HEADER TRANSCRIPTION 14-FEB-20 6VU7 TITLE CRYSTAL STRUCTURE OF YBJN, A PUTATIVE TRANSCRIPTION REGULATOR FROM E. TITLE 2 COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: YBJN PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN 55989 / EAEC); SOURCE 3 ORGANISM_TAXID: 585055; SOURCE 4 STRAIN: 55989 / EAEC; SOURCE 5 GENE: YBJN, EC55989_0898; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: GOLD; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG68SBPTEV KEYWDS STRUCTURAL GENOMICS, CSGID, CENTER FOR STRUCTURAL GENOMICS OF KEYWDS 2 INFECTIOUS DISEASES, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 3 INFECTIOUS DISEASES, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,E.EVDOKIMOVA,R.DI LEO,A.SAVCHENKO,A.JOACHIMIAK, AUTHOR 2 K.J.F.SATCHELL,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 2 11-OCT-23 6VU7 1 REMARK REVDAT 1 11-MAR-20 6VU7 0 JRNL AUTH P.J.STOGIOS JRNL TITL CRYSTAL STRUCTURE OF YBJN, A PUTATIVE TRANSCRIPTION JRNL TITL 2 REGULATOR FROM E. COLI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15_3448 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 19623 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 984 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.9300 - 4.9500 0.99 2689 142 0.1988 0.2335 REMARK 3 2 4.9500 - 3.9300 1.00 2693 142 0.1915 0.2614 REMARK 3 3 3.9300 - 3.4400 1.00 2685 143 0.2259 0.2984 REMARK 3 4 3.4400 - 3.1200 1.00 2676 142 0.2697 0.3394 REMARK 3 5 3.1200 - 2.9000 1.00 2671 137 0.2958 0.3407 REMARK 3 6 2.9000 - 2.7300 1.00 2634 141 0.3140 0.3498 REMARK 3 7 2.7300 - 2.5900 0.97 2591 137 0.3258 0.3851 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.405 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.903 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4445 REMARK 3 ANGLE : 0.596 6051 REMARK 3 CHIRALITY : 0.043 723 REMARK 3 PLANARITY : 0.003 782 REMARK 3 DIHEDRAL : 21.077 1605 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.2220 -6.6757 11.4770 REMARK 3 T TENSOR REMARK 3 T11: 0.3709 T22: 0.3663 REMARK 3 T33: 0.3446 T12: -0.0131 REMARK 3 T13: -0.0024 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 3.2499 L22: 2.5596 REMARK 3 L33: 6.3217 L12: 2.3051 REMARK 3 L13: -3.3360 L23: -0.7668 REMARK 3 S TENSOR REMARK 3 S11: 0.4155 S12: -0.8970 S13: 0.2723 REMARK 3 S21: 0.0990 S22: -0.4073 S23: -0.1182 REMARK 3 S31: -0.4864 S32: 0.2393 S33: 0.1288 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8450 -11.8960 15.0301 REMARK 3 T TENSOR REMARK 3 T11: 0.2900 T22: 0.3826 REMARK 3 T33: 0.1964 T12: -0.0242 REMARK 3 T13: -0.0017 T23: 0.0395 REMARK 3 L TENSOR REMARK 3 L11: 8.5588 L22: 6.3914 REMARK 3 L33: 3.1174 L12: 1.1560 REMARK 3 L13: -1.9223 L23: 3.7664 REMARK 3 S TENSOR REMARK 3 S11: 0.0006 S12: -0.1622 S13: -0.4205 REMARK 3 S21: -0.0112 S22: -0.1585 S23: 0.2978 REMARK 3 S31: 0.0895 S32: -0.0928 S33: 0.2890 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3006 -12.6729 1.1753 REMARK 3 T TENSOR REMARK 3 T11: 0.3511 T22: 0.2748 REMARK 3 T33: 0.2857 T12: 0.0491 REMARK 3 T13: 0.0068 T23: -0.0455 REMARK 3 L TENSOR REMARK 3 L11: 6.5810 L22: 0.7125 REMARK 3 L33: 3.2805 L12: 1.8828 REMARK 3 L13: 2.3037 L23: -0.0177 REMARK 3 S TENSOR REMARK 3 S11: 0.2359 S12: -0.0583 S13: 0.2138 REMARK 3 S21: 0.1323 S22: -0.1035 S23: 0.0066 REMARK 3 S31: 0.1691 S32: -0.3606 S33: -0.1599 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5897 -8.5549 1.8917 REMARK 3 T TENSOR REMARK 3 T11: 0.3204 T22: 0.3136 REMARK 3 T33: 0.2492 T12: 0.0484 REMARK 3 T13: -0.0382 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 9.1260 L22: 2.8531 REMARK 3 L33: 1.2723 L12: 4.6839 REMARK 3 L13: 0.2972 L23: 0.2360 REMARK 3 S TENSOR REMARK 3 S11: 0.1753 S12: 0.0803 S13: 0.0467 REMARK 3 S21: 0.0379 S22: -0.1208 S23: 0.0670 REMARK 3 S31: -0.0236 S32: -0.1512 S33: -0.0753 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.7250 0.7079 -19.4070 REMARK 3 T TENSOR REMARK 3 T11: 0.4009 T22: 0.3687 REMARK 3 T33: 0.4278 T12: 0.0406 REMARK 3 T13: -0.0197 T23: 0.1533 REMARK 3 L TENSOR REMARK 3 L11: 7.0183 L22: 5.7806 REMARK 3 L33: 7.8141 L12: 3.2765 REMARK 3 L13: 0.4476 L23: 4.2492 REMARK 3 S TENSOR REMARK 3 S11: -0.3738 S12: 1.1221 S13: 0.5374 REMARK 3 S21: -0.5531 S22: 0.2151 S23: 0.3818 REMARK 3 S31: -0.6742 S32: -0.1955 S33: 0.1046 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5325 -10.4083 -15.1154 REMARK 3 T TENSOR REMARK 3 T11: 0.2951 T22: 0.2829 REMARK 3 T33: 0.2633 T12: 0.0520 REMARK 3 T13: 0.0682 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 3.7690 L22: 1.8289 REMARK 3 L33: 2.9036 L12: 1.9535 REMARK 3 L13: 2.4917 L23: 0.8211 REMARK 3 S TENSOR REMARK 3 S11: 0.0206 S12: 0.0575 S13: -0.0364 REMARK 3 S21: -0.1356 S22: -0.0060 S23: 0.0322 REMARK 3 S31: 0.0410 S32: 0.0404 S33: 0.0089 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 2 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7050 -32.7150 -36.6646 REMARK 3 T TENSOR REMARK 3 T11: 0.4133 T22: 0.4754 REMARK 3 T33: 0.4459 T12: -0.1308 REMARK 3 T13: -0.0240 T23: -0.0743 REMARK 3 L TENSOR REMARK 3 L11: 3.0162 L22: 6.6319 REMARK 3 L33: 6.9221 L12: -2.5799 REMARK 3 L13: 4.4173 L23: -2.3722 REMARK 3 S TENSOR REMARK 3 S11: -0.2744 S12: 0.6931 S13: -0.6722 REMARK 3 S21: -0.8739 S22: 0.6748 S23: 0.4758 REMARK 3 S31: 0.3728 S32: -0.2264 S33: -0.3024 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 19 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.7751 -22.7975 -41.3635 REMARK 3 T TENSOR REMARK 3 T11: 0.5557 T22: 0.3655 REMARK 3 T33: 0.6639 T12: -0.0754 REMARK 3 T13: -0.0728 T23: 0.0681 REMARK 3 L TENSOR REMARK 3 L11: 6.2912 L22: 2.5923 REMARK 3 L33: 5.5175 L12: -3.0201 REMARK 3 L13: -5.8852 L23: 2.9227 REMARK 3 S TENSOR REMARK 3 S11: -0.9730 S12: -0.3557 S13: 1.6974 REMARK 3 S21: -0.1260 S22: 1.6639 S23: -1.0457 REMARK 3 S31: 1.8910 S32: 0.2168 S33: -0.8197 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 29 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.9147 -20.8731 -31.6102 REMARK 3 T TENSOR REMARK 3 T11: 0.3005 T22: 0.3133 REMARK 3 T33: 0.2129 T12: 0.0092 REMARK 3 T13: 0.0110 T23: -0.0676 REMARK 3 L TENSOR REMARK 3 L11: 7.8178 L22: 1.5038 REMARK 3 L33: 4.7893 L12: 2.1557 REMARK 3 L13: 2.1741 L23: -1.2503 REMARK 3 S TENSOR REMARK 3 S11: -0.2119 S12: 0.2849 S13: 0.2408 REMARK 3 S21: -0.2580 S22: 0.1180 S23: -0.1053 REMARK 3 S31: -0.1842 S32: -0.1549 S33: 0.0916 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 65 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.5489 -22.5773 -22.0031 REMARK 3 T TENSOR REMARK 3 T11: 0.2203 T22: 0.2228 REMARK 3 T33: 0.2720 T12: 0.0956 REMARK 3 T13: -0.0361 T23: -0.0367 REMARK 3 L TENSOR REMARK 3 L11: 4.3364 L22: 4.2673 REMARK 3 L33: 1.3632 L12: 3.5800 REMARK 3 L13: 1.4083 L23: 0.0545 REMARK 3 S TENSOR REMARK 3 S11: 0.0261 S12: -0.0966 S13: -0.0654 REMARK 3 S21: -0.0061 S22: -0.0014 S23: 0.0293 REMARK 3 S31: 0.0194 S32: -0.0977 S33: -0.0169 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 113 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1215 -21.0288 -23.5358 REMARK 3 T TENSOR REMARK 3 T11: 0.3775 T22: 0.4314 REMARK 3 T33: 0.4297 T12: 0.1041 REMARK 3 T13: -0.0268 T23: 0.0239 REMARK 3 L TENSOR REMARK 3 L11: 7.3552 L22: 8.5818 REMARK 3 L33: 2.1342 L12: 6.2130 REMARK 3 L13: -0.1470 L23: 1.5562 REMARK 3 S TENSOR REMARK 3 S11: -0.0126 S12: -0.3410 S13: 0.8096 REMARK 3 S21: -0.2779 S22: -0.0939 S23: 0.9230 REMARK 3 S31: -0.3883 S32: -0.3205 S33: 0.1182 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 137 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.6526 -6.1419 -25.3652 REMARK 3 T TENSOR REMARK 3 T11: 0.4730 T22: 0.3606 REMARK 3 T33: 0.5842 T12: 0.1131 REMARK 3 T13: -0.0519 T23: -0.1408 REMARK 3 L TENSOR REMARK 3 L11: 4.2611 L22: 3.3511 REMARK 3 L33: 6.1799 L12: 3.6279 REMARK 3 L13: -4.3363 L23: -3.4378 REMARK 3 S TENSOR REMARK 3 S11: 0.0837 S12: 0.3954 S13: 0.7331 REMARK 3 S21: 0.7296 S22: 1.0421 S23: 0.2379 REMARK 3 S31: -0.8469 S32: -0.2485 S33: -0.8909 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 3 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1860 -43.1023 -11.6786 REMARK 3 T TENSOR REMARK 3 T11: 0.3054 T22: 0.4818 REMARK 3 T33: 0.5563 T12: 0.0031 REMARK 3 T13: 0.0068 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 3.6700 L22: 9.4562 REMARK 3 L33: 8.1202 L12: -4.9363 REMARK 3 L13: -0.2730 L23: -3.9494 REMARK 3 S TENSOR REMARK 3 S11: -0.0989 S12: -0.9508 S13: -0.5236 REMARK 3 S21: 0.2291 S22: 0.5002 S23: 1.5101 REMARK 3 S31: -0.1161 S32: -0.6451 S33: -0.4098 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 19 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4052 -44.3786 -3.4904 REMARK 3 T TENSOR REMARK 3 T11: 0.4523 T22: 0.4371 REMARK 3 T33: 0.5450 T12: -0.0643 REMARK 3 T13: -0.0765 T23: -0.0398 REMARK 3 L TENSOR REMARK 3 L11: 7.7565 L22: 7.7815 REMARK 3 L33: 4.4918 L12: -3.3028 REMARK 3 L13: 1.3555 L23: -5.7684 REMARK 3 S TENSOR REMARK 3 S11: -0.5069 S12: -0.6383 S13: -0.0854 REMARK 3 S21: 0.4125 S22: -0.4279 S23: 0.0128 REMARK 3 S31: -0.2185 S32: -0.0656 S33: 0.9562 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 31 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.9448 -39.6314 -6.1219 REMARK 3 T TENSOR REMARK 3 T11: 0.4313 T22: 0.3213 REMARK 3 T33: 0.3632 T12: 0.0570 REMARK 3 T13: -0.0325 T23: 0.0662 REMARK 3 L TENSOR REMARK 3 L11: 6.5099 L22: 4.8354 REMARK 3 L33: 4.7781 L12: 5.2286 REMARK 3 L13: -0.9349 L23: 0.9641 REMARK 3 S TENSOR REMARK 3 S11: 0.7015 S12: -1.0077 S13: 0.1004 REMARK 3 S21: 0.7709 S22: -0.6563 S23: 0.1936 REMARK 3 S31: 0.5736 S32: 0.3846 S33: -0.0370 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 52 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.9517 -30.1299 -11.4537 REMARK 3 T TENSOR REMARK 3 T11: 0.3368 T22: 0.1893 REMARK 3 T33: 0.2710 T12: 0.0300 REMARK 3 T13: -0.0071 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 7.3994 L22: 1.5244 REMARK 3 L33: 1.8986 L12: 0.9009 REMARK 3 L13: 1.0998 L23: -0.6616 REMARK 3 S TENSOR REMARK 3 S11: 0.2250 S12: -0.5636 S13: -0.1038 REMARK 3 S21: 0.1958 S22: -0.1634 S23: 0.0860 REMARK 3 S31: 0.1418 S32: -0.1398 S33: -0.0497 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 113 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.5879 -40.3299 -15.7362 REMARK 3 T TENSOR REMARK 3 T11: 0.4450 T22: 0.2113 REMARK 3 T33: 0.4880 T12: 0.0037 REMARK 3 T13: -0.0218 T23: 0.0555 REMARK 3 L TENSOR REMARK 3 L11: 9.1538 L22: 4.2648 REMARK 3 L33: 2.5852 L12: 2.4869 REMARK 3 L13: 2.8843 L23: 2.3361 REMARK 3 S TENSOR REMARK 3 S11: 0.3411 S12: 0.1419 S13: -1.3266 REMARK 3 S21: -0.3559 S22: -0.0947 S23: -0.5809 REMARK 3 S31: 0.3061 S32: 0.1098 S33: -0.2753 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VU7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1000247078. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19643 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.59700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.680 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5FR7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M DIAMMIONIUM CITRATE, 0.1 M MES REMARK 280 PH 5.2, 26% (W/V) PEG3350, 2% ISOPROPANOL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 55.44550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 144 REMARK 465 ASP A 145 REMARK 465 GLU A 146 REMARK 465 GLY A 147 REMARK 465 GLN A 148 REMARK 465 ASN A 149 REMARK 465 ASN A 150 REMARK 465 VAL A 151 REMARK 465 THR A 152 REMARK 465 GLU A 153 REMARK 465 ASN A 154 REMARK 465 TYR A 155 REMARK 465 PHE A 156 REMARK 465 LEU A 157 REMARK 465 HIS A 158 REMARK 465 MET B 1 REMARK 465 ASP B 144 REMARK 465 ASP B 145 REMARK 465 GLU B 146 REMARK 465 GLY B 147 REMARK 465 GLN B 148 REMARK 465 ASN B 149 REMARK 465 ASN B 150 REMARK 465 VAL B 151 REMARK 465 THR B 152 REMARK 465 GLU B 153 REMARK 465 ASN B 154 REMARK 465 TYR B 155 REMARK 465 PHE B 156 REMARK 465 LEU B 157 REMARK 465 HIS B 158 REMARK 465 MET C 1 REMARK 465 GLU C 146 REMARK 465 GLY C 147 REMARK 465 GLN C 148 REMARK 465 ASN C 149 REMARK 465 ASN C 150 REMARK 465 VAL C 151 REMARK 465 THR C 152 REMARK 465 GLU C 153 REMARK 465 ASN C 154 REMARK 465 TYR C 155 REMARK 465 PHE C 156 REMARK 465 LEU C 157 REMARK 465 HIS C 158 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 ASP D 27 REMARK 465 ASN D 28 REMARK 465 HIS D 36 REMARK 465 MET D 37 REMARK 465 GLN D 38 REMARK 465 THR D 143 REMARK 465 ASP D 144 REMARK 465 ASP D 145 REMARK 465 GLU D 146 REMARK 465 GLY D 147 REMARK 465 GLN D 148 REMARK 465 ASN D 149 REMARK 465 ASN D 150 REMARK 465 VAL D 151 REMARK 465 THR D 152 REMARK 465 GLU D 153 REMARK 465 ASN D 154 REMARK 465 TYR D 155 REMARK 465 PHE D 156 REMARK 465 LEU D 157 REMARK 465 HIS D 158 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 26 SG CYS B 29 1.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO D 35 C - N - CA ANGL. DEV. = 13.8 DEGREES REMARK 500 PRO D 35 C - N - CD ANGL. DEV. = -12.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE D 40 99.74 -61.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP96265 RELATED DB: TARGETTRACK DBREF 6VU7 A 1 158 UNP B7LD46 B7LD46_ECO55 1 158 DBREF 6VU7 B 1 158 UNP B7LD46 B7LD46_ECO55 1 158 DBREF 6VU7 C 1 158 UNP B7LD46 B7LD46_ECO55 1 158 DBREF 6VU7 D 1 158 UNP B7LD46 B7LD46_ECO55 1 158 SEQRES 1 A 158 MET THR SER LEU VAL VAL PRO GLY LEU ASP THR LEU ARG SEQRES 2 A 158 GLN TRP LEU ASP ASP LEU GLY MET SER PHE PHE GLU CYS SEQRES 3 A 158 ASP ASN CYS GLN ALA LEU HIS LEU PRO HIS MET GLN ASN SEQRES 4 A 158 PHE ASP GLY VAL PHE ASP ALA LYS ILE ASP LEU ILE ASP SEQRES 5 A 158 ASN THR ILE LEU PHE SER ALA MET ALA GLU VAL ARG PRO SEQRES 6 A 158 SER ALA VAL LEU PRO LEU ALA ALA ASP LEU SER ALA ILE SEQRES 7 A 158 ASN ALA SER SER LEU THR VAL LYS ALA PHE LEU ASP MET SEQRES 8 A 158 GLN ASP ASP ASN LEU PRO LYS LEU VAL VAL CYS GLN SER SEQRES 9 A 158 LEU SER VAL MET GLN GLY VAL THR TYR GLU GLN PHE ALA SEQRES 10 A 158 TRP PHE VAL ARG GLN SER GLU GLU GLN ILE SER MET VAL SEQRES 11 A 158 ILE LEU GLU ALA ASN ALA HIS GLN LEU LEU LEU PRO THR SEQRES 12 A 158 ASP ASP GLU GLY GLN ASN ASN VAL THR GLU ASN TYR PHE SEQRES 13 A 158 LEU HIS SEQRES 1 B 158 MET THR SER LEU VAL VAL PRO GLY LEU ASP THR LEU ARG SEQRES 2 B 158 GLN TRP LEU ASP ASP LEU GLY MET SER PHE PHE GLU CYS SEQRES 3 B 158 ASP ASN CYS GLN ALA LEU HIS LEU PRO HIS MET GLN ASN SEQRES 4 B 158 PHE ASP GLY VAL PHE ASP ALA LYS ILE ASP LEU ILE ASP SEQRES 5 B 158 ASN THR ILE LEU PHE SER ALA MET ALA GLU VAL ARG PRO SEQRES 6 B 158 SER ALA VAL LEU PRO LEU ALA ALA ASP LEU SER ALA ILE SEQRES 7 B 158 ASN ALA SER SER LEU THR VAL LYS ALA PHE LEU ASP MET SEQRES 8 B 158 GLN ASP ASP ASN LEU PRO LYS LEU VAL VAL CYS GLN SER SEQRES 9 B 158 LEU SER VAL MET GLN GLY VAL THR TYR GLU GLN PHE ALA SEQRES 10 B 158 TRP PHE VAL ARG GLN SER GLU GLU GLN ILE SER MET VAL SEQRES 11 B 158 ILE LEU GLU ALA ASN ALA HIS GLN LEU LEU LEU PRO THR SEQRES 12 B 158 ASP ASP GLU GLY GLN ASN ASN VAL THR GLU ASN TYR PHE SEQRES 13 B 158 LEU HIS SEQRES 1 C 158 MET THR SER LEU VAL VAL PRO GLY LEU ASP THR LEU ARG SEQRES 2 C 158 GLN TRP LEU ASP ASP LEU GLY MET SER PHE PHE GLU CYS SEQRES 3 C 158 ASP ASN CYS GLN ALA LEU HIS LEU PRO HIS MET GLN ASN SEQRES 4 C 158 PHE ASP GLY VAL PHE ASP ALA LYS ILE ASP LEU ILE ASP SEQRES 5 C 158 ASN THR ILE LEU PHE SER ALA MET ALA GLU VAL ARG PRO SEQRES 6 C 158 SER ALA VAL LEU PRO LEU ALA ALA ASP LEU SER ALA ILE SEQRES 7 C 158 ASN ALA SER SER LEU THR VAL LYS ALA PHE LEU ASP MET SEQRES 8 C 158 GLN ASP ASP ASN LEU PRO LYS LEU VAL VAL CYS GLN SER SEQRES 9 C 158 LEU SER VAL MET GLN GLY VAL THR TYR GLU GLN PHE ALA SEQRES 10 C 158 TRP PHE VAL ARG GLN SER GLU GLU GLN ILE SER MET VAL SEQRES 11 C 158 ILE LEU GLU ALA ASN ALA HIS GLN LEU LEU LEU PRO THR SEQRES 12 C 158 ASP ASP GLU GLY GLN ASN ASN VAL THR GLU ASN TYR PHE SEQRES 13 C 158 LEU HIS SEQRES 1 D 158 MET THR SER LEU VAL VAL PRO GLY LEU ASP THR LEU ARG SEQRES 2 D 158 GLN TRP LEU ASP ASP LEU GLY MET SER PHE PHE GLU CYS SEQRES 3 D 158 ASP ASN CYS GLN ALA LEU HIS LEU PRO HIS MET GLN ASN SEQRES 4 D 158 PHE ASP GLY VAL PHE ASP ALA LYS ILE ASP LEU ILE ASP SEQRES 5 D 158 ASN THR ILE LEU PHE SER ALA MET ALA GLU VAL ARG PRO SEQRES 6 D 158 SER ALA VAL LEU PRO LEU ALA ALA ASP LEU SER ALA ILE SEQRES 7 D 158 ASN ALA SER SER LEU THR VAL LYS ALA PHE LEU ASP MET SEQRES 8 D 158 GLN ASP ASP ASN LEU PRO LYS LEU VAL VAL CYS GLN SER SEQRES 9 D 158 LEU SER VAL MET GLN GLY VAL THR TYR GLU GLN PHE ALA SEQRES 10 D 158 TRP PHE VAL ARG GLN SER GLU GLU GLN ILE SER MET VAL SEQRES 11 D 158 ILE LEU GLU ALA ASN ALA HIS GLN LEU LEU LEU PRO THR SEQRES 12 D 158 ASP ASP GLU GLY GLN ASN ASN VAL THR GLU ASN TYR PHE SEQRES 13 D 158 LEU HIS HET CL A 201 1 HET CL C 201 1 HETNAM CL CHLORIDE ION FORMUL 5 CL 2(CL 1-) FORMUL 7 HOH *32(H2 O) HELIX 1 AA1 GLY A 8 LEU A 19 1 12 HELIX 2 AA2 PRO A 35 PHE A 40 5 6 HELIX 3 AA3 ARG A 64 SER A 66 5 3 HELIX 4 AA4 ALA A 67 ASP A 74 1 8 HELIX 5 AA5 ASP A 74 SER A 81 1 8 HELIX 6 AA6 THR A 112 HIS A 137 1 26 HELIX 7 AA7 GLY B 8 LEU B 19 1 12 HELIX 8 AA8 PRO B 35 PHE B 40 5 6 HELIX 9 AA9 ARG B 64 SER B 66 5 3 HELIX 10 AB1 ALA B 67 ASP B 74 1 8 HELIX 11 AB2 ASP B 74 SER B 81 1 8 HELIX 12 AB3 THR B 112 HIS B 137 1 26 HELIX 13 AB4 GLY C 8 LEU C 19 1 12 HELIX 14 AB5 PRO C 35 PHE C 40 5 6 HELIX 15 AB6 ARG C 64 SER C 66 5 3 HELIX 16 AB7 ALA C 67 ASP C 74 1 8 HELIX 17 AB8 ASP C 74 SER C 81 1 8 HELIX 18 AB9 THR C 112 HIS C 137 1 26 HELIX 19 AC1 GLY D 8 LEU D 19 1 12 HELIX 20 AC2 ARG D 64 SER D 66 5 3 HELIX 21 AC3 ALA D 67 ASP D 74 1 8 HELIX 22 AC4 ASP D 74 SER D 81 1 8 HELIX 23 AC5 THR D 112 HIS D 137 1 26 SHEET 1 AA1 5 LEU A 32 HIS A 33 0 SHEET 2 AA1 5 ASP A 45 LEU A 50 -1 O ILE A 48 N LEU A 32 SHEET 3 AA1 5 THR A 54 GLU A 62 -1 O MET A 60 N ASP A 45 SHEET 4 AA1 5 LYS A 98 SER A 106 -1 O LEU A 99 N ALA A 61 SHEET 5 AA1 5 LYS A 86 ASP A 90 -1 N ASP A 90 O LYS A 98 SHEET 1 AA2 5 LEU B 32 HIS B 33 0 SHEET 2 AA2 5 VAL B 43 LEU B 50 -1 O ILE B 48 N LEU B 32 SHEET 3 AA2 5 THR B 54 GLU B 62 -1 O MET B 60 N ASP B 45 SHEET 4 AA2 5 LYS B 98 SER B 106 -1 O LEU B 99 N ALA B 61 SHEET 5 AA2 5 LYS B 86 ASP B 90 -1 N PHE B 88 O VAL B 100 SHEET 1 AA3 5 LEU C 32 HIS C 33 0 SHEET 2 AA3 5 ASP C 45 LEU C 50 -1 O ILE C 48 N LEU C 32 SHEET 3 AA3 5 THR C 54 GLU C 62 -1 O MET C 60 N ASP C 45 SHEET 4 AA3 5 LYS C 98 SER C 106 -1 O LEU C 99 N ALA C 61 SHEET 5 AA3 5 LYS C 86 ASP C 90 -1 N ASP C 90 O LYS C 98 SHEET 1 AA4 5 LEU D 32 LEU D 34 0 SHEET 2 AA4 5 VAL D 43 LEU D 50 -1 O ALA D 46 N LEU D 34 SHEET 3 AA4 5 THR D 54 GLU D 62 -1 O MET D 60 N PHE D 44 SHEET 4 AA4 5 LYS D 98 SER D 106 -1 O LEU D 99 N ALA D 61 SHEET 5 AA4 5 LYS D 86 ASP D 90 -1 N LYS D 86 O CYS D 102 SSBOND 1 CYS A 26 CYS A 29 1555 1555 2.07 SSBOND 2 CYS C 26 CYS C 29 1555 1555 2.36 SSBOND 3 CYS D 26 CYS D 29 1555 1555 2.04 SITE 1 AC1 2 CYS A 26 LYS C 98 CRYST1 54.462 110.891 59.924 90.00 116.71 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018361 0.000000 0.009238 0.00000 SCALE2 0.000000 0.009018 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018681 0.00000