 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 1.9555 L22: 3.2262 REMARK 3 L33: 4.4854 L12: 0.1616 REMARK 3 L13: -1.1096 L23: -0.1572 REMARK 3 S TENSOR REMARK 3 S11: 0.1312 S12: -0.1400 S13: 0.0720 REMARK 3 S21: 0.1040 S22: 0.0602 S23: 0.1855 REMARK 3 S31: -0.2507 S32: -0.0419 S33: -0.1693 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 102 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.4968 -2.0609 7.0583 REMARK 3 T TENSOR REMARK 3 T11: 0.2311 T22: 0.2025 REMARK 3 T33: 0.1363 T12: -0.0619 REMARK 3 T13: 0.0035 T23: -0.0263 REMARK 3 L TENSOR REMARK 3 L11: 1.3859 L22: 5.0267 REMARK 3 L33: 6.9185 L12: 2.6098 REMARK 3 L13: -2.9609 L23: -5.8360 REMARK 3 S TENSOR REMARK 3 S11: 0.1280 S12: -0.3032 S13: -0.0041 REMARK 3 S21: -0.0389 S22: -0.3473 S23: 0.1088 REMARK 3 S31: 0.0968 S32: 0.6127 S33: 0.1890 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 114 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0615 -24.5156 8.0176 REMARK 3 T TENSOR REMARK 3 T11: 0.2147 T22: 0.2023 REMARK 3 T33: 0.1575 T12: 0.0331 REMARK 3 T13: 0.0558 T23: 0.0469 REMARK 3 L TENSOR REMARK 3 L11: 1.8963 L22: 4.7638 REMARK 3 L33: 2.1785 L12: -1.8799 REMARK 3 L13: -0.8123 L23: 2.1131 REMARK 3 S TENSOR REMARK 3 S11: -0.2714 S12: -0.2199 S13: -0.2072 REMARK 3 S21: 0.3316 S22: 0.2892 S23: 0.0372 REMARK 3 S31: 0.2850 S32: 0.2130 S33: -0.0022 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 151 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9584 -24.2376 10.6868 REMARK 3 T TENSOR REMARK 3 T11: 0.1948 T22: 0.2864 REMARK 3 T33: 0.2051 T12: 0.0471 REMARK 3 T13: 0.0160 T23: 0.0599 REMARK 3 L TENSOR REMARK 3 L11: 1.2881 L22: 4.3457 REMARK 3 L33: 2.0153 L12: -1.0368 REMARK 3 L13: -0.1590 L23: 0.2828 REMARK 3 S TENSOR REMARK 3 S11: -0.1573 S12: -0.2867 S13: -0.3175 REMARK 3 S21: 0.5133 S22: 0.2152 S23: 0.0978 REMARK 3 S31: 0.3162 S32: 0.0670 S33: -0.0491 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VSR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1000247020. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28053 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.176 REMARK 200 RESOLUTION RANGE LOW (A) : 36.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5CSZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE RM20F FAB WAS CRYSTALLIZED FROM A REMARK 280 SOLUTION CONTAINING 10 MG/ML PROTEIN IN 1X TBS WITH A WELL REMARK 280 SOLUTION CONTAINING 0.1M MES, PH 5.0 AND 2M AMMONIUM SULFATE. REMARK 280 THE CRYSTALS WERE CRYOPROTECTED BY SOAKING IN A WELL SOLUTION REMARK 280 SUPPLEMENTED WITH 30% ETHYLENE GLYCOL, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.72950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.53400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.82300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.53400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.72950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.82300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 105 REMARK 465 GLY A 106 REMARK 465 GLY A 107 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 104 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 130 CE NZ REMARK 470 LYS A 142 CD CE NZ REMARK 470 GLU B 17 CG CD OE1 OE2 REMARK 470 LYS B 45 CG CD CE NZ REMARK 470 GLU B 123 CG CD OE1 OE2 REMARK 470 LYS B 126 CG CD CE NZ REMARK 470 GLU B 143 CG CD OE1 OE2 REMARK 470 GLU B 213 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 481 O HOH A 546 2.12 REMARK 500 OG SER A 201 O HOH A 401 2.13 REMARK 500 OG SER A 201 O HOH A 402 2.14 REMARK 500 O4 SO4 A 303 O HOH A 403 2.16 REMARK 500 O HOH B 500 O HOH B 503 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 111 2.68 82.15 REMARK 500 SER A 145 122.42 -170.80 REMARK 500 ASP A 157 75.08 66.19 REMARK 500 LYS B 16 -3.50 74.79 REMARK 500 SER B 51 -52.91 79.25 REMARK 500 ALA B 84 -177.32 -175.82 REMARK 500 ASN B 138 81.83 52.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 563 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH B 525 DISTANCE = 5.95 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6VOS RELATED DB: PDB REMARK 900 RELATED ID: 6VOR RELATED DB: PDB DBREF 6VSR A 1 227 PDB 6VSR 6VSR 1 227 DBREF 6VSR B 1 213 PDB 6VSR 6VSR 1 213 SEQRES 1 A 227 GLN VAL GLN LEU VAL GLN SER GLY GLY ALA LEU VAL GLN SEQRES 2 A 227 PRO GLY ALA SER LEU ARG LEU SER CYS ALA ALA SER GLU SEQRES 3 A 227 PHE SER PHE SER THR HIS ASP MET HIS TRP VAL ARG GLN SEQRES 4 A 227 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER GLY ILE ASN SEQRES 5 A 227 ILE HIS GLY GLY THR TYR TYR PRO ASP SER VAL LYS GLY SEQRES 6 A 227 ARG PHE THR ILE SER ARG ASP SER ALA LYS ASN SER LEU SEQRES 7 A 227 TYR LEU GLN MET SER SER LEU ARG ASP GLY ASP THR ALA SEQRES 8 A 227 VAL TYR PHE CYS ALA ARG GLY GLY LYS PRO ILE TYR TYR SEQRES 9 A 227 SER GLY GLY TYR PRO SER TRP TYR PHE ASP LEU TRP GLY SEQRES 10 A 227 PRO GLY THR PRO ILE THR ILE SER SER ALA SER THR LYS SEQRES 11 A 227 GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER SEQRES 12 A 227 THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS SEQRES 13 A 227 ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER SEQRES 14 A 227 GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL SEQRES 15 A 227 LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL SEQRES 16 A 227 THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE SEQRES 17 A 227 CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP SEQRES 18 A 227 LYS ARG VAL GLU PRO LYS SEQRES 1 B 213 ASP VAL VAL MET THR GLN SER PRO GLY PHE ARG SER VAL SEQRES 2 B 213 THR LEU LYS GLU LYS VAL SER ILE THR CYS GLN ALA SER SEQRES 3 B 213 GLN THR ILE GLY THR ASN LEU HIS TRP TYR GLN GLN LYS SEQRES 4 B 213 PRO GLY GLN SER PRO LYS LEU LEU ILE LYS TYR SER SER SEQRES 5 B 213 GLN SER ILE SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 B 213 GLY SER GLY THR ASP PHE THR LEU THR ILE ASN SER LEU SEQRES 7 B 213 GLU ALA ASP ASP ALA ALA THR TYR TYR CYS GLN GLN THR SEQRES 8 B 213 ASN SER PHE PRO CYS THR PHE GLY PRO GLY THR LYS VAL SEQRES 9 B 213 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 B 213 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 B 213 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 B 213 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 B 213 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 B 213 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 B 213 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 B 213 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 B 213 PHE ASN ARG GLY GLU HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 B 301 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *288(H2 O) HELIX 1 AA1 SER A 28 HIS A 32 5 5 HELIX 2 AA2 SER A 73 ASN A 76 5 4 HELIX 3 AA3 ARG A 86 THR A 90 5 5 HELIX 4 AA4 SER A 140 LYS A 142 5 3 HELIX 5 AA5 SER A 169 ALA A 171 5 3 HELIX 6 AA6 SER A 200 LEU A 202 5 3 HELIX 7 AA7 LYS A 214 ASN A 217 5 4 HELIX 8 AA8 GLU B 79 ALA B 83 5 5 HELIX 9 AA9 SER B 121 SER B 127 1 7 HELIX 10 AB1 LYS B 183 GLU B 187 1 5 SHEET 1 AA1 4 GLN A 3 GLN A 6 0 SHEET 2 AA1 4 LEU A 18 SER A 25 -1 O ALA A 23 N VAL A 5 SHEET 3 AA1 4 SER A 77 MET A 82 -1 O MET A 82 N LEU A 18 SHEET 4 AA1 4 PHE A 67 ASP A 72 -1 N THR A 68 O GLN A 81 SHEET 1 AA2 6 ALA A 10 VAL A 12 0 SHEET 2 AA2 6 THR A 120 ILE A 124 1 O THR A 123 N VAL A 12 SHEET 3 AA2 6 ALA A 91 GLY A 98 -1 N ALA A 91 O ILE A 122 SHEET 4 AA2 6 MET A 34 GLN A 39 -1 N VAL A 37 O PHE A 94 SHEET 5 AA2 6 LEU A 45 ILE A 51 -1 O GLU A 46 N ARG A 38 SHEET 6 AA2 6 THR A 57 TYR A 58 -1 O TYR A 58 N GLY A 50 SHEET 1 AA3 4 ALA A 10 VAL A 12 0 SHEET 2 AA3 4 THR A 120 ILE A 124 1 O THR A 123 N VAL A 12 SHEET 3 AA3 4 ALA A 91 GLY A 98 -1 N ALA A 91 O ILE A 122 SHEET 4 AA3 4 PHE A 113 TRP A 116 -1 O LEU A 115 N ARG A 97 SHEET 1 AA4 4 SER A 133 LEU A 137 0 SHEET 2 AA4 4 THR A 148 TYR A 158 -1 O LEU A 154 N PHE A 135 SHEET 3 AA4 4 TYR A 189 PRO A 198 -1 O VAL A 197 N ALA A 149 SHEET 4 AA4 4 VAL A 176 THR A 178 -1 N HIS A 177 O VAL A 194 SHEET 1 AA5 4 THR A 144 SER A 145 0 SHEET 2 AA5 4 THR A 148 TYR A 158 -1 O THR A 148 N SER A 145 SHEET 3 AA5 4 TYR A 189 PRO A 198 -1 O VAL A 197 N ALA A 149 SHEET 4 AA5 4 VAL A 182 LEU A 183 -1 N VAL A 182 O SER A 190 SHEET 1 AA6 3 THR A 164 TRP A 167 0 SHEET 2 AA6 3 ILE A 208 HIS A 213 -1 O ASN A 210 N SER A 166 SHEET 3 AA6 3 THR A 218 ARG A 223 -1 O VAL A 220 N VAL A 211 SHEET 1 AA7 4 MET B 4 SER B 7 0 SHEET 2 AA7 4 VAL B 19 ALA B 25 -1 O GLN B 24 N THR B 5 SHEET 3 AA7 4 ASP B 70 ILE B 75 -1 O LEU B 73 N ILE B 21 SHEET 4 AA7 4 PHE B 62 GLY B 66 -1 N SER B 63 O THR B 74 SHEET 1 AA8 6 PHE B 10 THR B 14 0 SHEET 2 AA8 6 THR B 102 LYS B 107 1 O LYS B 107 N VAL B 13 SHEET 3 AA8 6 ALA B 84 GLN B 90 -1 N ALA B 84 O VAL B 104 SHEET 4 AA8 6 LEU B 33 GLN B 38 -1 N TYR B 36 O TYR B 87 SHEET 5 AA8 6 LYS B 45 LYS B 49 -1 O LYS B 45 N GLN B 37 SHEET 6 AA8 6 GLN B 53 SER B 54 -1 O GLN B 53 N LYS B 49 SHEET 1 AA9 4 PHE B 10 THR B 14 0 SHEET 2 AA9 4 THR B 102 LYS B 107 1 O LYS B 107 N VAL B 13 SHEET 3 AA9 4 ALA B 84 GLN B 90 -1 N ALA B 84 O VAL B 104 SHEET 4 AA9 4 THR B 97 PHE B 98 -1 O THR B 97 N GLN B 90 SHEET 1 AB1 4 SER B 114 PHE B 118 0 SHEET 2 AB1 4 THR B 129 PHE B 139 -1 O LEU B 135 N PHE B 116 SHEET 3 AB1 4 TYR B 173 SER B 182 -1 O LEU B 179 N VAL B 132 SHEET 4 AB1 4 SER B 159 VAL B 163 -1 N SER B 162 O SER B 176 SHEET 1 AB2 4 ALA B 153 LEU B 154 0 SHEET 2 AB2 4 LYS B 145 VAL B 150 -1 N VAL B 150 O ALA B 153 SHEET 3 AB2 4 VAL B 191 THR B 197 -1 O GLU B 195 N GLN B 147 SHEET 4 AB2 4 VAL B 205 ASN B 210 -1 O VAL B 205 N VAL B 196 SSBOND 1 CYS A 22 CYS A 95 1555 1555 2.05 SSBOND 2 CYS A 153 CYS A 209 1555 1555 2.03 SSBOND 3 CYS B 23 CYS B 88 1555 1555 2.04 SSBOND 4 CYS B 134 CYS B 194 1555 1555 2.04 CISPEP 1 PHE A 159 PRO A 160 0 -4.13 CISPEP 2 GLU A 161 PRO A 162 0 -4.66 CISPEP 3 SER B 7 PRO B 8 0 -3.27 CISPEP 4 PHE B 94 PRO B 95 0 -3.79 CISPEP 5 TYR B 140 PRO B 141 0 0.93 SITE 1 AC1 7 ARG A 71 ASP A 72 SER A 73 HOH A 420 SITE 2 AC1 7 HOH A 487 HOH A 506 THR B 109 SITE 1 AC2 5 PHE A 27 SER A 28 THR A 31 HIS A 32 SITE 2 AC2 5 HOH A 439 SITE 1 AC3 5 ASN A 52 HIS A 54 GLY A 56 HOH A 403 SITE 2 AC3 5 HOH A 476 SITE 1 AC4 5 ARG B 11 LYS B 18 VAL B 19 SER B 20 SITE 2 AC4 5 HOH B 401 CRYST1 61.459 75.646 115.068 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016271 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013219 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008691 0.00000