HEADER HYDROLASE 13-FEB-20 6VTV TITLE CRYSTAL STRUCTURE OF PUUD GAMMA-GLUTAMYL-GAMMA-AMINOBUTYRATE HYDROLASE TITLE 2 FROM E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMMA-GLUTAMYL-GAMMA-AMINOBUTYRATE HYDROLASE PUUD; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GAMMA-GLU-GABA HYDROLASE; COMPND 5 EC: 3.5.1.94; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: PUUD, YCJL, B1298, JW1291; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: -GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG68SBPTEV KEYWDS STRUCTURAL GENOMICS, CSGID, CENTER FOR STRUCTURAL GENOMICS OF KEYWDS 2 INFECTIOUS DISEASES, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 3 INFECTIOUS DISEASES, HYDROLASE, PUTRESCINE, PUTRESCINE UTILIZATION KEYWDS 4 PATHWAY, GAMMA-GLUTAMYL-GAMMA-AMINOBUTYRATE, PEPTIDASE C26 FAMILY, KEYWDS 5 ALPHA/BETA PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,E.EVDOKIMOVA,R.DI LEO,A.SAVCHENKO,A.JOACHIMIAK, AUTHOR 2 K.J.F.SATCHELL,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 2 11-OCT-23 6VTV 1 LINK REVDAT 1 26-FEB-20 6VTV 0 JRNL AUTH P.J.STOGIOS JRNL TITL PUUD GAMMA-GLUTAMYL-GAMMA-AMINOBUTYRATE HYDROLASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15_3448 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 29431 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1913 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.9300 - 4.9400 0.99 2208 152 0.1740 0.2048 REMARK 3 2 4.9400 - 3.9300 0.99 2115 148 0.1292 0.1708 REMARK 3 3 3.9300 - 3.4400 0.98 2058 138 0.1437 0.1979 REMARK 3 4 3.4400 - 3.1200 0.98 2052 140 0.1727 0.1995 REMARK 3 5 3.1200 - 2.9000 0.98 2048 149 0.1842 0.2354 REMARK 3 6 2.9000 - 2.7300 0.96 2002 139 0.1887 0.2080 REMARK 3 7 2.7300 - 2.5900 0.95 1961 133 0.1904 0.2580 REMARK 3 8 2.5900 - 2.4800 0.93 1938 135 0.1910 0.2417 REMARK 3 9 2.4800 - 2.3800 0.93 1912 126 0.2039 0.2537 REMARK 3 10 2.3800 - 2.3000 0.92 1891 142 0.2015 0.2521 REMARK 3 11 2.3000 - 2.2300 0.92 1887 131 0.2044 0.2398 REMARK 3 12 2.2300 - 2.1700 0.91 1883 132 0.2095 0.2621 REMARK 3 13 2.1700 - 2.1100 0.89 1822 127 0.2244 0.3091 REMARK 3 14 2.1100 - 2.0600 0.84 1741 121 0.2333 0.3182 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.216 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.151 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3989 REMARK 3 ANGLE : 0.538 5437 REMARK 3 CHIRALITY : 0.044 603 REMARK 3 PLANARITY : 0.004 728 REMARK 3 DIHEDRAL : 19.653 1497 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 10:24) REMARK 3 ORIGIN FOR THE GROUP (A): 42.4766 34.9497 40.2478 REMARK 3 T TENSOR REMARK 3 T11: 0.1527 T22: 0.2511 REMARK 3 T33: 0.2933 T12: -0.0182 REMARK 3 T13: 0.0378 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 6.3758 L22: 7.1565 REMARK 3 L33: 4.3125 L12: 2.0046 REMARK 3 L13: 2.5808 L23: 2.1828 REMARK 3 S TENSOR REMARK 3 S11: -0.0045 S12: -0.0618 S13: -0.0026 REMARK 3 S21: 0.2181 S22: 0.1803 S23: -0.2589 REMARK 3 S31: -0.0971 S32: 0.2012 S33: -0.2253 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 25:88) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8071 36.6448 38.9397 REMARK 3 T TENSOR REMARK 3 T11: 0.1727 T22: 0.1590 REMARK 3 T33: 0.1869 T12: -0.0041 REMARK 3 T13: -0.0171 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 3.6170 L22: 1.9268 REMARK 3 L33: 1.5703 L12: 0.1017 REMARK 3 L13: -0.9619 L23: 0.1356 REMARK 3 S TENSOR REMARK 3 S11: -0.0668 S12: 0.0449 S13: 0.0262 REMARK 3 S21: -0.0522 S22: 0.0716 S23: 0.0679 REMARK 3 S31: 0.0417 S32: 0.0385 S33: -0.0142 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 89:110) REMARK 3 ORIGIN FOR THE GROUP (A): 30.7359 40.7591 38.6977 REMARK 3 T TENSOR REMARK 3 T11: 0.1982 T22: 0.2322 REMARK 3 T33: 0.3627 T12: -0.0326 REMARK 3 T13: 0.0196 T23: 0.0377 REMARK 3 L TENSOR REMARK 3 L11: 3.1616 L22: 4.4997 REMARK 3 L33: 6.2277 L12: -0.0807 REMARK 3 L13: -0.7959 L23: 4.2005 REMARK 3 S TENSOR REMARK 3 S11: -0.0454 S12: 0.1135 S13: 0.3145 REMARK 3 S21: 0.0819 S22: -0.0736 S23: 0.1623 REMARK 3 S31: 0.1663 S32: -0.6936 S33: 0.1272 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 111:146) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1495 32.3185 46.5286 REMARK 3 T TENSOR REMARK 3 T11: 0.2232 T22: 0.2214 REMARK 3 T33: 0.2722 T12: -0.0313 REMARK 3 T13: 0.0303 T23: -0.0613 REMARK 3 L TENSOR REMARK 3 L11: 3.4470 L22: 3.0566 REMARK 3 L33: 3.6050 L12: 0.7455 REMARK 3 L13: -1.1580 L23: -0.9618 REMARK 3 S TENSOR REMARK 3 S11: -0.0178 S12: -0.1846 S13: 0.1035 REMARK 3 S21: 0.3901 S22: -0.0673 S23: 0.3390 REMARK 3 S31: -0.0468 S32: -0.2482 S33: 0.0699 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 147:252) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2442 22.2571 41.7961 REMARK 3 T TENSOR REMARK 3 T11: 0.3068 T22: 0.1964 REMARK 3 T33: 0.2811 T12: -0.0504 REMARK 3 T13: 0.0298 T23: -0.0586 REMARK 3 L TENSOR REMARK 3 L11: 3.3656 L22: 1.8577 REMARK 3 L33: 2.1222 L12: -0.3802 REMARK 3 L13: -1.3861 L23: -0.1051 REMARK 3 S TENSOR REMARK 3 S11: -0.2242 S12: 0.1939 S13: -0.4179 REMARK 3 S21: 0.0002 S22: 0.0172 S23: 0.0637 REMARK 3 S31: 0.4568 S32: -0.1341 S33: 0.1648 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 253:258) REMARK 3 ORIGIN FOR THE GROUP (A): 33.5930 29.1925 15.2516 REMARK 3 T TENSOR REMARK 3 T11: 0.9435 T22: 0.6445 REMARK 3 T33: 0.5006 T12: -0.0165 REMARK 3 T13: -0.0466 T23: -0.0986 REMARK 3 L TENSOR REMARK 3 L11: 8.4876 L22: 4.8079 REMARK 3 L33: 4.5818 L12: -2.0606 REMARK 3 L13: 2.2651 L23: -4.6049 REMARK 3 S TENSOR REMARK 3 S11: 0.2872 S12: 1.0940 S13: -0.9088 REMARK 3 S21: -3.0622 S22: 0.4822 S23: 0.6847 REMARK 3 S31: 0.2350 S32: 0.0816 S33: -0.7788 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 7:76) REMARK 3 ORIGIN FOR THE GROUP (A): 50.1420 37.6619 36.0043 REMARK 3 T TENSOR REMARK 3 T11: 0.1270 T22: 0.1999 REMARK 3 T33: 0.1978 T12: 0.0209 REMARK 3 T13: 0.0046 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 3.7380 L22: 4.1771 REMARK 3 L33: 3.9699 L12: -0.2711 REMARK 3 L13: 0.3563 L23: -0.1366 REMARK 3 S TENSOR REMARK 3 S11: 0.0299 S12: 0.1872 S13: -0.0438 REMARK 3 S21: -0.1694 S22: 0.0765 S23: -0.1208 REMARK 3 S31: -0.0602 S32: -0.0406 S33: -0.1026 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 77:113) REMARK 3 ORIGIN FOR THE GROUP (A): 63.6321 30.9442 38.4715 REMARK 3 T TENSOR REMARK 3 T11: 0.2073 T22: 0.2065 REMARK 3 T33: 0.3229 T12: 0.0505 REMARK 3 T13: 0.0226 T23: -0.0318 REMARK 3 L TENSOR REMARK 3 L11: 4.1642 L22: 3.9593 REMARK 3 L33: 5.1851 L12: -0.1789 REMARK 3 L13: 1.5702 L23: -2.2194 REMARK 3 S TENSOR REMARK 3 S11: 0.1253 S12: 0.0174 S13: -0.3550 REMARK 3 S21: -0.0766 S22: -0.0735 S23: -0.0398 REMARK 3 S31: 0.3250 S32: 0.0519 S33: -0.0759 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 114:176) REMARK 3 ORIGIN FOR THE GROUP (A): 67.6709 46.2244 44.4357 REMARK 3 T TENSOR REMARK 3 T11: 0.1697 T22: 0.2484 REMARK 3 T33: 0.2753 T12: 0.0021 REMARK 3 T13: 0.0110 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 3.1348 L22: 4.0007 REMARK 3 L33: 3.4385 L12: -1.0411 REMARK 3 L13: 0.4412 L23: 0.1958 REMARK 3 S TENSOR REMARK 3 S11: -0.0278 S12: -0.2212 S13: 0.3077 REMARK 3 S21: 0.2374 S22: 0.0757 S23: -0.2247 REMARK 3 S31: -0.1232 S32: 0.1263 S33: -0.0442 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 177:199) REMARK 3 ORIGIN FOR THE GROUP (A): 70.5927 47.4905 38.9901 REMARK 3 T TENSOR REMARK 3 T11: 0.2481 T22: 0.2274 REMARK 3 T33: 0.3364 T12: 0.0070 REMARK 3 T13: 0.0510 T23: 0.0436 REMARK 3 L TENSOR REMARK 3 L11: 2.7259 L22: 1.4132 REMARK 3 L33: 3.1238 L12: -0.8630 REMARK 3 L13: -0.6416 L23: 1.5429 REMARK 3 S TENSOR REMARK 3 S11: 0.0782 S12: 0.2249 S13: 0.5731 REMARK 3 S21: -0.1825 S22: -0.0054 S23: -0.1679 REMARK 3 S31: -0.2208 S32: 0.1214 S33: -0.0511 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 200:251) REMARK 3 ORIGIN FOR THE GROUP (A): 62.7062 49.3668 34.4627 REMARK 3 T TENSOR REMARK 3 T11: 0.2182 T22: 0.2168 REMARK 3 T33: 0.2884 T12: -0.0069 REMARK 3 T13: 0.0518 T23: 0.0823 REMARK 3 L TENSOR REMARK 3 L11: 3.7607 L22: 2.6056 REMARK 3 L33: 3.9021 L12: -0.3484 REMARK 3 L13: 1.3988 L23: 1.5105 REMARK 3 S TENSOR REMARK 3 S11: 0.0431 S12: 0.4435 S13: 0.4875 REMARK 3 S21: -0.2563 S22: -0.1000 S23: -0.0639 REMARK 3 S31: -0.3036 S32: 0.0192 S33: 0.0485 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 252:257) REMARK 3 ORIGIN FOR THE GROUP (A): 55.0255 42.5682 14.1283 REMARK 3 T TENSOR REMARK 3 T11: 0.6583 T22: 1.0217 REMARK 3 T33: 0.4737 T12: 0.2306 REMARK 3 T13: -0.0502 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 6.5933 L22: 2.0000 REMARK 3 L33: 2.6931 L12: 7.5872 REMARK 3 L13: 3.8080 L23: 6.1111 REMARK 3 S TENSOR REMARK 3 S11: 0.5939 S12: 3.0211 S13: -0.7094 REMARK 3 S21: -2.6196 S22: 0.5219 S23: -0.7432 REMARK 3 S31: 0.4255 S32: 0.9365 S33: -0.7964 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VTV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1000247070. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30884 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 23.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.53300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3FIJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM CHLORIDE, 0.1 M TRIS PH REMARK 280 8.5, 25% (W/V) PEG3350, 1 MM MANGANESE CHLORIDE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.58050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.31550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.08850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.31550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.58050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.08850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 MET A 5 REMARK 465 GLU A 6 REMARK 465 ASN A 7 REMARK 465 ILE A 8 REMARK 465 MET A 9 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 LEU B 3 REMARK 465 SER B 4 REMARK 465 MET B 5 REMARK 465 GLU B 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 91 77.98 -104.59 REMARK 500 CYS A 118 -101.08 55.94 REMARK 500 LYS A 192 -75.36 -104.66 REMARK 500 PHE A 219 94.75 -162.77 REMARK 500 ASP B 91 79.54 60.80 REMARK 500 CYS B 118 -98.91 55.03 REMARK 500 LYS B 192 -72.09 -103.57 REMARK 500 PHE B 219 92.80 -164.12 REMARK 500 LYS B 255 2.77 -68.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 670 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B 654 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH B 655 DISTANCE = 7.37 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 145 ND1 REMARK 620 2 HIS A 161 NE2 89.5 REMARK 620 3 SER A 185 OG 95.7 92.8 REMARK 620 4 HIS A 187 NE2 88.1 174.8 82.9 REMARK 620 5 GLU A 210 OE2 87.9 90.5 175.1 94.0 REMARK 620 6 HOH A 483 O 178.3 89.0 85.2 93.5 91.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 145 ND1 REMARK 620 2 HIS B 161 NE2 87.0 REMARK 620 3 SER B 185 OG 95.0 93.9 REMARK 620 4 HIS B 187 NE2 89.1 174.8 83.1 REMARK 620 5 GLU B 210 OE2 90.0 92.5 172.2 90.9 REMARK 620 6 HOH B 434 O 175.8 92.4 89.3 91.7 85.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP96353 RELATED DB: TARGETTRACK DBREF 6VTV A 5 258 UNP P76038 PUUD_ECOLI 1 254 DBREF 6VTV B 5 258 UNP P76038 PUUD_ECOLI 1 254 SEQADV 6VTV MET A 1 UNP P76038 EXPRESSION TAG SEQADV 6VTV ARG A 2 UNP P76038 EXPRESSION TAG SEQADV 6VTV LEU A 3 UNP P76038 EXPRESSION TAG SEQADV 6VTV SER A 4 UNP P76038 EXPRESSION TAG SEQADV 6VTV MET B 1 UNP P76038 EXPRESSION TAG SEQADV 6VTV ARG B 2 UNP P76038 EXPRESSION TAG SEQADV 6VTV LEU B 3 UNP P76038 EXPRESSION TAG SEQADV 6VTV SER B 4 UNP P76038 EXPRESSION TAG SEQRES 1 A 258 MET ARG LEU SER MET GLU ASN ILE MET ASN ASN PRO VAL SEQRES 2 A 258 ILE GLY VAL VAL MET CYS ARG ASN ARG LEU LYS GLY HIS SEQRES 3 A 258 ALA THR GLN THR LEU GLN GLU LYS TYR LEU ASN ALA ILE SEQRES 4 A 258 ILE HIS ALA GLY GLY LEU PRO ILE ALA LEU PRO HIS ALA SEQRES 5 A 258 LEU ALA GLU PRO SER LEU LEU GLU GLN LEU LEU PRO LYS SEQRES 6 A 258 LEU ASP GLY ILE TYR LEU PRO GLY SER PRO SER ASN VAL SEQRES 7 A 258 GLN PRO HIS LEU TYR GLY GLU ASN GLY ASP GLU PRO ASP SEQRES 8 A 258 ALA ASP PRO GLY ARG ASP LEU LEU SER MET ALA ILE ILE SEQRES 9 A 258 ASN ALA ALA LEU GLU ARG ARG ILE PRO ILE PHE ALA ILE SEQRES 10 A 258 CYS ARG GLY LEU GLN GLU LEU VAL VAL ALA THR GLY GLY SEQRES 11 A 258 SER LEU HIS ARG LYS LEU CYS GLU GLN PRO GLU LEU LEU SEQRES 12 A 258 GLU HIS ARG GLU ASP PRO GLU LEU PRO VAL GLU GLN GLN SEQRES 13 A 258 TYR ALA PRO SER HIS GLU VAL GLN VAL GLU GLU GLY GLY SEQRES 14 A 258 LEU LEU SER ALA LEU LEU PRO GLU CYS SER ASN PHE TRP SEQRES 15 A 258 VAL ASN SER LEU HIS GLY GLN GLY ALA LYS VAL VAL SER SEQRES 16 A 258 PRO ARG LEU ARG VAL GLU ALA ARG SER PRO ASP GLY LEU SEQRES 17 A 258 VAL GLU ALA VAL SER VAL ILE ASN HIS PRO PHE ALA LEU SEQRES 18 A 258 GLY VAL GLN TRP HIS PRO GLU TRP ASN SER SER GLU TYR SEQRES 19 A 258 ALA LEU SER ARG ILE LEU PHE GLU GLY PHE ILE THR ALA SEQRES 20 A 258 CYS GLN HIS HIS ILE ALA GLU LYS GLN ARG LEU SEQRES 1 B 258 MET ARG LEU SER MET GLU ASN ILE MET ASN ASN PRO VAL SEQRES 2 B 258 ILE GLY VAL VAL MET CYS ARG ASN ARG LEU LYS GLY HIS SEQRES 3 B 258 ALA THR GLN THR LEU GLN GLU LYS TYR LEU ASN ALA ILE SEQRES 4 B 258 ILE HIS ALA GLY GLY LEU PRO ILE ALA LEU PRO HIS ALA SEQRES 5 B 258 LEU ALA GLU PRO SER LEU LEU GLU GLN LEU LEU PRO LYS SEQRES 6 B 258 LEU ASP GLY ILE TYR LEU PRO GLY SER PRO SER ASN VAL SEQRES 7 B 258 GLN PRO HIS LEU TYR GLY GLU ASN GLY ASP GLU PRO ASP SEQRES 8 B 258 ALA ASP PRO GLY ARG ASP LEU LEU SER MET ALA ILE ILE SEQRES 9 B 258 ASN ALA ALA LEU GLU ARG ARG ILE PRO ILE PHE ALA ILE SEQRES 10 B 258 CYS ARG GLY LEU GLN GLU LEU VAL VAL ALA THR GLY GLY SEQRES 11 B 258 SER LEU HIS ARG LYS LEU CYS GLU GLN PRO GLU LEU LEU SEQRES 12 B 258 GLU HIS ARG GLU ASP PRO GLU LEU PRO VAL GLU GLN GLN SEQRES 13 B 258 TYR ALA PRO SER HIS GLU VAL GLN VAL GLU GLU GLY GLY SEQRES 14 B 258 LEU LEU SER ALA LEU LEU PRO GLU CYS SER ASN PHE TRP SEQRES 15 B 258 VAL ASN SER LEU HIS GLY GLN GLY ALA LYS VAL VAL SER SEQRES 16 B 258 PRO ARG LEU ARG VAL GLU ALA ARG SER PRO ASP GLY LEU SEQRES 17 B 258 VAL GLU ALA VAL SER VAL ILE ASN HIS PRO PHE ALA LEU SEQRES 18 B 258 GLY VAL GLN TRP HIS PRO GLU TRP ASN SER SER GLU TYR SEQRES 19 B 258 ALA LEU SER ARG ILE LEU PHE GLU GLY PHE ILE THR ALA SEQRES 20 B 258 CYS GLN HIS HIS ILE ALA GLU LYS GLN ARG LEU HET MN A 301 1 HET MN B 301 1 HETNAM MN MANGANESE (II) ION FORMUL 3 MN 2(MN 2+) FORMUL 5 HOH *525(H2 O) HELIX 1 AA1 GLU A 33 GLY A 43 1 11 HELIX 2 AA2 PRO A 50 ALA A 54 5 5 HELIX 3 AA3 GLU A 55 LEU A 63 1 9 HELIX 4 AA4 PRO A 64 LEU A 66 5 3 HELIX 5 AA5 GLN A 79 GLY A 84 5 6 HELIX 6 AA6 ASP A 93 ARG A 111 1 19 HELIX 7 AA7 CYS A 118 THR A 128 1 11 HELIX 8 AA8 LYS A 135 GLN A 139 5 5 HELIX 9 AA9 PRO A 152 TYR A 157 1 6 HELIX 10 AB1 GLY A 169 LEU A 175 1 7 HELIX 11 AB2 ASN A 230 GLU A 233 5 4 HELIX 12 AB3 TYR A 234 LEU A 258 1 25 HELIX 13 AB4 GLU B 33 GLY B 43 1 11 HELIX 14 AB5 PRO B 50 ALA B 54 5 5 HELIX 15 AB6 GLU B 55 LEU B 63 1 9 HELIX 16 AB7 PRO B 64 LEU B 66 5 3 HELIX 17 AB8 GLN B 79 GLY B 84 5 6 HELIX 18 AB9 ASP B 93 ARG B 110 1 18 HELIX 19 AC1 CYS B 118 THR B 128 1 11 HELIX 20 AC2 LYS B 135 GLN B 139 5 5 HELIX 21 AC3 PRO B 152 TYR B 157 1 6 HELIX 22 AC4 GLY B 169 LEU B 175 1 7 HELIX 23 AC5 ASN B 230 GLU B 233 5 4 HELIX 24 AC6 TYR B 234 LYS B 255 1 22 SHEET 1 AA1 9 LEU A 45 LEU A 49 0 SHEET 2 AA1 9 VAL A 13 VAL A 17 1 N VAL A 16 O LEU A 49 SHEET 3 AA1 9 GLY A 68 LEU A 71 1 O TYR A 70 N GLY A 15 SHEET 4 AA1 9 ILE A 114 ILE A 117 1 O ILE A 117 N LEU A 71 SHEET 5 AA1 9 ALA A 220 VAL A 223 1 O VAL A 223 N ALA A 116 SHEET 6 AA1 9 VAL A 209 VAL A 214 -1 N VAL A 212 O GLY A 222 SHEET 7 AA1 9 LEU A 198 ARG A 203 -1 N GLU A 201 O ALA A 211 SHEET 8 AA1 9 HIS A 161 VAL A 165 -1 N GLN A 164 O ARG A 203 SHEET 9 AA1 9 ASN A 180 VAL A 183 -1 O VAL A 183 N HIS A 161 SHEET 1 AA2 4 CYS A 19 LEU A 23 0 SHEET 2 AA2 4 HIS A 26 GLN A 32 -1 O THR A 28 N ASN A 21 SHEET 3 AA2 4 HIS B 26 GLN B 32 -1 O LEU B 31 N GLN A 29 SHEET 4 AA2 4 CYS B 19 LEU B 23 -1 N ASN B 21 O THR B 28 SHEET 1 AA3 2 LEU A 132 HIS A 133 0 SHEET 2 AA3 2 GLY A 190 ALA A 191 -1 O GLY A 190 N HIS A 133 SHEET 1 AA4 9 LEU B 45 LEU B 49 0 SHEET 2 AA4 9 VAL B 13 VAL B 17 1 N VAL B 16 O LEU B 49 SHEET 3 AA4 9 GLY B 68 LEU B 71 1 O TYR B 70 N GLY B 15 SHEET 4 AA4 9 ILE B 114 ILE B 117 1 O ILE B 117 N LEU B 71 SHEET 5 AA4 9 ALA B 220 VAL B 223 1 O LEU B 221 N ALA B 116 SHEET 6 AA4 9 VAL B 209 VAL B 214 -1 N VAL B 212 O GLY B 222 SHEET 7 AA4 9 LEU B 198 ARG B 203 -1 N ARG B 199 O SER B 213 SHEET 8 AA4 9 HIS B 161 VAL B 165 -1 N GLN B 164 O ARG B 203 SHEET 9 AA4 9 ASN B 180 VAL B 183 -1 O VAL B 183 N HIS B 161 SHEET 1 AA5 2 LEU B 132 HIS B 133 0 SHEET 2 AA5 2 GLY B 190 ALA B 191 -1 O GLY B 190 N HIS B 133 LINK ND1 HIS A 145 MN MN A 301 1555 1555 2.20 LINK NE2 HIS A 161 MN MN A 301 1555 1555 2.23 LINK OG SER A 185 MN MN A 301 1555 1555 2.29 LINK NE2 HIS A 187 MN MN A 301 1555 1555 2.24 LINK OE2 GLU A 210 MN MN A 301 1555 1555 2.26 LINK MN MN A 301 O HOH A 483 1555 1555 2.34 LINK ND1 HIS B 145 MN MN B 301 1555 1555 2.29 LINK NE2 HIS B 161 MN MN B 301 1555 1555 2.29 LINK OG SER B 185 MN MN B 301 1555 1555 2.24 LINK NE2 HIS B 187 MN MN B 301 1555 1555 2.22 LINK OE2 GLU B 210 MN MN B 301 1555 1555 2.19 LINK MN MN B 301 O HOH B 434 1555 1555 2.30 SITE 1 AC1 6 HIS A 145 HIS A 161 SER A 185 HIS A 187 SITE 2 AC1 6 GLU A 210 HOH A 483 SITE 1 AC2 6 HIS B 145 HIS B 161 SER B 185 HIS B 187 SITE 2 AC2 6 GLU B 210 HOH B 434 CRYST1 69.161 72.177 98.631 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014459 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013855 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010139 0.00000