HEADER OXIDOREDUCTASE 13-FEB-20 6VTN TITLE CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM DIHYDROOROTATE TITLE 2 DEHYDROGENASE BOUND WITH INHIBITOR DSM557 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DHODEHASE,DIHYDROOROTATE OXIDASE; COMPND 5 EC: 1.3.5.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM (ISOLATE 3D7); SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: ISOLATE 3D7; SOURCE 5 GENE: PFF0160C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS OXIDOREDUCTASE, MITOCHONDRIA, ALPHA-BETA BARREL EXPDTA X-RAY DIFFRACTION AUTHOR X.DENG,M.PHILLIPS REVDAT 3 11-OCT-23 6VTN 1 REMARK REVDAT 2 27-MAY-20 6VTN 1 JRNL REVDAT 1 22-APR-20 6VTN 0 JRNL AUTH S.KOKKONDA,X.DENG,K.L.WHITE,F.EL MAZOUNI,J.WHITE, JRNL AUTH 2 D.M.SHACKLEFORD,K.KATNENI,F.C.K.CHIU,H.BARKER,J.MCLAREN, JRNL AUTH 3 E.CRIGHTON,G.CHEN,I.ANGULO-BARTUREN,M.B.JIMENEZ-DIAZ, JRNL AUTH 4 S.FERRER,L.HUERTAS-VALENTIN,M.S.MARTINEZ-MARTINEZ, JRNL AUTH 5 M.J.LAFUENTE-MONASTERIO,R.CHITTIMALLA,S.P.SHAHI,S.WITTLIN, JRNL AUTH 6 D.WATERSON,J.N.BURROWS,D.MATTHEWS,D.TOMCHICK,P.K.RATHOD, JRNL AUTH 7 M.J.PALMER,S.A.CHARMAN,M.A.PHILLIPS JRNL TITL LEAD OPTIMIZATION OF A PYRROLE-BASED DIHYDROOROTATE JRNL TITL 2 DEHYDROGENASE INHIBITOR SERIES FOR THE TREATMENT OF MALARIA. JRNL REF J.MED.CHEM. V. 63 4929 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32248693 JRNL DOI 10.1021/ACS.JMEDCHEM.0C00311 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 44.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 79.2 REMARK 3 NUMBER OF REFLECTIONS : 21071 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1503 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.2000 - 5.0000 0.93 2264 177 0.1953 0.2246 REMARK 3 2 5.0000 - 3.9800 0.93 2252 170 0.1637 0.1635 REMARK 3 3 3.9800 - 3.4700 0.93 2251 169 0.1850 0.2019 REMARK 3 4 3.4700 - 3.1600 0.93 2217 173 0.2100 0.2279 REMARK 3 5 3.1600 - 2.9300 0.93 2243 170 0.2187 0.2341 REMARK 3 6 2.9300 - 2.7600 0.93 2224 171 0.2319 0.2553 REMARK 3 7 2.7600 - 2.6200 0.92 2204 163 0.2438 0.2465 REMARK 3 8 2.6200 - 2.5100 0.70 1681 124 0.2414 0.2683 REMARK 3 9 2.5100 - 2.4100 0.44 1060 82 0.2301 0.2365 REMARK 3 10 2.4100 - 2.3300 0.30 711 52 0.2540 0.3081 REMARK 3 11 2.3300 - 2.2500 0.19 453 31 0.2607 0.3031 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.574 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3092 REMARK 3 ANGLE : 0.609 4173 REMARK 3 CHIRALITY : 0.043 462 REMARK 3 PLANARITY : 0.003 529 REMARK 3 DIHEDRAL : 9.131 1851 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 162 THROUGH 205 ) REMARK 3 ORIGIN FOR THE GROUP (A): 94.3321 -32.8256 15.9542 REMARK 3 T TENSOR REMARK 3 T11: 0.6600 T22: 0.3460 REMARK 3 T33: 0.2918 T12: 0.1133 REMARK 3 T13: 0.0515 T23: 0.0335 REMARK 3 L TENSOR REMARK 3 L11: 2.0926 L22: 0.5930 REMARK 3 L33: 3.3572 L12: -0.7289 REMARK 3 L13: -1.5835 L23: 1.4068 REMARK 3 S TENSOR REMARK 3 S11: -0.1034 S12: -0.3544 S13: -0.4563 REMARK 3 S21: 0.7156 S22: 0.0507 S23: 0.1570 REMARK 3 S31: 0.7113 S32: 0.2447 S33: 0.0355 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 206 THROUGH 282 ) REMARK 3 ORIGIN FOR THE GROUP (A): 87.4449 -24.6865 5.2833 REMARK 3 T TENSOR REMARK 3 T11: 0.3523 T22: 0.3023 REMARK 3 T33: 0.2218 T12: 0.1594 REMARK 3 T13: 0.0780 T23: -0.0588 REMARK 3 L TENSOR REMARK 3 L11: 1.2598 L22: 1.9825 REMARK 3 L33: 1.3250 L12: -0.7699 REMARK 3 L13: -0.4178 L23: 0.9303 REMARK 3 S TENSOR REMARK 3 S11: 0.0023 S12: 0.1053 S13: -0.2010 REMARK 3 S21: 0.1871 S22: -0.1023 S23: 0.2797 REMARK 3 S31: 0.1274 S32: -0.1028 S33: 0.1286 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 283 THROUGH 375 ) REMARK 3 ORIGIN FOR THE GROUP (A): 88.6509 -14.3255 -3.5442 REMARK 3 T TENSOR REMARK 3 T11: 0.3565 T22: 0.4350 REMARK 3 T33: 0.2133 T12: 0.3114 REMARK 3 T13: 0.0291 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 1.5019 L22: 1.6605 REMARK 3 L33: 0.3453 L12: -0.7613 REMARK 3 L13: -0.1815 L23: 0.1642 REMARK 3 S TENSOR REMARK 3 S11: 0.0797 S12: 0.2150 S13: 0.0095 REMARK 3 S21: -0.1139 S22: -0.2141 S23: 0.1810 REMARK 3 S31: -0.1630 S32: -0.1871 S33: -0.0250 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 376 THROUGH 424 ) REMARK 3 ORIGIN FOR THE GROUP (A): 100.5485 -16.2053 -14.3038 REMARK 3 T TENSOR REMARK 3 T11: 0.5328 T22: 0.5770 REMARK 3 T33: 0.2393 T12: 0.3007 REMARK 3 T13: 0.0998 T23: 0.0802 REMARK 3 L TENSOR REMARK 3 L11: 5.2454 L22: 2.2851 REMARK 3 L33: 2.3365 L12: 2.1984 REMARK 3 L13: -1.3673 L23: 0.8009 REMARK 3 S TENSOR REMARK 3 S11: 0.1598 S12: 0.6468 S13: 0.2667 REMARK 3 S21: -0.6417 S22: -0.1297 S23: -0.1942 REMARK 3 S31: -0.2012 S32: 0.1734 S33: -0.0533 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 425 THROUGH 449 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.6038 -20.3554 -8.6915 REMARK 3 T TENSOR REMARK 3 T11: 0.4391 T22: 0.8218 REMARK 3 T33: 0.5922 T12: 0.2930 REMARK 3 T13: -0.1416 T23: -0.1832 REMARK 3 L TENSOR REMARK 3 L11: 1.3270 L22: 1.6690 REMARK 3 L33: 1.7856 L12: 0.8749 REMARK 3 L13: -1.5218 L23: -1.2146 REMARK 3 S TENSOR REMARK 3 S11: 0.1178 S12: 0.4004 S13: 0.2464 REMARK 3 S21: -0.2713 S22: 0.0576 S23: 0.8373 REMARK 3 S31: -0.0984 S32: -0.7086 S33: -0.1875 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 450 THROUGH 474 ) REMARK 3 ORIGIN FOR THE GROUP (A): 72.2879 -24.0376 7.3882 REMARK 3 T TENSOR REMARK 3 T11: 0.3835 T22: 0.6431 REMARK 3 T33: 0.6814 T12: 0.2127 REMARK 3 T13: 0.1318 T23: -0.1412 REMARK 3 L TENSOR REMARK 3 L11: 3.4177 L22: 1.3388 REMARK 3 L33: 5.1298 L12: -0.4710 REMARK 3 L13: -2.2448 L23: 0.2836 REMARK 3 S TENSOR REMARK 3 S11: 0.0743 S12: -0.0671 S13: -0.1949 REMARK 3 S21: 0.2325 S22: -0.0496 S23: 0.6871 REMARK 3 S31: -0.2094 S32: -0.7116 S33: 0.0091 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 475 THROUGH 537 ) REMARK 3 ORIGIN FOR THE GROUP (A): 77.1771 -32.8964 -0.6427 REMARK 3 T TENSOR REMARK 3 T11: 0.2656 T22: 0.5294 REMARK 3 T33: 0.6151 T12: 0.0940 REMARK 3 T13: 0.0226 T23: -0.2305 REMARK 3 L TENSOR REMARK 3 L11: 0.9039 L22: 1.8352 REMARK 3 L33: 2.8529 L12: -0.0168 REMARK 3 L13: 0.3093 L23: -0.0590 REMARK 3 S TENSOR REMARK 3 S11: 0.1106 S12: 0.3566 S13: -0.4935 REMARK 3 S21: -0.0880 S22: -0.1566 S23: 0.7439 REMARK 3 S31: 0.1674 S32: -0.4721 S33: -0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 538 THROUGH 566 ) REMARK 3 ORIGIN FOR THE GROUP (A): 83.2647 -44.7628 -5.1414 REMARK 3 T TENSOR REMARK 3 T11: 0.4949 T22: 0.5128 REMARK 3 T33: 0.6971 T12: 0.0485 REMARK 3 T13: 0.0120 T23: -0.2552 REMARK 3 L TENSOR REMARK 3 L11: 0.6988 L22: 4.3151 REMARK 3 L33: 6.9276 L12: 0.7994 REMARK 3 L13: 0.9605 L23: 2.7677 REMARK 3 S TENSOR REMARK 3 S11: 0.0561 S12: 0.4716 S13: -0.7998 REMARK 3 S21: -0.3006 S22: -0.1079 S23: 0.4770 REMARK 3 S31: 0.7572 S32: -0.1371 S33: 0.0152 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VTN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1000247045. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4-5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26640 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 42.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3I65 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M AMMONIUM SULFATE, 0.1 M TRI-NA REMARK 280 CITRATE, 25% PEG4000, 16% GLYCEROL, 10 MM DTT, PH 5.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.98633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 91.97267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 45.98633 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 91.97267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 139 REMARK 465 GLY A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 HIS A 146 REMARK 465 ALA A 147 REMARK 465 GLU A 148 REMARK 465 ASN A 149 REMARK 465 LEU A 150 REMARK 465 TYR A 151 REMARK 465 PHE A 152 REMARK 465 GLN A 153 REMARK 465 GLY A 154 REMARK 465 ALA A 155 REMARK 465 ASP A 156 REMARK 465 PRO A 157 REMARK 465 PHE A 158 REMARK 465 GLU A 159 REMARK 465 SER A 160 REMARK 465 TYR A 161 REMARK 465 SER A 567 REMARK 465 LYS A 568 REMARK 465 SER A 569 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 213 -126.76 53.87 REMARK 500 ASP A 228 76.35 -110.41 REMARK 500 CYS A 233 58.41 -147.78 REMARK 500 TYR A 528 -68.75 -142.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RL7 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ORO A 1003 DBREF 6VTN A 158 569 UNP Q08210 PYRD_PLAF7 158 569 SEQADV 6VTN MET A 139 UNP Q08210 INITIATING METHIONINE SEQADV 6VTN GLY A 140 UNP Q08210 EXPRESSION TAG SEQADV 6VTN HIS A 141 UNP Q08210 EXPRESSION TAG SEQADV 6VTN HIS A 142 UNP Q08210 EXPRESSION TAG SEQADV 6VTN HIS A 143 UNP Q08210 EXPRESSION TAG SEQADV 6VTN HIS A 144 UNP Q08210 EXPRESSION TAG SEQADV 6VTN HIS A 145 UNP Q08210 EXPRESSION TAG SEQADV 6VTN HIS A 146 UNP Q08210 EXPRESSION TAG SEQADV 6VTN ALA A 147 UNP Q08210 EXPRESSION TAG SEQADV 6VTN GLU A 148 UNP Q08210 EXPRESSION TAG SEQADV 6VTN ASN A 149 UNP Q08210 EXPRESSION TAG SEQADV 6VTN LEU A 150 UNP Q08210 EXPRESSION TAG SEQADV 6VTN TYR A 151 UNP Q08210 EXPRESSION TAG SEQADV 6VTN PHE A 152 UNP Q08210 EXPRESSION TAG SEQADV 6VTN GLN A 153 UNP Q08210 EXPRESSION TAG SEQADV 6VTN GLY A 154 UNP Q08210 EXPRESSION TAG SEQADV 6VTN ALA A 155 UNP Q08210 EXPRESSION TAG SEQADV 6VTN ASP A 156 UNP Q08210 EXPRESSION TAG SEQADV 6VTN PRO A 157 UNP Q08210 EXPRESSION TAG SEQADV 6VTN A UNP Q08210 SER 384 DELETION SEQADV 6VTN A UNP Q08210 THR 385 DELETION SEQADV 6VTN A UNP Q08210 TYR 386 DELETION SEQADV 6VTN A UNP Q08210 ASN 387 DELETION SEQADV 6VTN A UNP Q08210 GLU 388 DELETION SEQADV 6VTN A UNP Q08210 ASP 389 DELETION SEQADV 6VTN A UNP Q08210 ASN 390 DELETION SEQADV 6VTN A UNP Q08210 LYS 391 DELETION SEQADV 6VTN A UNP Q08210 ILE 392 DELETION SEQADV 6VTN A UNP Q08210 VAL 393 DELETION SEQADV 6VTN A UNP Q08210 GLU 394 DELETION SEQADV 6VTN A UNP Q08210 LYS 395 DELETION SEQADV 6VTN A UNP Q08210 LYS 396 DELETION SEQADV 6VTN A UNP Q08210 ASN 397 DELETION SEQADV 6VTN A UNP Q08210 ASN 398 DELETION SEQADV 6VTN A UNP Q08210 PHE 399 DELETION SEQADV 6VTN A UNP Q08210 ASN 400 DELETION SEQADV 6VTN A UNP Q08210 LYS 401 DELETION SEQADV 6VTN A UNP Q08210 ASN 402 DELETION SEQADV 6VTN A UNP Q08210 ASN 403 DELETION SEQADV 6VTN A UNP Q08210 SER 404 DELETION SEQADV 6VTN A UNP Q08210 HIS 405 DELETION SEQADV 6VTN A UNP Q08210 MET 406 DELETION SEQADV 6VTN A UNP Q08210 MET 407 DELETION SEQADV 6VTN A UNP Q08210 LYS 408 DELETION SEQADV 6VTN A UNP Q08210 ASP 409 DELETION SEQADV 6VTN A UNP Q08210 ALA 410 DELETION SEQADV 6VTN A UNP Q08210 LYS 411 DELETION SEQADV 6VTN A UNP Q08210 ASP 412 DELETION SEQADV 6VTN A UNP Q08210 ASN 413 DELETION SEQRES 1 A 401 MET GLY HIS HIS HIS HIS HIS HIS ALA GLU ASN LEU TYR SEQRES 2 A 401 PHE GLN GLY ALA ASP PRO PHE GLU SER TYR ASN PRO GLU SEQRES 3 A 401 PHE PHE LEU TYR ASP ILE PHE LEU LYS PHE CYS LEU LYS SEQRES 4 A 401 TYR ILE ASP GLY GLU ILE CYS HIS ASP LEU PHE LEU LEU SEQRES 5 A 401 LEU GLY LYS TYR ASN ILE LEU PRO TYR ASP THR SER ASN SEQRES 6 A 401 ASP SER ILE TYR ALA CYS THR ASN ILE LYS HIS LEU ASP SEQRES 7 A 401 PHE ILE ASN PRO PHE GLY VAL ALA ALA GLY PHE ASP LYS SEQRES 8 A 401 ASN GLY VAL CYS ILE ASP SER ILE LEU LYS LEU GLY PHE SEQRES 9 A 401 SER PHE ILE GLU ILE GLY THR ILE THR PRO ARG GLY GLN SEQRES 10 A 401 THR GLY ASN ALA LYS PRO ARG ILE PHE ARG ASP VAL GLU SEQRES 11 A 401 SER ARG SER ILE ILE ASN SER CYS GLY PHE ASN ASN MET SEQRES 12 A 401 GLY CYS ASP LYS VAL THR GLU ASN LEU ILE LEU PHE ARG SEQRES 13 A 401 LYS ARG GLN GLU GLU ASP LYS LEU LEU SER LYS HIS ILE SEQRES 14 A 401 VAL GLY VAL SER ILE GLY LYS ASN LYS ASP THR VAL ASN SEQRES 15 A 401 ILE VAL ASP ASP LEU LYS TYR CYS ILE ASN LYS ILE GLY SEQRES 16 A 401 ARG TYR ALA ASP TYR ILE ALA ILE ASN VAL SER SER PRO SEQRES 17 A 401 ASN THR PRO GLY LEU ARG ASP ASN GLN GLU ALA GLY LYS SEQRES 18 A 401 LEU LYS ASN ILE ILE LEU SER VAL LYS GLU GLU ILE ASP SEQRES 19 A 401 ASN LEU GLU LYS ASN ASN ILE MET ASN ASP GLU PHE LEU SEQRES 20 A 401 TRP PHE ASN THR THR LYS LYS LYS PRO LEU VAL PHE VAL SEQRES 21 A 401 LYS LEU ALA PRO ASP LEU ASN GLN GLU GLN LYS LYS GLU SEQRES 22 A 401 ILE ALA ASP VAL LEU LEU GLU THR ASN ILE ASP GLY MET SEQRES 23 A 401 ILE ILE SER ASN THR THR THR GLN ILE ASN ASP ILE LYS SEQRES 24 A 401 SER PHE GLU ASN LYS LYS GLY GLY VAL SER GLY ALA LYS SEQRES 25 A 401 LEU LYS ASP ILE SER THR LYS PHE ILE CYS GLU MET TYR SEQRES 26 A 401 ASN TYR THR ASN LYS GLN ILE PRO ILE ILE ALA SER GLY SEQRES 27 A 401 GLY ILE PHE SER GLY LEU ASP ALA LEU GLU LYS ILE GLU SEQRES 28 A 401 ALA GLY ALA SER VAL CYS GLN LEU TYR SER CYS LEU VAL SEQRES 29 A 401 PHE ASN GLY MET LYS SER ALA VAL GLN ILE LYS ARG GLU SEQRES 30 A 401 LEU ASN HIS LEU LEU TYR GLN ARG GLY TYR TYR ASN LEU SEQRES 31 A 401 LYS GLU ALA ILE GLY ARG LYS HIS SER LYS SER HET RL7 A1001 40 HET FMN A1002 49 HET ORO A1003 14 HETNAM RL7 N-CYCLOPROPYL-4-{[2-FLUORO-4-(TRIFLUOROMETHYL) HETNAM 2 RL7 PHENYL]METHYL}-3-METHYL-1H-PYRROLE-2-CARBOXAMIDE HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM ORO OROTIC ACID HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 RL7 C17 H16 F4 N2 O FORMUL 3 FMN C17 H21 N4 O9 P FORMUL 4 ORO C5 H4 N2 O4 FORMUL 5 HOH *72(H2 O) HELIX 1 AA1 ASN A 162 ILE A 179 1 18 HELIX 2 AA2 ASP A 180 TYR A 194 1 15 HELIX 3 AA3 CYS A 233 LYS A 239 1 7 HELIX 4 AA4 CYS A 283 ASP A 300 1 18 HELIX 5 AA5 LYS A 301 SER A 304 5 4 HELIX 6 AA6 ASN A 320 GLY A 333 1 14 HELIX 7 AA7 ARG A 334 ALA A 336 5 3 HELIX 8 AA8 LEU A 351 GLN A 355 5 5 HELIX 9 AA9 GLU A 356 GLU A 375 1 20 HELIX 10 AB1 ASN A 381 TRP A 416 1 6 HELIX 11 AB2 ASN A 435 THR A 449 1 15 HELIX 12 AB3 ILE A 466 GLU A 470 5 5 HELIX 13 AB4 LEU A 481 THR A 496 1 16 HELIX 14 AB5 SER A 510 GLY A 521 1 12 HELIX 15 AB6 TYR A 528 GLY A 535 1 8 HELIX 16 AB7 LYS A 537 ARG A 553 1 17 HELIX 17 AB8 LEU A 558 ILE A 562 5 5 SHEET 1 AA1 2 THR A 210 ILE A 212 0 SHEET 2 AA1 2 LEU A 215 PHE A 217 -1 O PHE A 217 N THR A 210 SHEET 1 AA2 9 PHE A 221 VAL A 223 0 SHEET 2 AA2 9 PHE A 244 ILE A 250 1 O GLU A 246 N VAL A 223 SHEET 3 AA2 9 ILE A 307 ILE A 312 1 O SER A 311 N ILE A 247 SHEET 4 AA2 9 TYR A 338 ASN A 342 1 O ALA A 340 N ILE A 312 SHEET 5 AA2 9 LEU A 425 LEU A 430 1 O PHE A 427 N ILE A 339 SHEET 6 AA2 9 GLY A 453 ILE A 456 1 O ILE A 455 N VAL A 428 SHEET 7 AA2 9 ILE A 502 SER A 505 1 O ILE A 503 N MET A 454 SHEET 8 AA2 9 VAL A 524 LEU A 527 1 O GLN A 526 N ALA A 504 SHEET 9 AA2 9 PHE A 221 VAL A 223 1 N GLY A 222 O LEU A 527 SHEET 1 AA3 2 ARG A 253 GLN A 255 0 SHEET 2 AA3 2 ASN A 280 GLY A 282 -1 O ASN A 280 N GLN A 255 SHEET 1 AA4 3 ILE A 263 ASP A 266 0 SHEET 2 AA4 3 SER A 271 ASN A 274 -1 O SER A 271 N ASP A 266 SHEET 3 AA4 3 GLY A 475 GLY A 478 -1 O SER A 477 N ILE A 272 CISPEP 1 GLY A 248 THR A 249 0 2.68 CISPEP 2 LYS A 260 PRO A 261 0 -4.08 CISPEP 3 ILE A 456 SER A 457 0 13.36 SITE 1 AC1 12 TYR A 168 PHE A 171 LEU A 172 CYS A 175 SITE 2 AC1 12 GLY A 181 HIS A 185 LEU A 187 LEU A 191 SITE 3 AC1 12 ILE A 263 ARG A 265 VAL A 532 GLY A 535 SITE 1 AC2 23 ALA A 224 ALA A 225 GLY A 226 LYS A 229 SITE 2 AC2 23 THR A 249 ASN A 274 ASN A 342 LYS A 429 SITE 3 AC2 23 SER A 457 ASN A 458 SER A 477 GLY A 478 SITE 4 AC2 23 LEU A 481 SER A 505 GLY A 506 GLY A 507 SITE 5 AC2 23 TYR A 528 SER A 529 ORO A1003 HOH A1103 SITE 6 AC2 23 HOH A1114 HOH A1125 HOH A1132 SITE 1 AC3 11 LYS A 229 ASN A 274 CYS A 276 GLY A 277 SITE 2 AC3 11 PHE A 278 ASN A 342 SER A 345 ASN A 347 SITE 3 AC3 11 ASN A 458 THR A 459 FMN A1002 CRYST1 84.751 84.751 137.959 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011799 0.006812 0.000000 0.00000 SCALE2 0.000000 0.013625 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007249 0.00000