HEADER IMMUNE SYSTEM 12-FEB-20 6VTC TITLE P53-SPECIFIC T CELL RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CELL RECEPTOR 1A2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: P53-SPECIFIC T CELL RECEPTOR, B-CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TCR COMPLEX, MHC, HLA, ADOPTIVE CELL THERAPY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.WU,D.T.GALLAGHER,R.GOWTHAMAN,B.G.PIERCE,R.A.MARIUZZA REVDAT 3 11-OCT-23 6VTC 1 REMARK REVDAT 2 24-JUN-20 6VTC 1 JRNL REVDAT 1 17-JUN-20 6VTC 0 JRNL AUTH D.WU,D.T.GALLAGHER,R.GOWTHAMAN,B.G.PIERCE,R.A.MARIUZZA JRNL TITL STRUCTURAL BASIS FOR OLIGOCLONAL T CELL RECOGNITION OF A JRNL TITL 2 SHARED P53 CANCER NEOANTIGEN. JRNL REF NAT COMMUN V. 11 2908 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32518267 JRNL DOI 10.1038/S41467-020-16755-Y REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 42266 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2172 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3079 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 153 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3433 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 391 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.02000 REMARK 3 B22 (A**2) : -0.42000 REMARK 3 B33 (A**2) : -2.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.130 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.302 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3523 ; 0.016 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4799 ; 2.162 ; 1.639 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 437 ; 7.632 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 184 ;34.629 ;23.152 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 546 ;16.016 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;16.371 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 459 ; 0.172 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2753 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 204 REMARK 3 ORIGIN FOR THE GROUP (A): 5.3707 16.6191 5.7285 REMARK 3 T TENSOR REMARK 3 T11: 0.0277 T22: 0.1063 REMARK 3 T33: 0.0855 T12: 0.0075 REMARK 3 T13: -0.0046 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 0.1216 L22: 0.6569 REMARK 3 L33: 0.2042 L12: 0.1658 REMARK 3 L13: 0.0828 L23: -0.1357 REMARK 3 S TENSOR REMARK 3 S11: 0.0471 S12: 0.0406 S13: -0.0164 REMARK 3 S21: 0.0138 S22: -0.0330 S23: -0.0250 REMARK 3 S31: 0.0548 S32: 0.0975 S33: -0.0141 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 243 REMARK 3 ORIGIN FOR THE GROUP (A): 9.3113 24.7963 22.9948 REMARK 3 T TENSOR REMARK 3 T11: 0.0066 T22: 0.1045 REMARK 3 T33: 0.0987 T12: -0.0178 REMARK 3 T13: -0.0013 T23: 0.0116 REMARK 3 L TENSOR REMARK 3 L11: 0.0532 L22: 0.4401 REMARK 3 L33: 0.6982 L12: -0.1362 REMARK 3 L13: 0.1572 L23: -0.2646 REMARK 3 S TENSOR REMARK 3 S11: -0.0156 S12: 0.0196 S13: 0.0004 REMARK 3 S21: 0.0446 S22: -0.0430 S23: 0.0024 REMARK 3 S31: -0.0432 S32: 0.0681 S33: 0.0586 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6VTC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1000247046. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44465 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 31.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3UTP, 3VXT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 4000, 0.2 M LISO4, 0.1 M REMARK 280 MES, PH 6.0, VAPOR DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.18450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.34250 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.18450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.34250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 THR A 50 REMARK 465 TYR A 51 REMARK 465 SER A 52 REMARK 465 SER A 53 REMARK 465 GLY A 54 REMARK 465 PRO A 205 REMARK 465 GLU A 206 REMARK 465 SER A 207 REMARK 465 SER A 208 REMARK 465 MET B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 41 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 42 CE NZ REMARK 470 TYR A 49 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 101 CG CD CE NZ REMARK 470 LYS A 130 CD CE NZ REMARK 470 GLN A 145 CG CD OE1 NE2 REMARK 470 LYS A 152 CG CD CE NZ REMARK 470 ARG A 167 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 193 CG OD1 ND2 REMARK 470 GLU A 198 CG CD OE1 OE2 REMARK 470 GLU B 1 CG CD OE1 OE2 REMARK 470 GLU B 62 CG CD OE1 OE2 REMARK 470 LYS B 117 CG CD CE NZ REMARK 470 LYS B 163 CG CD CE NZ REMARK 470 GLU B 218 CG CD OE1 OE2 REMARK 470 GLU B 221 CG CD OE1 OE2 REMARK 470 ARG B 241 CZ NH1 NH2 REMARK 470 ASP B 243 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 151 O HOH A 301 2.00 REMARK 500 N ASN A 181 O HOH A 302 2.04 REMARK 500 O SER A 204 O HOH A 303 2.05 REMARK 500 O HOH B 307 O HOH B 397 2.05 REMARK 500 O HOH A 309 O HOH A 421 2.11 REMARK 500 CE MET A 34 O HOH B 495 2.13 REMARK 500 O HOH B 352 O HOH B 488 2.13 REMARK 500 O TYR A 49 N ASN A 55 2.16 REMARK 500 O HOH B 308 O HOH B 328 2.17 REMARK 500 O HOH A 393 O HOH A 433 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 15 CD GLU A 15 OE2 -0.082 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 60 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 60 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 CYS A 162 N - CA - CB ANGL. DEV. = -12.9 DEGREES REMARK 500 ARG B 72 CD - NE - CZ ANGL. DEV. = 8.6 DEGREES REMARK 500 ARG B 72 NE - CZ - NH2 ANGL. DEV. = 4.7 DEGREES REMARK 500 TYR B 187 CB - CA - C ANGL. DEV. = -12.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 40 -130.79 38.88 REMARK 500 LEU A 47 -66.56 -104.45 REMARK 500 LYS A 56 -98.87 -98.69 REMARK 500 TYR A 100 52.92 -150.15 REMARK 500 ASP A 120 58.97 -152.82 REMARK 500 SER A 131 149.77 95.06 REMARK 500 SER A 132 -11.13 160.16 REMARK 500 LYS A 182 124.74 -29.89 REMARK 500 ALA B 2 -142.42 -141.13 REMARK 500 PHE B 74 89.43 -150.65 REMARK 500 SER B 87 -177.97 -173.51 REMARK 500 HIS B 153 74.86 -113.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 1 ALA B 2 144.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6VQO RELATED DB: PDB REMARK 900 RELATED ID: 6VR1 RELATED DB: PDB REMARK 900 RELATED ID: 6VR5 RELATED DB: PDB REMARK 900 RELATED ID: 6VRM RELATED DB: PDB REMARK 900 RELATED ID: 6VRN RELATED DB: PDB DBREF 6VTC A 1 208 PDB 6VTC 6VTC 1 208 DBREF 6VTC B 0 243 PDB 6VTC 6VTC 0 243 SEQRES 1 A 208 MET LYS GLU VAL GLU GLN ASP PRO GLY PRO LEU SER VAL SEQRES 2 A 208 PRO GLU GLY ALA ILE VAL SER LEU ASN CYS THR TYR SER SEQRES 3 A 208 ASN SER ALA PHE GLN TYR PHE MET TRP TYR ARG GLN TYR SEQRES 4 A 208 SER ARG LYS GLY PRO GLU LEU LEU MET TYR THR TYR SER SEQRES 5 A 208 SER GLY ASN LYS GLU ASP GLY ARG PHE THR ALA GLN VAL SEQRES 6 A 208 ASP LYS SER SER LYS TYR ILE SER LEU PHE ILE ARG ASP SEQRES 7 A 208 SER GLN PRO SER ASP SER ALA THR TYR LEU CYS ALA MET SEQRES 8 A 208 SER GLY LEU LYS GLU ASP SER SER TYR LYS LEU ILE PHE SEQRES 9 A 208 GLY SER GLY THR ARG LEU LEU VAL ARG PRO ASP ILE GLN SEQRES 10 A 208 ASN PRO ASP PRO ALA VAL TYR GLN LEU ARG ASP SER LYS SEQRES 11 A 208 SER SER ASP LYS SER VAL CYS LEU PHE THR ASP PHE ASP SEQRES 12 A 208 SER GLN THR ASN VAL SER GLN SER LYS ASP SER ASP VAL SEQRES 13 A 208 TYR ILE THR ASP LYS CYS VAL LEU ASP MET ARG SER MET SEQRES 14 A 208 ASP PHE LYS SER ASN SER ALA VAL ALA TRP SER ASN LYS SEQRES 15 A 208 SER ASP PHE ALA CYS ALA ASN ALA PHE ASN ASN SER ILE SEQRES 16 A 208 ILE PRO GLU ASP THR PHE PHE PRO SER PRO GLU SER SER SEQRES 1 B 244 MET GLU ALA GLN VAL THR GLN ASN PRO ARG TYR LEU ILE SEQRES 2 B 244 THR VAL THR GLY LYS LYS LEU THR VAL THR CYS SER GLN SEQRES 3 B 244 ASN MET ASN HIS GLU TYR MET SER TRP TYR ARG GLN ASP SEQRES 4 B 244 PRO GLY LEU GLY LEU ARG GLN ILE TYR TYR SER MET ASN SEQRES 5 B 244 VAL GLU VAL THR ASP LYS GLY ASP VAL PRO GLU GLY TYR SEQRES 6 B 244 LYS VAL SER ARG LYS GLU LYS ARG ASN PHE PRO LEU ILE SEQRES 7 B 244 LEU GLU SER PRO SER PRO ASN GLN THR SER LEU TYR PHE SEQRES 8 B 244 CYS ALA SER SER ILE GLN GLN GLY ALA ASP THR GLN TYR SEQRES 9 B 244 PHE GLY PRO GLY THR ARG LEU THR VAL LEU GLU ASP LEU SEQRES 10 B 244 LYS ASN VAL PHE PRO PRO GLU VAL ALA VAL PHE GLU PRO SEQRES 11 B 244 SER GLU ALA GLU ILE SER HIS THR GLN LYS ALA THR LEU SEQRES 12 B 244 VAL CYS LEU ALA THR GLY PHE TYR PRO ASP HIS VAL GLU SEQRES 13 B 244 LEU SER TRP TRP VAL ASN GLY LYS GLU VAL HIS SER GLY SEQRES 14 B 244 VAL CYS THR ASP PRO GLN PRO LEU LYS GLU GLN PRO ALA SEQRES 15 B 244 LEU ASN ASP SER ARG TYR ALA LEU SER SER ARG LEU ARG SEQRES 16 B 244 VAL SER ALA THR PHE TRP GLN ASN PRO ARG ASN HIS PHE SEQRES 17 B 244 ARG CYS GLN VAL GLN PHE TYR GLY LEU SER GLU ASN ASP SEQRES 18 B 244 GLU TRP THR GLN ASP ARG ALA LYS PRO VAL THR GLN ILE SEQRES 19 B 244 VAL SER ALA GLU ALA TRP GLY ARG ALA ASP FORMUL 3 HOH *391(H2 O) HELIX 1 AA1 GLN A 80 SER A 84 5 5 HELIX 2 AA2 ARG A 167 ASP A 170 5 4 HELIX 3 AA3 ALA A 186 PHE A 191 1 6 HELIX 4 AA4 SER B 82 THR B 86 5 5 HELIX 5 AA5 SER B 130 GLN B 138 1 9 HELIX 6 AA6 ALA B 197 ASN B 202 1 6 SHEET 1 AA1 5 VAL A 4 GLU A 5 0 SHEET 2 AA1 5 VAL A 19 TYR A 25 -1 O THR A 24 N GLU A 5 SHEET 3 AA1 5 TYR A 71 ILE A 76 -1 O LEU A 74 N LEU A 21 SHEET 4 AA1 5 PHE A 61 ASP A 66 -1 N GLN A 64 O SER A 73 SHEET 5 AA1 5 GLU A 57 ASP A 58 -1 N ASP A 58 O PHE A 61 SHEET 1 AA2 5 LEU A 11 PRO A 14 0 SHEET 2 AA2 5 THR A 108 ARG A 113 1 O ARG A 113 N VAL A 13 SHEET 3 AA2 5 ALA A 85 SER A 92 -1 N ALA A 85 O LEU A 110 SHEET 4 AA2 5 TYR A 32 GLN A 38 -1 N GLN A 38 O THR A 86 SHEET 5 AA2 5 GLU A 45 MET A 48 -1 O MET A 48 N TRP A 35 SHEET 1 AA3 4 LEU A 11 PRO A 14 0 SHEET 2 AA3 4 THR A 108 ARG A 113 1 O ARG A 113 N VAL A 13 SHEET 3 AA3 4 ALA A 85 SER A 92 -1 N ALA A 85 O LEU A 110 SHEET 4 AA3 4 ILE A 103 PHE A 104 -1 O ILE A 103 N MET A 91 SHEET 1 AA4 4 ALA A 122 ARG A 127 0 SHEET 2 AA4 4 SER A 135 THR A 140 -1 O LEU A 138 N TYR A 124 SHEET 3 AA4 4 PHE A 171 SER A 180 -1 O ALA A 178 N CYS A 137 SHEET 4 AA4 4 VAL A 156 ILE A 158 -1 N TYR A 157 O TRP A 179 SHEET 1 AA5 4 ALA A 122 ARG A 127 0 SHEET 2 AA5 4 SER A 135 THR A 140 -1 O LEU A 138 N TYR A 124 SHEET 3 AA5 4 PHE A 171 SER A 180 -1 O ALA A 178 N CYS A 137 SHEET 4 AA5 4 CYS A 162 MET A 166 -1 N MET A 166 O PHE A 171 SHEET 1 AA6 4 VAL B 4 ASN B 7 0 SHEET 2 AA6 4 LEU B 19 GLN B 25 -1 O THR B 22 N ASN B 7 SHEET 3 AA6 4 LEU B 76 LEU B 78 -1 O LEU B 76 N VAL B 21 SHEET 4 AA6 4 LYS B 65 VAL B 66 -1 N LYS B 65 O ILE B 77 SHEET 1 AA7 6 TYR B 10 VAL B 14 0 SHEET 2 AA7 6 THR B 108 LEU B 113 1 O ARG B 109 N LEU B 11 SHEET 3 AA7 6 SER B 87 SER B 94 -1 N TYR B 89 O THR B 108 SHEET 4 AA7 6 TYR B 31 ASP B 38 -1 N SER B 33 O ALA B 92 SHEET 5 AA7 6 GLY B 42 ASN B 51 -1 O SER B 49 N MET B 32 SHEET 6 AA7 6 VAL B 54 LYS B 57 -1 O ASP B 56 N TYR B 48 SHEET 1 AA8 4 TYR B 10 VAL B 14 0 SHEET 2 AA8 4 THR B 108 LEU B 113 1 O ARG B 109 N LEU B 11 SHEET 3 AA8 4 SER B 87 SER B 94 -1 N TYR B 89 O THR B 108 SHEET 4 AA8 4 GLN B 102 PHE B 104 -1 O TYR B 103 N SER B 93 SHEET 1 AA9 4 GLU B 123 PHE B 127 0 SHEET 2 AA9 4 LYS B 139 PHE B 149 -1 O VAL B 143 N PHE B 127 SHEET 3 AA9 4 TYR B 187 SER B 196 -1 O LEU B 189 N ALA B 146 SHEET 4 AA9 4 VAL B 169 THR B 171 -1 N CYS B 170 O ARG B 192 SHEET 1 AB1 4 GLU B 123 PHE B 127 0 SHEET 2 AB1 4 LYS B 139 PHE B 149 -1 O VAL B 143 N PHE B 127 SHEET 3 AB1 4 TYR B 187 SER B 196 -1 O LEU B 189 N ALA B 146 SHEET 4 AB1 4 LEU B 176 LYS B 177 -1 N LEU B 176 O ALA B 188 SHEET 1 AB2 4 LYS B 163 VAL B 165 0 SHEET 2 AB2 4 VAL B 154 VAL B 160 -1 N VAL B 160 O LYS B 163 SHEET 3 AB2 4 HIS B 206 PHE B 213 -1 O GLN B 210 N SER B 157 SHEET 4 AB2 4 GLN B 232 TRP B 239 -1 O ALA B 238 N PHE B 207 SSBOND 1 CYS A 23 CYS A 89 1555 1555 2.03 SSBOND 2 CYS A 137 CYS A 187 1555 1555 2.07 SSBOND 3 CYS A 162 CYS B 170 1555 1555 2.32 SSBOND 4 CYS B 23 CYS B 91 1555 1555 1.93 SSBOND 5 CYS B 144 CYS B 209 1555 1555 2.02 CISPEP 1 GLY A 9 PRO A 10 0 2.16 CISPEP 2 ASN B 7 PRO B 8 0 2.05 CISPEP 3 TYR B 150 PRO B 151 0 6.59 CRYST1 41.123 106.369 112.685 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024317 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009401 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008874 0.00000